Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Pagr1b-201ENSMUST00000172958 693 ntAPPRIS P1 TSL 3 BASIC12.31□□□□□ -0.44
Usf1Q61069 Mymx-203ENSMUST00000178858 804 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Usf1Q61069 Mospd4-201ENSMUST00000180618 576 ntBASIC12.31□□□□□ -0.44
Usf1Q61069 Hax1-207ENSMUST00000198782 855 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
Usf1Q61069 Otud6a-201ENSMUST00000060241 873 ntAPPRIS P1 BASIC12.31□□□□□ -0.44
Usf1Q61069 S100a8-201ENSMUST00000069927 486 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Usf1Q61069 Mtus2-202ENSMUST00000085554 1009 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Usf1Q61069 Slc31a2-201ENSMUST00000084530 1820 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
Usf1Q61069 Casp7-201ENSMUST00000026062 2350 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Usf1Q61069 Cadm2-203ENSMUST00000120898 2768 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Usf1Q61069 Ccna2-201ENSMUST00000029270 2965 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Usf1Q61069 Derl1-201ENSMUST00000022993 3175 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Usf1Q61069 Tmem185b-202ENSMUST00000183952 2824 ntAPPRIS P1 BASIC12.31□□□□□ -0.44
Usf1Q61069 Mcf2l-207ENSMUST00000110876 5253 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Usf1Q61069 Nt5c3b-203ENSMUST00000107397 1348 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Usf1Q61069 Arhgef1-201ENSMUST00000047873 3212 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Usf1Q61069 Cnot7-206ENSMUST00000135269 2461 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Usf1Q61069 Sbno2-204ENSMUST00000217972 2462 ntTSL 2 BASIC12.31□□□□□ -0.44
Usf1Q61069 Dgki-203ENSMUST00000101532 4596 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
Usf1Q61069 Traf3ip1-201ENSMUST00000047242 3474 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Usf1Q61069 Irs3-201ENSMUST00000057314 2337 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Usf1Q61069 Glis1-202ENSMUST00000106738 2744 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
Usf1Q61069 Nfe2l1-201ENSMUST00000081775 4654 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
Usf1Q61069 Zfp202-203ENSMUST00000168832 3329 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Usf1Q61069 Plch2-207ENSMUST00000139976 5322 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
Usf1Q61069 Ebf3-208ENSMUST00000210774 2994 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Usf1Q61069 Cdk5r1-201ENSMUST00000053413 4162 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
Usf1Q61069 Flywch1-202ENSMUST00000086325 2443 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Usf1Q61069 Zkscan14-203ENSMUST00000198959 2243 ntBASIC12.3□□□□□ -0.44
Usf1Q61069 Tpm3-201ENSMUST00000029549 2230 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Usf1Q61069 Eif4g3-215ENSMUST00000203828 5289 ntTSL 5 BASIC12.3□□□□□ -0.44
Usf1Q61069 Slc39a11-203ENSMUST00000106633 2688 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Usf1Q61069 AI849053-201ENSMUST00000181021 2658 ntTSL 3 BASIC12.3□□□□□ -0.44
Usf1Q61069 Atp9b-213ENSMUST00000225980 5150 ntAPPRIS P2 BASIC12.3□□□□□ -0.44
Usf1Q61069 Plch2-210ENSMUST00000176194 5619 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
Usf1Q61069 Gm12404-201ENSMUST00000122839 1661 ntTSL 5 BASIC12.3□□□□□ -0.44
Usf1Q61069 Neil1-203ENSMUST00000190245 1693 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Usf1Q61069 AC113441.2-201ENSMUST00000221538 1468 ntBASIC12.3□□□□□ -0.44
Usf1Q61069 Tagln2-201ENSMUST00000111228 716 ntAPPRIS P1 TSL 3 BASIC12.3□□□□□ -0.44
Usf1Q61069 Gm14350-201ENSMUST00000116642 640 ntBASIC12.3□□□□□ -0.44
Usf1Q61069 Gm11591-201ENSMUST00000120063 702 ntBASIC12.3□□□□□ -0.44
Usf1Q61069 Rab11b-ps2-201ENSMUST00000178377 657 ntBASIC12.3□□□□□ -0.44
Usf1Q61069 Ldlrad2-201ENSMUST00000178923 429 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
Usf1Q61069 AC155637.1-201ENSMUST00000218560 636 ntBASIC12.3□□□□□ -0.44
Usf1Q61069 AC148335.1-201ENSMUST00000218778 818 ntTSL 5 BASIC12.3□□□□□ -0.44
Usf1Q61069 Pfdn1-201ENSMUST00000025204 1077 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Usf1Q61069 Fn3k-201ENSMUST00000026175 1047 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Usf1Q61069 Ccdc113-201ENSMUST00000041569 1288 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Usf1Q61069 Poli-201ENSMUST00000043286 2591 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Usf1Q61069 Steap2-205ENSMUST00000115427 3470 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Usf1Q61069 Ifngr2-201ENSMUST00000023687 3254 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Usf1Q61069 Wt1-202ENSMUST00000111099 2441 ntTSL 5 BASIC12.3□□□□□ -0.44
Usf1Q61069 Gm45765-202ENSMUST00000212921 1313 ntTSL 5 BASIC12.3□□□□□ -0.44
Usf1Q61069 Fam71a-201ENSMUST00000171798 2234 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
Usf1Q61069 Ralgds-201ENSMUST00000028170 3590 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
Usf1Q61069 Emc7-201ENSMUST00000069747 5826 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Usf1Q61069 Gm18630-201ENSMUST00000222109 1397 ntBASIC12.3□□□□□ -0.44
Usf1Q61069 Las1l-201ENSMUST00000079987 2530 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Usf1Q61069 Eif3j1-201ENSMUST00000028668 5413 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Usf1Q61069 Csnk2a2-201ENSMUST00000056919 3773 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Usf1Q61069 Pdcd6ip-201ENSMUST00000035086 5951 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
Usf1Q61069 Gpc6-201ENSMUST00000078849 1668 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
Usf1Q61069 Zfp362-201ENSMUST00000071108 2674 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Usf1Q61069 Fmnl2-205ENSMUST00000155586 3939 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Usf1Q61069 Add2-203ENSMUST00000203279 1454 ntTSL 2 BASIC12.29□□□□□ -0.44
Usf1Q61069 Ccdc157-202ENSMUST00000101626 5153 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
Usf1Q61069 Taf2-201ENSMUST00000041733 5031 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Usf1Q61069 Irf3-201ENSMUST00000003284 2031 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Usf1Q61069 Npnt-204ENSMUST00000117164 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Usf1Q61069 Ociad1-201ENSMUST00000031038 1523 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Usf1Q61069 Sugp2-214ENSMUST00000164403 4099 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Usf1Q61069 Ndufs5-202ENSMUST00000106206 599 ntAPPRIS P1 TSL 3 BASIC12.29□□□□□ -0.44
Usf1Q61069 Gm8805-201ENSMUST00000117848 313 ntBASIC12.29□□□□□ -0.44
Usf1Q61069 Tnni1-205ENSMUST00000148201 1150 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
Usf1Q61069 Tnni1-206ENSMUST00000152075 1038 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
Usf1Q61069 Tnni1-207ENSMUST00000152208 1105 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
Usf1Q61069 Gm38161-201ENSMUST00000195344 576 ntTSL 2 BASIC12.29□□□□□ -0.44
Usf1Q61069 0610005C13Rik-202ENSMUST00000209510 671 ntTSL 3 BASIC12.29□□□□□ -0.44
Usf1Q61069 AC139319.1-201ENSMUST00000223331 690 ntTSL 5 BASIC12.29□□□□□ -0.44
Usf1Q61069 Ctrc-201ENSMUST00000037059 951 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
Usf1Q61069 4930442H23Rik-201ENSMUST00000056086 1245 ntAPPRIS P1 BASIC12.29□□□□□ -0.44
Usf1Q61069 Ikzf1-204ENSMUST00000076700 5163 ntAPPRIS P2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Usf1Q61069 Slc25a37-201ENSMUST00000037064 4174 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Usf1Q61069 Gm18244-201ENSMUST00000219747 1566 ntBASIC12.29□□□□□ -0.44
Usf1Q61069 Adal-204ENSMUST00000110665 2356 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Usf1Q61069 Gm13034-201ENSMUST00000121342 3177 ntBASIC12.29□□□□□ -0.44
Usf1Q61069 Arhgap44-203ENSMUST00000093002 3982 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
Usf1Q61069 Fbn1-201ENSMUST00000028633 9847 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Usf1Q61069 Gm39027-201ENSMUST00000208560 2942 ntTSL 5 BASIC12.29□□□□□ -0.44
Usf1Q61069 Gpr19-208ENSMUST00000165392 1643 ntTSL 3 BASIC12.29□□□□□ -0.44
Usf1Q61069 Gpr19-202ENSMUST00000066107 1647 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Usf1Q61069 Doc2b-201ENSMUST00000021209 4361 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Usf1Q61069 Gpr157-201ENSMUST00000094451 4900 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Usf1Q61069 Glmn-202ENSMUST00000082121 1945 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Usf1Q61069 Hdgfl1-201ENSMUST00000055915 1993 ntAPPRIS P1 BASIC12.29□□□□□ -0.44
Usf1Q61069 Iffo1-201ENSMUST00000117675 2833 ntAPPRIS P4 TSL 1 (best) BASIC12.29□□□□□ -0.44
Usf1Q61069 Taz-204ENSMUST00000124200 1742 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Usf1Q61069 Wdtc1-202ENSMUST00000105906 4057 ntTSL 5 BASIC12.28□□□□□ -0.44
Usf1Q61069 Map6-203ENSMUST00000122101 3233 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Usf1Q61069 Lrp1-202ENSMUST00000118455 2097 ntTSL 5 BASIC12.28□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 34.1 ms