Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 4921514A10Rik-201ENSMUST00000181450 2114 ntTSL 5 BASIC12.84□□□□□ -0.35
Cdx2P43241 Gm27320-201ENSMUST00000184892 109 ntBASIC12.84□□□□□ -0.35
Cdx2P43241 Prr29-204ENSMUST00000188561 592 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
Cdx2P43241 Prr29-206ENSMUST00000190795 822 ntTSL 5 BASIC12.84□□□□□ -0.35
Cdx2P43241 Gm6621-201ENSMUST00000193251 772 ntBASIC12.84□□□□□ -0.35
Cdx2P43241 Gm44069-201ENSMUST00000204898 506 ntBASIC12.84□□□□□ -0.35
Cdx2P43241 AC160029.2-201ENSMUST00000218285 548 ntTSL 3 BASIC12.84□□□□□ -0.35
Cdx2P43241 AC132384.14-201ENSMUST00000219346 1147 ntBASIC12.84□□□□□ -0.35
Cdx2P43241 Ifi30-202ENSMUST00000222087 981 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Cdx2P43241 Pfdn1-201ENSMUST00000025204 1077 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cdx2P43241 Cyct-201ENSMUST00000028430 655 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cdx2P43241 Tnfrsf4-201ENSMUST00000030952 1030 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cdx2P43241 Isoc2b-201ENSMUST00000064547 1080 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cdx2P43241 Gm5129-201ENSMUST00000065372 300 ntAPPRIS P1 BASIC12.84□□□□□ -0.35
Cdx2P43241 Pth2r-201ENSMUST00000027083 2414 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cdx2P43241 Hck-204ENSMUST00000191431 1575 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cdx2P43241 Gemin2-201ENSMUST00000021379 1588 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cdx2P43241 N6amt1-203ENSMUST00000118310 1700 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Cdx2P43241 Sgce-201ENSMUST00000004750 1703 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Cdx2P43241 Lims2-201ENSMUST00000025254 1870 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cdx2P43241 Chfr-207ENSMUST00000198633 2623 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cdx2P43241 Fstl4-201ENSMUST00000036796 4380 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cdx2P43241 Unc5d-203ENSMUST00000210298 3060 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Cdx2P43241 Unc5d-205ENSMUST00000211448 3087 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Cdx2P43241 Ric8b-201ENSMUST00000038523 3069 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Cdx2P43241 Art3-206ENSMUST00000120416 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cdx2P43241 Ly9-201ENSMUST00000004827 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cdx2P43241 Hoxaas3-202ENSMUST00000136806 2207 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Cdx2P43241 Skida1-202ENSMUST00000091420 4376 ntAPPRIS P2 TSL 5 BASIC12.83□□□□□ -0.35
Cdx2P43241 Cep170-205ENSMUST00000192961 2708 ntTSL 1 (best) BASIC12.83□□□□□ -0.35
Cdx2P43241 Rragb-201ENSMUST00000039720 2258 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
Cdx2P43241 Susd2-201ENSMUST00000077610 2275 ntTSL 1 (best) BASIC12.83□□□□□ -0.35
Cdx2P43241 Alkbh3os1-201ENSMUST00000028621 1549 ntTSL 5 BASIC12.83□□□□□ -0.35
Cdx2P43241 Mrm3-201ENSMUST00000040577 1510 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
Cdx2P43241 Atp2a2-202ENSMUST00000177974 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Cdx2P43241 Txndc11-203ENSMUST00000118679 3523 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Cdx2P43241 Ric8b-202ENSMUST00000095385 2909 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Cdx2P43241 Cdkl3-201ENSMUST00000063303 2765 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
Cdx2P43241 Slc9a3-201ENSMUST00000036208 2490 ntAPPRIS P2 TSL 2 BASIC12.83□□□□□ -0.36
Cdx2P43241 Cdt1-201ENSMUST00000006760 2189 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Cdx2P43241 Gm22323-201ENSMUST00000103832 109 ntBASIC12.83□□□□□ -0.36
Cdx2P43241 Gm24255-201ENSMUST00000104481 128 ntBASIC12.83□□□□□ -0.36
Cdx2P43241 Ufc1-202ENSMUST00000111302 914 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Cdx2P43241 Gm16202-201ENSMUST00000117532 544 ntBASIC12.83□□□□□ -0.36
Cdx2P43241 Gm11591-201ENSMUST00000120063 702 ntBASIC12.83□□□□□ -0.36
Cdx2P43241 Prss41-202ENSMUST00000122936 1088 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Cdx2P43241 Bcas1os1-201ENSMUST00000133586 1239 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Cdx2P43241 Gm16191-202ENSMUST00000148464 484 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Cdx2P43241 Swi5-207ENSMUST00000183946 768 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
Cdx2P43241 Gm37489-201ENSMUST00000191883 159 ntBASIC12.83□□□□□ -0.36
Cdx2P43241 Ighv1-62-201ENSMUST00000193406 350 ntBASIC12.83□□□□□ -0.36
Cdx2P43241 Gm32926-201ENSMUST00000214043 681 ntTSL 3 BASIC12.83□□□□□ -0.36
Cdx2P43241 Ddo-203ENSMUST00000213503 1759 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Cdx2P43241 Eno1b-201ENSMUST00000076155 1757 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Cdx2P43241 Slc4a1-201ENSMUST00000006749 4545 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Cdx2P43241 Afg3l2-201ENSMUST00000025408 3085 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Cdx2P43241 Timp2-201ENSMUST00000017610 3709 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Cdx2P43241 Aqp11-205ENSMUST00000206389 3737 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Cdx2P43241 Col25a1-201ENSMUST00000080335 2624 ntAPPRIS P4 TSL 5 BASIC12.83□□□□□ -0.36
Cdx2P43241 Gm26565-201ENSMUST00000181642 1968 ntTSL 5 BASIC12.83□□□□□ -0.36
Cdx2P43241 Tchp-201ENSMUST00000094441 2882 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Cdx2P43241 Dnmt3b-203ENSMUST00000081628 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Cdx2P43241 Btbd10-201ENSMUST00000047091 2581 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Cdx2P43241 Cd72-202ENSMUST00000098104 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Cdx2P43241 Rlf-201ENSMUST00000056635 6242 ntAPPRIS P2 TSL 5 BASIC12.82□□□□□ -0.36
Cdx2P43241 Edn3-201ENSMUST00000029030 3117 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Cdx2P43241 Cpped1-203ENSMUST00000121750 2614 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Cdx2P43241 Myh14-201ENSMUST00000048102 6457 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Cdx2P43241 Cln3-203ENSMUST00000098036 1571 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Cdx2P43241 Slc3a2-202ENSMUST00000170157 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Cdx2P43241 Rnf34-201ENSMUST00000031434 4440 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Cdx2P43241 4931406C07Rik-208ENSMUST00000216955 1750 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Cdx2P43241 Dnm1-204ENSMUST00000113352 4605 ntAPPRIS ALT1 TSL 2 BASIC12.82□□□□□ -0.36
Cdx2P43241 Serinc5-201ENSMUST00000049488 5366 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Cdx2P43241 Sec14l1-201ENSMUST00000021177 2866 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
Cdx2P43241 Fam122b-203ENSMUST00000114841 3074 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Cdx2P43241 Gm13297-201ENSMUST00000120205 934 ntBASIC12.82□□□□□ -0.36
Cdx2P43241 Gm14381-201ENSMUST00000122105 414 ntBASIC12.82□□□□□ -0.36
Cdx2P43241 Gm13716-201ENSMUST00000126401 808 ntTSL 5 BASIC12.82□□□□□ -0.36
Cdx2P43241 Gm829-202ENSMUST00000146622 722 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Cdx2P43241 2310057J18Rik-201ENSMUST00000015663 1238 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Cdx2P43241 Gm7008-202ENSMUST00000170019 402 ntTSL 2 BASIC12.82□□□□□ -0.36
Cdx2P43241 Rn7s1-201ENSMUST00000174924 300 ntBASIC12.82□□□□□ -0.36
Cdx2P43241 Rn7s2-201ENSMUST00000175032 300 ntBASIC12.82□□□□□ -0.36
Cdx2P43241 Gm26461-201ENSMUST00000175064 290 ntBASIC12.82□□□□□ -0.36
Cdx2P43241 Caly-203ENSMUST00000211044 1029 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
Cdx2P43241 AC158516.1-201ENSMUST00000213921 205 ntTSL 5 BASIC12.82□□□□□ -0.36
Cdx2P43241 1700120B22Rik-201ENSMUST00000054837 464 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Cdx2P43241 Stk33-202ENSMUST00000106745 2410 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Cdx2P43241 Ece2-201ENSMUST00000003898 3152 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
Cdx2P43241 Ubc-202ENSMUST00000136312 2618 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Cdx2P43241 E230013L22Rik-201ENSMUST00000180408 1856 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Cdx2P43241 H2-Q6-202ENSMUST00000174699 2085 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
Cdx2P43241 Map2k6-201ENSMUST00000020949 2068 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Cdx2P43241 Egfl7-201ENSMUST00000100290 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Cdx2P43241 Stx4a-202ENSMUST00000121705 1316 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Cdx2P43241 Camk2b-209ENSMUST00000109813 4023 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Cdx2P43241 Fsd1-201ENSMUST00000011733 1748 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Cdx2P43241 Camk2b-204ENSMUST00000090443 4004 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Cdx2P43241 Adgrb2-202ENSMUST00000097868 4635 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 52.2 ms