Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Slc16a12-201ENSMUST00000009522 4051 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Sdc1P18828 Wscd1-201ENSMUST00000021168 2757 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Sdc1P18828 Ttbk2-203ENSMUST00000085840 11152 ntAPPRIS P1 TSL 5 BASIC11.08□□□□□ -0.64
Sdc1P18828 Grm5-202ENSMUST00000125009 8047 ntAPPRIS P3 TSL 5 BASIC11.08□□□□□ -0.64
Sdc1P18828 Paqr8-202ENSMUST00000167119 1472 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Sdc1P18828 Prodh-205ENSMUST00000136776 2041 ntAPPRIS ALT2 TSL 5 BASIC11.08□□□□□ -0.64
Sdc1P18828 Atxn7l1os2-201ENSMUST00000138617 2019 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Sdc1P18828 Gm15459-201ENSMUST00000117405 1941 ntBASIC11.08□□□□□ -0.64
Sdc1P18828 Gm8355-201ENSMUST00000177767 1941 ntBASIC11.08□□□□□ -0.64
Sdc1P18828 Gm42706-201ENSMUST00000199733 1910 ntBASIC11.08□□□□□ -0.64
Sdc1P18828 Gm2670-201ENSMUST00000180668 2804 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Sdc1P18828 Zglp1-201ENSMUST00000115494 1010 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Sdc1P18828 9430038I01Rik-202ENSMUST00000117404 699 ntAPPRIS ALT2 TSL 5 BASIC11.08□□□□□ -0.64
Sdc1P18828 Oaz2-ps-201ENSMUST00000121735 537 ntBASIC11.08□□□□□ -0.64
Sdc1P18828 AA414768-201ENSMUST00000121924 1257 ntBASIC11.08□□□□□ -0.64
Sdc1P18828 0610025J13Rik-201ENSMUST00000131324 652 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Sdc1P18828 Gm11750-201ENSMUST00000146016 583 ntTSL 5 BASIC11.08□□□□□ -0.64
Sdc1P18828 0610025J13Rik-203ENSMUST00000180374 713 ntTSL 5 BASIC11.08□□□□□ -0.64
Sdc1P18828 Gm3809-201ENSMUST00000180973 1006 ntBASIC11.08□□□□□ -0.64
Sdc1P18828 Gm26887-201ENSMUST00000181282 547 ntTSL 5 BASIC11.08□□□□□ -0.64
Sdc1P18828 Lsm1-203ENSMUST00000211168 343 ntTSL 3 BASIC11.08□□□□□ -0.64
Sdc1P18828 Chmp2a-201ENSMUST00000005711 949 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Sdc1P18828 Wdr83-201ENSMUST00000093357 1238 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Sdc1P18828 Mrgpra9-201ENSMUST00000098436 1049 ntAPPRIS ALT2 TSL 5 BASIC11.08□□□□□ -0.64
Sdc1P18828 Arhgef40-202ENSMUST00000100639 4843 ntAPPRIS ALT2 TSL 1 (best) BASIC11.08□□□□□ -0.64
Sdc1P18828 Acadsb-201ENSMUST00000015829 6081 ntAPPRIS P2 TSL 1 (best) BASIC11.08□□□□□ -0.64
Sdc1P18828 Vax2os-203ENSMUST00000155159 4063 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Sdc1P18828 Sqle-202ENSMUST00000100640 2636 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Sdc1P18828 Capn3-201ENSMUST00000028748 2606 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Sdc1P18828 Gm14452-201ENSMUST00000118680 1632 ntBASIC11.08□□□□□ -0.64
Sdc1P18828 Lat2-201ENSMUST00000036362 1637 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Sdc1P18828 Coq3-201ENSMUST00000029909 2651 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Sdc1P18828 Pcp2-202ENSMUST00000128566 1447 ntAPPRIS ALT2 TSL 2 BASIC11.08□□□□□ -0.64
Sdc1P18828 Stxbp1-202ENSMUST00000077458 3616 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Sdc1P18828 Dnajc30-201ENSMUST00000071263 1661 ntAPPRIS P1 BASIC11.08□□□□□ -0.64
Sdc1P18828 Riok1-201ENSMUST00000021866 2738 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Sdc1P18828 Gm8337-201ENSMUST00000187358 1938 ntBASIC11.07□□□□□ -0.64
Sdc1P18828 Tppp-201ENSMUST00000022057 5090 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Sdc1P18828 Cerk-203ENSMUST00000156546 2162 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Sdc1P18828 AC241621.2-201ENSMUST00000223991 2151 ntBASIC11.07□□□□□ -0.64
Sdc1P18828 Myo18a-220ENSMUST00000164334 5381 ntAPPRIS ALT2 TSL 5 BASIC11.07□□□□□ -0.64
Sdc1P18828 Bmp4-201ENSMUST00000074077 2064 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Sdc1P18828 Snx29-207ENSMUST00000180792 2667 ntAPPRIS P1 TSL 5 BASIC11.07□□□□□ -0.64
Sdc1P18828 Slc39a9-208ENSMUST00000219706 5427 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Sdc1P18828 Ccng1-201ENSMUST00000020576 3512 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Sdc1P18828 Lmnb2-201ENSMUST00000057623 3531 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Sdc1P18828 Prickle1-202ENSMUST00000109255 4144 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Sdc1P18828 Dusp12-201ENSMUST00000027970 1374 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Sdc1P18828 Hspb6-201ENSMUST00000044048 1363 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Sdc1P18828 Ocln-203ENSMUST00000159459 1950 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Sdc1P18828 Tmem178b-201ENSMUST00000061740 3178 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Sdc1P18828 Prrxl1-203ENSMUST00000187377 1629 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Sdc1P18828 Ctgf-203ENSMUST00000176228 2490 ntTSL 2 BASIC11.07□□□□□ -0.64
Sdc1P18828 Agt-201ENSMUST00000063278 1891 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Sdc1P18828 Kpna1-201ENSMUST00000004054 5039 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Sdc1P18828 Chchd7-205ENSMUST00000120732 711 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Sdc1P18828 Gm29257-201ENSMUST00000186115 639 ntBASIC11.07□□□□□ -0.64
Sdc1P18828 Gm35154-202ENSMUST00000217008 1093 ntTSL 5 BASIC11.07□□□□□ -0.64
Sdc1P18828 Cox4i1-201ENSMUST00000034276 745 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Sdc1P18828 Ly6k-201ENSMUST00000060301 791 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Sdc1P18828 Sh3bp5l-201ENSMUST00000073128 2977 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Sdc1P18828 Nutf2-201ENSMUST00000008594 948 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Sdc1P18828 Mgme1-202ENSMUST00000110027 2359 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Sdc1P18828 Rbm46-201ENSMUST00000048647 1794 ntAPPRIS P1 TSL 5 BASIC11.07□□□□□ -0.64
Sdc1P18828 Vwa3b-202ENSMUST00000067178 1769 ntAPPRIS P5 TSL 2 BASIC11.07□□□□□ -0.64
Sdc1P18828 Xkr8-201ENSMUST00000045550 4245 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Sdc1P18828 Fancc-218ENSMUST00000220684 2006 ntTSL 5 BASIC11.07□□□□□ -0.64
Sdc1P18828 Zbtb7b-202ENSMUST00000107432 3639 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Sdc1P18828 Gm37500-201ENSMUST00000192059 1443 ntBASIC11.07□□□□□ -0.64
Sdc1P18828 Lhx6-201ENSMUST00000112960 3345 ntAPPRIS P1 TSL 2 BASIC11.07□□□□□ -0.64
Sdc1P18828 Gm42890-202ENSMUST00000167642 2566 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Sdc1P18828 Bend7-201ENSMUST00000056914 2302 ntAPPRIS P3 TSL 1 (best) BASIC11.07□□□□□ -0.64
Sdc1P18828 Gypa-201ENSMUST00000063359 1848 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Sdc1P18828 Spryd4-201ENSMUST00000061995 1583 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Sdc1P18828 Cln3-203ENSMUST00000098036 1571 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Sdc1P18828 Rbak-202ENSMUST00000165318 3480 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Sdc1P18828 Zufsp-201ENSMUST00000048222 2991 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Sdc1P18828 Gm28373-201ENSMUST00000178129 2724 ntTSL 2 BASIC11.07□□□□□ -0.64
Sdc1P18828 Gpatch4-203ENSMUST00000193398 2210 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Sdc1P18828 Snrk-203ENSMUST00000120173 4758 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Sdc1P18828 Rcan2-202ENSMUST00000044895 3363 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Sdc1P18828 Gm11732-201ENSMUST00000151381 1742 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Sdc1P18828 Dcp1b-201ENSMUST00000073909 1748 ntAPPRIS ALT2 TSL 1 (best) BASIC11.06□□□□□ -0.64
Sdc1P18828 Ppp1r18-203ENSMUST00000127442 3524 ntAPPRIS ALT2 TSL 1 (best) BASIC11.06□□□□□ -0.64
Sdc1P18828 Pdxdc1-201ENSMUST00000023361 4228 ntAPPRIS ALT2 TSL 1 (best) BASIC11.06□□□□□ -0.64
Sdc1P18828 Ddx17-201ENSMUST00000054014 4761 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Sdc1P18828 Pak1-201ENSMUST00000033040 3065 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Sdc1P18828 Eif1ax-201ENSMUST00000087143 5172 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Sdc1P18828 Ankrd61-203ENSMUST00000110718 1774 ntAPPRIS ALT2 TSL 1 (best) BASIC11.06□□□□□ -0.64
Sdc1P18828 Fen1-203ENSMUST00000142241 2152 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Sdc1P18828 Ptdss2-201ENSMUST00000026568 3624 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Sdc1P18828 Ptpru-201ENSMUST00000030741 4416 ntAPPRIS P1 TSL 5 BASIC11.06□□□□□ -0.64
Sdc1P18828 Plcb1-202ENSMUST00000110116 7003 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Sdc1P18828 Cend1-203ENSMUST00000137488 1697 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Sdc1P18828 Spint2-202ENSMUST00000108236 1211 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Sdc1P18828 Gm11764-201ENSMUST00000120221 623 ntBASIC11.06□□□□□ -0.64
Sdc1P18828 Gm15635-203ENSMUST00000148972 554 ntTSL 2 BASIC11.06□□□□□ -0.64
Sdc1P18828 Gm2272-201ENSMUST00000194903 582 ntBASIC11.06□□□□□ -0.64
Sdc1P18828 Spata33-204ENSMUST00000212346 715 ntTSL 2 BASIC11.06□□□□□ -0.64
Sdc1P18828 AC148328.1-201ENSMUST00000216448 920 ntTSL 5 BASIC11.06□□□□□ -0.64
Retrieved 100 of 76,532 protein–RNA pairs in 32.8 ms