Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Gngt2-201ENSMUST00000036088 1587 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trim28Q62318 C030005K06Rik-201ENSMUST00000129164 2076 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Trim28Q62318 Stk33-204ENSMUST00000121748 2295 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
Trim28Q62318 Wwox-202ENSMUST00000109107 2383 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Trim28Q62318 Agbl5-213ENSMUST00000201917 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trim28Q62318 Src-202ENSMUST00000092576 3887 ntTSL 5 BASIC17.47■□□□□ 0.39
Trim28Q62318 Alk-201ENSMUST00000086639 4866 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trim28Q62318 Nek7-201ENSMUST00000027642 3737 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Trim28Q62318 Keap1-202ENSMUST00000164812 3614 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trim28Q62318 Capn7-201ENSMUST00000022451 3648 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trim28Q62318 Myef2-207ENSMUST00000147105 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trim28Q62318 Bmp3-202ENSMUST00000197143 2739 ntTSL 2 BASIC17.47■□□□□ 0.39
Trim28Q62318 D6Ertd527e-204ENSMUST00000204927 2218 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trim28Q62318 AC087890.1-201ENSMUST00000219321 1823 ntTSL 5 BASIC17.47■□□□□ 0.39
Trim28Q62318 Rbm15-201ENSMUST00000061772 4343 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trim28Q62318 Eif4g1-206ENSMUST00000115463 5378 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trim28Q62318 F2-201ENSMUST00000028681 1988 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trim28Q62318 Scrn3-202ENSMUST00000112050 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trim28Q62318 Grtp1-206ENSMUST00000210317 3013 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trim28Q62318 Olfr763-201ENSMUST00000077460 2523 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
Trim28Q62318 AC122371.1-201ENSMUST00000220876 1477 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Trim28Q62318 Sfmbt1-201ENSMUST00000054230 7837 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
Trim28Q62318 Cdk11b-203ENSMUST00000105600 3170 ntAPPRIS P3 TSL 5 BASIC17.46■□□□□ 0.39
Trim28Q62318 Spata3-202ENSMUST00000113344 1047 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trim28Q62318 Cdkn1a-202ENSMUST00000119901 748 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
Trim28Q62318 Gm15046-201ENSMUST00000130153 408 ntTSL 3 BASIC17.46■□□□□ 0.39
Trim28Q62318 Gm833-201ENSMUST00000143133 884 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Trim28Q62318 Mir7221-201ENSMUST00000184009 72 ntBASIC17.46■□□□□ 0.39
Trim28Q62318 Asgr1-201ENSMUST00000018699 1259 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trim28Q62318 Gm44974-201ENSMUST00000206387 1279 ntBASIC17.46■□□□□ 0.39
Trim28Q62318 Net1-207ENSMUST00000223258 597 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Trim28Q62318 AC022775.2-201ENSMUST00000227885 646 ntBASIC17.46■□□□□ 0.39
Trim28Q62318 AC154276.1-201ENSMUST00000228874 1299 ntBASIC17.46■□□□□ 0.39
Trim28Q62318 Snx24-201ENSMUST00000025417 994 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trim28Q62318 Cxcl16-201ENSMUST00000019064 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trim28Q62318 Hs3st3b1-201ENSMUST00000094103 4911 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trim28Q62318 Eif4g1-202ENSMUST00000073840 5394 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
Trim28Q62318 Acin1-219ENSMUST00000148754 2373 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
Trim28Q62318 Fam8a1-201ENSMUST00000099547 3664 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trim28Q62318 Hnrnpf-203ENSMUST00000167182 2271 ntAPPRIS P1 TSL 3 BASIC17.46■□□□□ 0.39
Trim28Q62318 Zdhhc15-201ENSMUST00000042070 5509 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trim28Q62318 Usf1-207ENSMUST00000160486 1878 ntTSL 2 BASIC17.46■□□□□ 0.38
Trim28Q62318 Gnl3-201ENSMUST00000037739 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trim28Q62318 Bcs1l-203ENSMUST00000113733 1488 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trim28Q62318 Mettl17-206ENSMUST00000164902 1461 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
Trim28Q62318 Poli-205ENSMUST00000161542 2736 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Trim28Q62318 Psmd2-201ENSMUST00000007212 2961 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trim28Q62318 Olfr1234-202ENSMUST00000111543 1386 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
Trim28Q62318 Ccdc167-202ENSMUST00000128751 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trim28Q62318 Triml2-203ENSMUST00000209872 1395 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Trim28Q62318 AC101945.2-201ENSMUST00000227886 1377 ntBASIC17.45■□□□□ 0.38
Trim28Q62318 Mzf1-204ENSMUST00000182490 2872 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trim28Q62318 Got1-201ENSMUST00000026196 2058 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trim28Q62318 6330418K02Rik-201ENSMUST00000124298 743 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Trim28Q62318 Gm17180-201ENSMUST00000172211 435 ntTSL 3 BASIC17.45■□□□□ 0.38
Trim28Q62318 1600014C10Rik-203ENSMUST00000177983 403 ntTSL 2 BASIC17.45■□□□□ 0.38
Trim28Q62318 Mir8109-201ENSMUST00000184375 117 ntBASIC17.45■□□□□ 0.38
Trim28Q62318 Gm45930-201ENSMUST00000221330 292 ntBASIC17.45■□□□□ 0.38
Trim28Q62318 Ambp-201ENSMUST00000030041 1268 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trim28Q62318 Olfr463-201ENSMUST00000081417 936 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
Trim28Q62318 n-R5s195-201ENSMUST00000082891 119 ntBASIC17.45■□□□□ 0.38
Trim28Q62318 Wdr25-206ENSMUST00000221510 1600 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Trim28Q62318 Gsn-201ENSMUST00000028239 2653 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trim28Q62318 Wscd2-201ENSMUST00000094452 4302 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trim28Q62318 Lmod3-201ENSMUST00000095655 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trim28Q62318 Gm5466-201ENSMUST00000119395 1890 ntBASIC17.45■□□□□ 0.38
Trim28Q62318 E2f3-203ENSMUST00000221536 4597 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trim28Q62318 E2f3-204ENSMUST00000222730 4579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trim28Q62318 Aim2-202ENSMUST00000147604 2839 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
Trim28Q62318 Rspry1-202ENSMUST00000121101 3092 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Trim28Q62318 Mettl1-201ENSMUST00000006915 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trim28Q62318 Zfp146-201ENSMUST00000062181 2029 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trim28Q62318 Sesn1-201ENSMUST00000041438 2600 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trim28Q62318 Mslnl-201ENSMUST00000047098 2628 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trim28Q62318 Pcsk6-202ENSMUST00000098391 4207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trim28Q62318 Mei4-202ENSMUST00000189391 1817 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Trim28Q62318 Pole3-201ENSMUST00000030091 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Trim28Q62318 Dlx6-202ENSMUST00000160937 2216 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Trim28Q62318 Enpp5-203ENSMUST00000154166 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Trim28Q62318 Bcat1-202ENSMUST00000048252 1642 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Trim28Q62318 Rasgrp1-201ENSMUST00000102534 5229 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
Trim28Q62318 Pcp2-206ENSMUST00000144977 534 ntAPPRIS ALT2 TSL 3 BASIC17.44■□□□□ 0.38
Trim28Q62318 Gm12167-201ENSMUST00000148132 578 ntTSL 2 BASIC17.44■□□□□ 0.38
Trim28Q62318 Egfl7-211ENSMUST00000152988 723 ntTSL 2 BASIC17.44■□□□□ 0.38
Trim28Q62318 4930516B21Rik-201ENSMUST00000181600 1195 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Trim28Q62318 Gm38411-201ENSMUST00000197971 941 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Trim28Q62318 4930447A16Rik-201ENSMUST00000022897 587 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Trim28Q62318 Rpl18a-201ENSMUST00000054220 1260 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Trim28Q62318 AC166491.1-201ENSMUST00000227053 2308 ntBASIC17.44■□□□□ 0.38
Trim28Q62318 Gm2420-202ENSMUST00000202224 2249 ntBASIC17.44■□□□□ 0.38
Trim28Q62318 Map3k7-201ENSMUST00000037607 5773 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Trim28Q62318 Ulk1-211ENSMUST00000200299 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Trim28Q62318 Gm11661-201ENSMUST00000121761 1327 ntBASIC17.44■□□□□ 0.38
Trim28Q62318 Gm43579-201ENSMUST00000202387 1307 ntBASIC17.44■□□□□ 0.38
Trim28Q62318 Blzf1-203ENSMUST00000120447 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trim28Q62318 Tnk1-203ENSMUST00000108628 2450 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
Trim28Q62318 Mks1-201ENSMUST00000038196 2499 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trim28Q62318 Snrk-201ENSMUST00000118886 4811 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trim28Q62318 Slit1-203ENSMUST00000169141 5673 ntTSL 5 BASIC17.43■□□□□ 0.38
Trim28Q62318 Arhgef18-201ENSMUST00000004684 5271 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Retrieved 100 of 76,532 protein–RNA pairs in 24.8 ms