Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Gm34923-201ENSMUST00000222673 5043 ntTSL 5 BASIC11.21□□□□□ -0.61
Hmgb3O54879 Prkca-202ENSMUST00000100302 2265 ntTSL 1 (best) BASIC11.21□□□□□ -0.62
Hmgb3O54879 Lmod3-201ENSMUST00000095655 2215 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
Hmgb3O54879 Fchsd1-201ENSMUST00000043437 4270 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
Hmgb3O54879 Rps6ka4-202ENSMUST00000170516 3105 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
Hmgb3O54879 Rps6ka4-201ENSMUST00000025903 3105 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
Hmgb3O54879 Myo1d-202ENSMUST00000070997 3106 ntTSL 1 (best) BASIC11.21□□□□□ -0.62
Hmgb3O54879 Smyd1-203ENSMUST00000114188 2064 ntTSL 5 BASIC11.21□□□□□ -0.62
Hmgb3O54879 Ptp4a1-201ENSMUST00000027232 4145 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
Hmgb3O54879 Polr3g-201ENSMUST00000048993 3054 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
Hmgb3O54879 Mapkbp1-201ENSMUST00000066058 6942 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
Hmgb3O54879 Eif5-201ENSMUST00000050993 1969 ntAPPRIS P2 TSL 1 (best) BASIC11.21□□□□□ -0.62
Hmgb3O54879 Cap2-201ENSMUST00000021802 3713 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
Hmgb3O54879 Nudt18-202ENSMUST00000228554 3619 ntBASIC11.21□□□□□ -0.62
Hmgb3O54879 Srp54a-202ENSMUST00000220578 4498 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
Hmgb3O54879 Scyl2-201ENSMUST00000092227 3566 ntAPPRIS ALT1 TSL 1 (best) BASIC11.21□□□□□ -0.62
Hmgb3O54879 Phactr3-202ENSMUST00000103066 2680 ntAPPRIS P4 TSL 1 (best) BASIC11.21□□□□□ -0.62
Hmgb3O54879 Myh8-201ENSMUST00000019625 6149 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
Hmgb3O54879 Pik3ip1-201ENSMUST00000045153 2573 ntAPPRIS P2 TSL 1 (best) BASIC11.21□□□□□ -0.62
Hmgb3O54879 Afap1l1-201ENSMUST00000120472 3444 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
Hmgb3O54879 Cbfa2t3-203ENSMUST00000127984 7645 ntAPPRIS P3 TSL 1 (best) BASIC11.21□□□□□ -0.62
Hmgb3O54879 Zbtb25-204ENSMUST00000176278 1672 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Hmgb3O54879 Arl14ep-201ENSMUST00000028536 3337 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Hmgb3O54879 Slc25a25-205ENSMUST00000113310 3278 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
Hmgb3O54879 Mpp3-204ENSMUST00000107168 3094 ntAPPRIS P1 TSL 5 BASIC11.2□□□□□ -0.62
Hmgb3O54879 Zfp296-201ENSMUST00000108453 1530 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Hmgb3O54879 Gjb1-202ENSMUST00000119080 1513 ntAPPRIS P1 TSL 3 BASIC11.2□□□□□ -0.62
Hmgb3O54879 Pimreg-201ENSMUST00000021164 1513 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Hmgb3O54879 Nmur1-203ENSMUST00000212541 1534 ntTSL 5 BASIC11.2□□□□□ -0.62
Hmgb3O54879 Pprc1-201ENSMUST00000062322 5205 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
Hmgb3O54879 Tardbp-210ENSMUST00000172073 6513 ntTSL 5 BASIC11.2□□□□□ -0.62
Hmgb3O54879 Il20ra-201ENSMUST00000020185 2105 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Hmgb3O54879 Zfp609-201ENSMUST00000159109 7777 ntAPPRIS P1 TSL 5 BASIC11.2□□□□□ -0.62
Hmgb3O54879 Slc6a4-202ENSMUST00000108402 2796 ntAPPRIS P1 TSL 5 BASIC11.2□□□□□ -0.62
Hmgb3O54879 Slc39a8-206ENSMUST00000180196 3383 ntAPPRIS P1 TSL 5 BASIC11.2□□□□□ -0.62
Hmgb3O54879 Aacs-201ENSMUST00000031445 3239 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Hmgb3O54879 Ndufb6-202ENSMUST00000108108 480 ntTSL 3 BASIC11.2□□□□□ -0.62
Hmgb3O54879 Crybb2-202ENSMUST00000112336 906 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Hmgb3O54879 Gm15758-201ENSMUST00000161681 695 ntTSL 5 BASIC11.2□□□□□ -0.62
Hmgb3O54879 Gm17114-201ENSMUST00000164716 511 ntTSL 3 BASIC11.2□□□□□ -0.62
Hmgb3O54879 Gm20036-201ENSMUST00000177547 844 ntTSL 3 BASIC11.2□□□□□ -0.62
Hmgb3O54879 Pbx2-205ENSMUST00000183827 1186 ntTSL 5 BASIC11.2□□□□□ -0.62
Hmgb3O54879 H2-Bl-204ENSMUST00000184502 862 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
Hmgb3O54879 AV026068-213ENSMUST00000223675 1171 ntBASIC11.2□□□□□ -0.62
Hmgb3O54879 Tsr3-201ENSMUST00000063574 1192 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Hmgb3O54879 Rpl30-202ENSMUST00000079735 886 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Hmgb3O54879 Cep170b-201ENSMUST00000092279 3817 ntTSL 5 BASIC11.2□□□□□ -0.62
Hmgb3O54879 Fancc-201ENSMUST00000073029 3165 ntAPPRIS P3 TSL 1 (best) BASIC11.2□□□□□ -0.62
Hmgb3O54879 Bud13-201ENSMUST00000074957 2539 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Hmgb3O54879 Spock1-206ENSMUST00000189373 3128 ntTSL 5 BASIC11.2□□□□□ -0.62
Hmgb3O54879 Kcnn2-201ENSMUST00000066890 3682 ntAPPRIS ALT2 TSL 5 BASIC11.2□□□□□ -0.62
Hmgb3O54879 Rubie-203ENSMUST00000227803 2430 ntBASIC11.2□□□□□ -0.62
Hmgb3O54879 Mpl-203ENSMUST00000106375 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
Hmgb3O54879 Rxrg-204ENSMUST00000111386 1705 ntAPPRIS P1 TSL 5 BASIC11.2□□□□□ -0.62
Hmgb3O54879 Araf-203ENSMUST00000122312 2854 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
Hmgb3O54879 Dda1-206ENSMUST00000138892 1738 ntTSL 3 BASIC11.2□□□□□ -0.62
Hmgb3O54879 Atg7-207ENSMUST00000182428 2264 ntAPPRIS ALT2 TSL 5 BASIC11.2□□□□□ -0.62
Hmgb3O54879 Rcan2-202ENSMUST00000044895 3363 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
Hmgb3O54879 Gm20149-201ENSMUST00000214691 1667 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
Hmgb3O54879 Ccdc162-203ENSMUST00000099932 2742 ntTSL 5 BASIC11.2□□□□□ -0.62
Hmgb3O54879 Baiap2l1-201ENSMUST00000055190 3247 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Hmgb3O54879 Prn-201ENSMUST00000124100 2132 ntAPPRIS P1 TSL 2 BASIC11.2□□□□□ -0.62
Hmgb3O54879 Arid3b-209ENSMUST00000171444 4171 ntAPPRIS P2 TSL 5 BASIC11.2□□□□□ -0.62
Hmgb3O54879 Slc16a2-201ENSMUST00000042664 4152 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Hmgb3O54879 Slc7a7-202ENSMUST00000195970 2057 ntAPPRIS P1 TSL 5 BASIC11.2□□□□□ -0.62
Hmgb3O54879 Tmem132e-202ENSMUST00000092852 4105 ntAPPRIS ALT2 TSL 2 BASIC11.2□□□□□ -0.62
Hmgb3O54879 Cdc37l1-208ENSMUST00000225310 4079 ntAPPRIS ALT2 BASIC11.2□□□□□ -0.62
Hmgb3O54879 Cnih1-201ENSMUST00000015903 1538 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Hmgb3O54879 2900005J15Rik-202ENSMUST00000171190 2025 ntBASIC11.19□□□□□ -0.62
Hmgb3O54879 Entpd2-201ENSMUST00000028328 1935 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Hmgb3O54879 Plcg1-203ENSMUST00000109462 5107 ntAPPRIS P1 TSL 5 BASIC11.19□□□□□ -0.62
Hmgb3O54879 Stx11-201ENSMUST00000042861 4173 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Hmgb3O54879 Arhgef37-201ENSMUST00000171629 3234 ntAPPRIS P1 TSL 5 BASIC11.19□□□□□ -0.62
Hmgb3O54879 Nsun7-204ENSMUST00000202994 3632 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Hmgb3O54879 1700029H14Rik-203ENSMUST00000134023 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC11.19□□□□□ -0.62
Hmgb3O54879 Pcdhb16-201ENSMUST00000051442 5225 ntAPPRIS P1 BASIC11.19□□□□□ -0.62
Hmgb3O54879 Prdm5-202ENSMUST00000031976 2155 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Hmgb3O54879 Exo1-201ENSMUST00000039725 7796 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Hmgb3O54879 1700020A23Rik-202ENSMUST00000110281 521 ntAPPRIS P1 TSL 3 BASIC11.19□□□□□ -0.62
Hmgb3O54879 Nudt1-204ENSMUST00000110826 606 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Hmgb3O54879 Rps13-ps4-201ENSMUST00000117927 456 ntBASIC11.19□□□□□ -0.62
Hmgb3O54879 Rps13-ps5-201ENSMUST00000117939 456 ntBASIC11.19□□□□□ -0.62
Hmgb3O54879 Gm15483-201ENSMUST00000120338 456 ntBASIC11.19□□□□□ -0.62
Hmgb3O54879 Gm11899-201ENSMUST00000142373 745 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Hmgb3O54879 A730015C16Rik-201ENSMUST00000164855 1221 ntAPPRIS P1 BASIC11.19□□□□□ -0.62
Hmgb3O54879 Eloc-203ENSMUST00000185771 742 ntAPPRIS P1 TSL 5 BASIC11.19□□□□□ -0.62
Hmgb3O54879 Gm43332-201ENSMUST00000202511 1044 ntBASIC11.19□□□□□ -0.62
Hmgb3O54879 Idh2-207ENSMUST00000206714 392 ntTSL 3 BASIC11.19□□□□□ -0.62
Hmgb3O54879 Eif3h-201ENSMUST00000022925 1295 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Hmgb3O54879 Dctn6-201ENSMUST00000033913 1249 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Hmgb3O54879 Ninl-201ENSMUST00000109896 5093 ntAPPRIS P1 TSL 5 BASIC11.19□□□□□ -0.62
Hmgb3O54879 Pcbp3-203ENSMUST00000105411 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC11.19□□□□□ -0.62
Hmgb3O54879 Vsx1-201ENSMUST00000046095 3791 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Hmgb3O54879 Myl6-202ENSMUST00000217733 1668 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Hmgb3O54879 Tbkbp1-204ENSMUST00000107615 3333 ntAPPRIS P2 TSL 5 BASIC11.19□□□□□ -0.62
Hmgb3O54879 Dcaf6-201ENSMUST00000027856 4110 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Hmgb3O54879 Sephs1-201ENSMUST00000027973 5319 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Hmgb3O54879 Cfp-201ENSMUST00000001156 1636 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Hmgb3O54879 Tpi1-205ENSMUST00000172132 1607 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Hmgb3O54879 Gm28729-201ENSMUST00000190704 1964 ntAPPRIS P1 TSL 5 BASIC11.19□□□□□ -0.62
Retrieved 100 of 76,532 protein–RNA pairs in 88.9 ms