Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Matn3-201ENSMUST00000020899 3014 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Col3a1P08121 Upk3bl-202ENSMUST00000111137 1119 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
Col3a1P08121 Gm27243-201ENSMUST00000183964 521 ntBASIC15.98■□□□□ 0.15
Col3a1P08121 Gm38266-201ENSMUST00000194931 421 ntBASIC15.98■□□□□ 0.15
Col3a1P08121 Gm44772-201ENSMUST00000207623 1191 ntBASIC15.98■□□□□ 0.15
Col3a1P08121 Stambp-ps1-201ENSMUST00000209280 1208 ntBASIC15.98■□□□□ 0.15
Col3a1P08121 Pym1-203ENSMUST00000218218 1143 ntTSL 3 BASIC15.98■□□□□ 0.15
Col3a1P08121 1500011B03Rik-201ENSMUST00000061251 579 ntAPPRIS P5 TSL 1 (best) BASIC15.98■□□□□ 0.15
Col3a1P08121 Alkbh3-202ENSMUST00000111240 1395 ntTSL 5 BASIC15.98■□□□□ 0.15
Col3a1P08121 Hsd17b6-201ENSMUST00000026462 1392 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
Col3a1P08121 Pir-201ENSMUST00000033749 1599 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Col3a1P08121 Fbxl12-207ENSMUST00000151861 1668 ntTSL 2 BASIC15.98■□□□□ 0.15
Col3a1P08121 Sorcs3-201ENSMUST00000078880 5634 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Col3a1P08121 Kdm2a-202ENSMUST00000075856 7242 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
Col3a1P08121 Pprc1-203ENSMUST00000111899 5246 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
Col3a1P08121 Fam167a-201ENSMUST00000121288 4231 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Col3a1P08121 Spef1-202ENSMUST00000110218 2600 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Col3a1P08121 Prkx-202ENSMUST00000114044 2639 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Col3a1P08121 Arl6ip6-201ENSMUST00000028336 2548 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Col3a1P08121 A530083I20Rik-201ENSMUST00000180486 2421 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Col3a1P08121 Zap70-201ENSMUST00000027291 2245 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Col3a1P08121 Brms1-201ENSMUST00000116567 1338 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Col3a1P08121 Fpr1-201ENSMUST00000061516 1324 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Col3a1P08121 Larp4b-201ENSMUST00000091829 5720 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Col3a1P08121 Igsf8-204ENSMUST00000139528 2866 ntTSL 2 BASIC15.98■□□□□ 0.15
Col3a1P08121 Tub-201ENSMUST00000033341 5997 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Col3a1P08121 Gm43399-201ENSMUST00000202546 2374 ntBASIC15.98■□□□□ 0.15
Col3a1P08121 Pdhx-202ENSMUST00000111183 2078 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Col3a1P08121 Faf1-201ENSMUST00000102724 4468 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Col3a1P08121 Il12rb1-205ENSMUST00000212657 2741 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
Col3a1P08121 Arhgap35-201ENSMUST00000075845 9147 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Col3a1P08121 Olfr1234-202ENSMUST00000111543 1386 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
Col3a1P08121 Map7d1-202ENSMUST00000106132 3195 ntAPPRIS ALT2 TSL 2 BASIC15.97■□□□□ 0.15
Col3a1P08121 Gm10327-201ENSMUST00000105222 1002 ntBASIC15.97■□□□□ 0.15
Col3a1P08121 Gm6023-201ENSMUST00000118217 606 ntBASIC15.97■□□□□ 0.15
Col3a1P08121 Gm13350-201ENSMUST00000120519 479 ntBASIC15.97■□□□□ 0.15
Col3a1P08121 S100a14-202ENSMUST00000167598 1059 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Col3a1P08121 Gm37259-201ENSMUST00000193903 849 ntBASIC15.97■□□□□ 0.15
Col3a1P08121 Sox2ot-205ENSMUST00000196795 754 ntTSL 3 BASIC15.97■□□□□ 0.15
Col3a1P08121 Gm43822-201ENSMUST00000200285 476 ntBASIC15.97■□□□□ 0.15
Col3a1P08121 Gm5781-201ENSMUST00000219792 443 ntBASIC15.97■□□□□ 0.15
Col3a1P08121 AC154595.3-201ENSMUST00000224579 384 ntBASIC15.97■□□□□ 0.15
Col3a1P08121 Tas2r137-201ENSMUST00000064932 1073 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
Col3a1P08121 Umad1-204ENSMUST00000159433 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
Col3a1P08121 Sufu-203ENSMUST00000118440 2663 ntTSL 5 BASIC15.97■□□□□ 0.15
Col3a1P08121 Prpf3-201ENSMUST00000015892 2933 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Col3a1P08121 Gm9918-201ENSMUST00000181801 2192 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Col3a1P08121 Loxl1-201ENSMUST00000061799 3297 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Col3a1P08121 Gpr19-204ENSMUST00000116515 2075 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Col3a1P08121 Gabrb3-201ENSMUST00000039697 5579 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Col3a1P08121 Usf1-207ENSMUST00000160486 1878 ntTSL 2 BASIC15.97■□□□□ 0.15
Col3a1P08121 Ap2a1-202ENSMUST00000107857 3301 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Col3a1P08121 Wwox-201ENSMUST00000004756 2244 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Col3a1P08121 Mtm1-201ENSMUST00000025391 3286 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Col3a1P08121 Pnck-203ENSMUST00000114473 1492 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Col3a1P08121 1190002N15Rik-201ENSMUST00000113028 3950 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Col3a1P08121 Sox21-201ENSMUST00000170662 3799 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
Col3a1P08121 Ptprs-201ENSMUST00000067538 6855 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Col3a1P08121 Bend4-204ENSMUST00000201972 8268 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
Col3a1P08121 Stpg2-202ENSMUST00000106239 2055 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
Col3a1P08121 Cabp2-201ENSMUST00000159148 1030 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
Col3a1P08121 Gm16302-201ENSMUST00000159268 428 ntTSL 3 BASIC15.97■□□□□ 0.15
Col3a1P08121 Gm38241-201ENSMUST00000192641 898 ntBASIC15.97■□□□□ 0.15
Col3a1P08121 Gm44632-201ENSMUST00000207245 474 ntTSL 2 BASIC15.97■□□□□ 0.15
Col3a1P08121 Gm8227-201ENSMUST00000223306 571 ntBASIC15.97■□□□□ 0.15
Col3a1P08121 Dph3-201ENSMUST00000022461 1057 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Col3a1P08121 Ndufb3-201ENSMUST00000027193 763 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Col3a1P08121 Egr2-203ENSMUST00000127820 2665 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
Col3a1P08121 Shroom3-201ENSMUST00000113051 6435 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
Col3a1P08121 Gpt2-201ENSMUST00000034136 3639 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Col3a1P08121 Abl2-201ENSMUST00000027888 3549 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
Col3a1P08121 Kcnj12-201ENSMUST00000041944 2459 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
Col3a1P08121 Sik1-201ENSMUST00000024839 4511 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Col3a1P08121 Ppp1cb-201ENSMUST00000015100 5962 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Col3a1P08121 Gnl3-201ENSMUST00000037739 1947 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Col3a1P08121 Prkcb-202ENSMUST00000064989 2911 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
Col3a1P08121 Igbp1b-201ENSMUST00000054786 1456 ntAPPRIS P1 BASIC15.96■□□□□ 0.15
Col3a1P08121 Acot7-202ENSMUST00000075363 1457 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
Col3a1P08121 Syngap1-204ENSMUST00000194598 6011 ntAPPRIS P2 TSL 5 BASIC15.96■□□□□ 0.15
Col3a1P08121 Gjb5-201ENSMUST00000046498 1721 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Col3a1P08121 Skor1-202ENSMUST00000116613 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
Col3a1P08121 Esrrb-202ENSMUST00000110203 2363 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
Col3a1P08121 Fbxo21-201ENSMUST00000035579 3883 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
Col3a1P08121 Ccne2-207ENSMUST00000170901 3006 ntAPPRIS P4 TSL 1 (best) BASIC15.96■□□□□ 0.15
Col3a1P08121 Stk33-204ENSMUST00000121748 2295 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
Col3a1P08121 Slc25a14-201ENSMUST00000033431 1760 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
Col3a1P08121 Pitpnm2-210ENSMUST00000162812 6952 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
Col3a1P08121 Gng7-205ENSMUST00000118465 875 ntAPPRIS ALT1 TSL 1 (best) BASIC15.96■□□□□ 0.14
Col3a1P08121 0610037L13Rik-205ENSMUST00000119394 741 ntTSL 3 BASIC15.96■□□□□ 0.14
Col3a1P08121 Gm7584-201ENSMUST00000175829 940 ntBASIC15.96■□□□□ 0.14
Col3a1P08121 Gm28511-201ENSMUST00000191594 450 ntTSL 3 BASIC15.96■□□□□ 0.14
Col3a1P08121 Gm38297-201ENSMUST00000195122 1057 ntBASIC15.96■□□□□ 0.14
Col3a1P08121 Gm33474-201ENSMUST00000199486 1231 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
Col3a1P08121 Gm7783-201ENSMUST00000204795 781 ntBASIC15.96■□□□□ 0.14
Col3a1P08121 4930442H23Rik-201ENSMUST00000056086 1245 ntAPPRIS P1 BASIC15.96■□□□□ 0.14
Col3a1P08121 Chchd1-201ENSMUST00000071215 616 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
Col3a1P08121 Gm5773-201ENSMUST00000090853 1143 ntAPPRIS P1 BASIC15.96■□□□□ 0.14
Col3a1P08121 Erfe-201ENSMUST00000086861 2815 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
Col3a1P08121 Cops5-201ENSMUST00000027050 1698 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
Col3a1P08121 Ptpn6-201ENSMUST00000004377 2308 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.14
Retrieved 100 of 76,532 protein–RNA pairs in 31.6 ms