Protein–RNA interactions for Protein: Q6PDX6

Rnf220, E3 ubiquitin-protein ligase Rnf220, mousemouse

Predictions only

Length 566 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf220Q6PDX6 Josd2-202ENSMUST00000117324 858 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Rnf220Q6PDX6 Gm12350-201ENSMUST00000121208 462 ntBASIC12.85□□□□□ -0.35
Rnf220Q6PDX6 Map2k3os-201ENSMUST00000123544 1291 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Rnf220Q6PDX6 Mpc1-205ENSMUST00000142594 961 ntTSL 5 BASIC12.85□□□□□ -0.35
Rnf220Q6PDX6 Gm17112-201ENSMUST00000163194 432 ntTSL 3 BASIC12.85□□□□□ -0.35
Rnf220Q6PDX6 Gm29520-201ENSMUST00000191209 1067 ntTSL 5 BASIC12.85□□□□□ -0.35
Rnf220Q6PDX6 Eme1-201ENSMUST00000039949 2444 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Rnf220Q6PDX6 Ubqln1-202ENSMUST00000076454 3561 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
Rnf220Q6PDX6 Rp2-202ENSMUST00000115387 4498 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Rnf220Q6PDX6 Lypd6-202ENSMUST00000112712 3495 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
Rnf220Q6PDX6 Kcnc2-201ENSMUST00000092175 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Rnf220Q6PDX6 Zfp12-203ENSMUST00000077485 4294 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
Rnf220Q6PDX6 Clpb-211ENSMUST00000209579 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Rnf220Q6PDX6 C530008M17Rik-204ENSMUST00000121160 6921 ntAPPRIS ALT2 TSL 5 BASIC12.85□□□□□ -0.35
Rnf220Q6PDX6 Dst-213ENSMUST00000183302 8788 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Rnf220Q6PDX6 Sfmbt1-206ENSMUST00000228006 3299 ntAPPRIS P1 BASIC12.85□□□□□ -0.35
Rnf220Q6PDX6 Qrich1-202ENSMUST00000112155 3040 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Rnf220Q6PDX6 Megf6-201ENSMUST00000030897 6851 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
Rnf220Q6PDX6 Per2-201ENSMUST00000069620 5833 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Rnf220Q6PDX6 Nfatc2-202ENSMUST00000074618 6637 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
Rnf220Q6PDX6 Cyb5rl-203ENSMUST00000106758 2516 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
Rnf220Q6PDX6 Tor1aip2-207ENSMUST00000128941 2925 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Rnf220Q6PDX6 Pex5-204ENSMUST00000112531 3075 ntAPPRIS ALT1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Rnf220Q6PDX6 Ak4-201ENSMUST00000102780 4186 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
Rnf220Q6PDX6 Runx1t1-204ENSMUST00000105566 6090 ntAPPRIS ALT1 TSL 5 BASIC12.84□□□□□ -0.35
Rnf220Q6PDX6 Ercc5-201ENSMUST00000027214 3907 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Rnf220Q6PDX6 Xrcc1-201ENSMUST00000063249 2155 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Rnf220Q6PDX6 Tctn2-207ENSMUST00000185820 2733 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Rnf220Q6PDX6 Tcf21-202ENSMUST00000218002 1788 ntBASIC12.84□□□□□ -0.35
Rnf220Q6PDX6 Trpv1-201ENSMUST00000006106 2340 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
Rnf220Q6PDX6 Dnajc5-201ENSMUST00000072334 6578 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Rnf220Q6PDX6 Pcsk7-209ENSMUST00000216672 3599 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Rnf220Q6PDX6 Treh-202ENSMUST00000071219 1927 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Rnf220Q6PDX6 Vdac3-201ENSMUST00000009036 1354 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Rnf220Q6PDX6 Ndc80-201ENSMUST00000024851 2201 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Rnf220Q6PDX6 Cend1-203ENSMUST00000137488 1697 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Rnf220Q6PDX6 Ada-201ENSMUST00000017841 1688 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Rnf220Q6PDX6 AC154527.4-201ENSMUST00000224364 1667 ntBASIC12.84□□□□□ -0.35
Rnf220Q6PDX6 Brinp1-201ENSMUST00000030036 3212 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Rnf220Q6PDX6 Rpa2-201ENSMUST00000102561 1813 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Rnf220Q6PDX6 Tmem237-201ENSMUST00000087475 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Rnf220Q6PDX6 Rhbdd2-201ENSMUST00000043707 4207 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Rnf220Q6PDX6 Dlk1-203ENSMUST00000109842 1129 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Rnf220Q6PDX6 Mras-202ENSMUST00000119472 1190 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Rnf220Q6PDX6 Rpl34-ps1-201ENSMUST00000121998 354 ntBASIC12.84□□□□□ -0.35
Rnf220Q6PDX6 2310061I04Rik-204ENSMUST00000148721 1293 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
Rnf220Q6PDX6 Tnnt2-205ENSMUST00000178204 1172 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
Rnf220Q6PDX6 Tnnt2-207ENSMUST00000179863 1097 ntAPPRIS P4 TSL 5 BASIC12.84□□□□□ -0.35
Rnf220Q6PDX6 Tnnt2-209ENSMUST00000188028 1200 ntAPPRIS P4 TSL 5 BASIC12.84□□□□□ -0.35
Rnf220Q6PDX6 2810030D12Rik-203ENSMUST00000190461 1039 ntBASIC12.84□□□□□ -0.35
Rnf220Q6PDX6 Gm43397-201ENSMUST00000196422 481 ntTSL 3 BASIC12.84□□□□□ -0.35
Rnf220Q6PDX6 Zfp787-206ENSMUST00000208746 535 ntTSL 2 BASIC12.84□□□□□ -0.35
Rnf220Q6PDX6 Thap2-203ENSMUST00000218989 527 ntBASIC12.84□□□□□ -0.35
Rnf220Q6PDX6 Igflr1-201ENSMUST00000043850 1186 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Rnf220Q6PDX6 Limd2-201ENSMUST00000045923 2950 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Rnf220Q6PDX6 Ephx4-201ENSMUST00000049146 1279 ntAPPRIS P1 TSL 2 BASIC12.84□□□□□ -0.35
Rnf220Q6PDX6 Tinf2-201ENSMUST00000007733 2956 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Rnf220Q6PDX6 Rpl34-ps2-201ENSMUST00000081679 354 ntBASIC12.84□□□□□ -0.35
Rnf220Q6PDX6 Gm10154-201ENSMUST00000084445 354 ntBASIC12.84□□□□□ -0.35
Rnf220Q6PDX6 Cmtm7-202ENSMUST00000084867 874 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Rnf220Q6PDX6 G0s2-201ENSMUST00000009777 871 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Rnf220Q6PDX6 Htatip2-201ENSMUST00000085272 1418 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
Rnf220Q6PDX6 Kyat1-205ENSMUST00000113662 1850 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
Rnf220Q6PDX6 Pgap2-225ENSMUST00000156529 2034 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Rnf220Q6PDX6 Tgfbr2-201ENSMUST00000035014 3476 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Rnf220Q6PDX6 R3hdm2-210ENSMUST00000164831 2937 ntTSL 5 BASIC12.84□□□□□ -0.35
Rnf220Q6PDX6 Leng8-203ENSMUST00000121270 3620 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.35
Rnf220Q6PDX6 Poc1b-201ENSMUST00000020113 2862 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
Rnf220Q6PDX6 Csrnp3-207ENSMUST00000145598 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.35
Rnf220Q6PDX6 Gm26677-201ENSMUST00000180553 1672 ntTSL 5 BASIC12.83□□□□□ -0.35
Rnf220Q6PDX6 Gjb1-202ENSMUST00000119080 1513 ntAPPRIS P1 TSL 3 BASIC12.83□□□□□ -0.35
Rnf220Q6PDX6 Dtd1-201ENSMUST00000028917 1350 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Rnf220Q6PDX6 Tnk1-203ENSMUST00000108628 2450 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
Rnf220Q6PDX6 CT009757.3-201ENSMUST00000223367 2320 ntBASIC12.83□□□□□ -0.36
Rnf220Q6PDX6 Ush1c-207ENSMUST00000176371 1865 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
Rnf220Q6PDX6 Clcn3-204ENSMUST00000110301 4099 ntAPPRIS ALT1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Rnf220Q6PDX6 Sfxn3-202ENSMUST00000084493 2843 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Rnf220Q6PDX6 4930520O04Rik-202ENSMUST00000131898 2660 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Rnf220Q6PDX6 Rnf14-201ENSMUST00000072376 3038 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Rnf220Q6PDX6 Meig1-203ENSMUST00000115082 603 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Rnf220Q6PDX6 Gm16198-201ENSMUST00000118766 670 ntBASIC12.83□□□□□ -0.36
Rnf220Q6PDX6 Rpl36-ps8-201ENSMUST00000121187 315 ntBASIC12.83□□□□□ -0.36
Rnf220Q6PDX6 Gm20479-201ENSMUST00000126587 556 ntAPPRIS P1 TSL 3 BASIC12.83□□□□□ -0.36
Rnf220Q6PDX6 Gm16838-201ENSMUST00000144594 816 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Rnf220Q6PDX6 Hddc3-206ENSMUST00000206074 565 ntTSL 2 BASIC12.83□□□□□ -0.36
Rnf220Q6PDX6 Gm35082-201ENSMUST00000207308 338 ntTSL 3 BASIC12.83□□□□□ -0.36
Rnf220Q6PDX6 Pard6a-204ENSMUST00000212352 1234 ntTSL 2 BASIC12.83□□□□□ -0.36
Rnf220Q6PDX6 Gm9182-201ENSMUST00000217829 639 ntBASIC12.83□□□□□ -0.36
Rnf220Q6PDX6 1700037H04Rik-201ENSMUST00000028800 832 ntAPPRIS ALT1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Rnf220Q6PDX6 Khk-201ENSMUST00000031053 1257 ntTSL 5 BASIC12.83□□□□□ -0.36
Rnf220Q6PDX6 Riok1-201ENSMUST00000021866 2738 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Rnf220Q6PDX6 Dnmt3b-208ENSMUST00000109772 4015 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Rnf220Q6PDX6 Naaa-201ENSMUST00000113102 2414 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
Rnf220Q6PDX6 Ap5b1-201ENSMUST00000096318 3092 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Rnf220Q6PDX6 Nphp4-201ENSMUST00000056567 4583 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Rnf220Q6PDX6 Sytl1-201ENSMUST00000030674 1951 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Rnf220Q6PDX6 Zufsp-201ENSMUST00000048222 2991 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Rnf220Q6PDX6 Rbpms2-202ENSMUST00000169003 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Rnf220Q6PDX6 Ncor2-204ENSMUST00000111394 7452 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Rnf220Q6PDX6 Nob1-201ENSMUST00000003946 1658 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 25.2 ms