Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Tcirg1-201ENSMUST00000001801 2688 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Chd3B1AR17 4632428C04Rik-201ENSMUST00000181485 2430 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Chd3B1AR17 Alox12e-201ENSMUST00000019051 2422 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Chd3B1AR17 Urgcp-206ENSMUST00000170116 5528 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
Chd3B1AR17 Slfn2-201ENSMUST00000038038 1664 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Chd3B1AR17 Mbtps2-201ENSMUST00000058098 4797 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Chd3B1AR17 Runx2-203ENSMUST00000113572 6463 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Chd3B1AR17 C2cd2-201ENSMUST00000170757 6555 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Chd3B1AR17 Lims1-203ENSMUST00000105468 1205 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Chd3B1AR17 Folr1-205ENSMUST00000106986 1286 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Chd3B1AR17 Gm11592-201ENSMUST00000133160 637 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Chd3B1AR17 Pisd-ps2-202ENSMUST00000142526 1175 ntBASIC13.25□□□□□ -0.29
Chd3B1AR17 Mb-202ENSMUST00000166179 1056 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Chd3B1AR17 Agtpbp1-213ENSMUST00000167096 508 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Chd3B1AR17 Mb-203ENSMUST00000169226 1106 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Chd3B1AR17 Ccdc70-201ENSMUST00000017193 1054 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Chd3B1AR17 Gm27486-201ENSMUST00000184923 80 ntBASIC13.25□□□□□ -0.29
Chd3B1AR17 Gm45784-201ENSMUST00000188360 142 ntBASIC13.25□□□□□ -0.29
Chd3B1AR17 Gm44780-201ENSMUST00000205409 581 ntTSL 3 BASIC13.25□□□□□ -0.29
Chd3B1AR17 4930502A04Rik-201ENSMUST00000214059 865 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Chd3B1AR17 Rrp36-201ENSMUST00000024766 1195 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Chd3B1AR17 Nkiras2-202ENSMUST00000051947 831 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Chd3B1AR17 Snora73a-201ENSMUST00000082453 205 ntBASIC13.25□□□□□ -0.29
Chd3B1AR17 Bcl11b-201ENSMUST00000066060 8111 ntAPPRIS P4 TSL 1 (best) BASIC13.25□□□□□ -0.29
Chd3B1AR17 Mfrp-205ENSMUST00000206308 4037 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
Chd3B1AR17 4732463B04Rik-201ENSMUST00000180751 2932 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Chd3B1AR17 Slc12a8-202ENSMUST00000117134 2081 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Chd3B1AR17 Gm5639-201ENSMUST00000122305 2403 ntBASIC13.25□□□□□ -0.29
Chd3B1AR17 Rcsd1-201ENSMUST00000040357 2622 ntAPPRIS P4 TSL 1 (best) BASIC13.25□□□□□ -0.29
Chd3B1AR17 Unc13a-201ENSMUST00000030170 10255 ntAPPRIS P2 TSL 5 BASIC13.25□□□□□ -0.29
Chd3B1AR17 Tmem198b-201ENSMUST00000051011 2335 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Chd3B1AR17 Shmt1-201ENSMUST00000018744 2858 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Chd3B1AR17 Cdc42ep1-201ENSMUST00000059619 2542 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Chd3B1AR17 Mrgprf-201ENSMUST00000033386 2087 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Chd3B1AR17 Ttll3-201ENSMUST00000032414 3168 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Chd3B1AR17 Cidec-201ENSMUST00000032416 1703 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Chd3B1AR17 Rpl18a-ps1-201ENSMUST00000161190 523 ntBASIC13.25□□□□□ -0.29
Chd3B1AR17 Gm7029-201ENSMUST00000173226 450 ntBASIC13.25□□□□□ -0.29
Chd3B1AR17 Gm27839-201ENSMUST00000184242 106 ntBASIC13.25□□□□□ -0.29
Chd3B1AR17 Gm43714-201ENSMUST00000198351 1204 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Chd3B1AR17 Il27-201ENSMUST00000058429 1021 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Chd3B1AR17 Gm6091-201ENSMUST00000098307 165 ntBASIC13.25□□□□□ -0.29
Chd3B1AR17 Glis3-202ENSMUST00000112612 3016 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Chd3B1AR17 Gm42853-201ENSMUST00000201273 1387 ntBASIC13.25□□□□□ -0.29
Chd3B1AR17 Pja1-202ENSMUST00000113790 2108 ntAPPRIS ALT2 TSL 2 BASIC13.25□□□□□ -0.29
Chd3B1AR17 Dhrs3-206ENSMUST00000154208 2337 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Chd3B1AR17 Tmem163-205ENSMUST00000185560 3488 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Chd3B1AR17 Frmd4b-203ENSMUST00000113355 4913 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Chd3B1AR17 Las1l-202ENSMUST00000113864 2581 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
Chd3B1AR17 Gtf3c5-202ENSMUST00000113889 2667 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Chd3B1AR17 Ick-203ENSMUST00000117330 2698 ntAPPRIS ALT2 TSL 2 BASIC13.24□□□□□ -0.29
Chd3B1AR17 Eif4g3-203ENSMUST00000084215 8134 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
Chd3B1AR17 Trim80-201ENSMUST00000093914 1934 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Chd3B1AR17 Pomgnt1-201ENSMUST00000106494 2226 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Chd3B1AR17 Pcnx2-204ENSMUST00000131127 3782 ntTSL 5 BASIC13.24□□□□□ -0.29
Chd3B1AR17 Gm30238-201ENSMUST00000195528 2603 ntBASIC13.24□□□□□ -0.29
Chd3B1AR17 Bmp3-202ENSMUST00000197143 2739 ntTSL 2 BASIC13.24□□□□□ -0.29
Chd3B1AR17 Gm13123-201ENSMUST00000122173 492 ntBASIC13.24□□□□□ -0.29
Chd3B1AR17 Drap1-209ENSMUST00000136579 734 ntTSL 2 BASIC13.24□□□□□ -0.29
Chd3B1AR17 Synj2bp-205ENSMUST00000169158 691 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Chd3B1AR17 Vhl-ps1-201ENSMUST00000174813 597 ntBASIC13.24□□□□□ -0.29
Chd3B1AR17 Gm27331-201ENSMUST00000183705 60 ntBASIC13.24□□□□□ -0.29
Chd3B1AR17 Mturn-202ENSMUST00000187701 503 ntTSL 5 BASIC13.24□□□□□ -0.29
Chd3B1AR17 Gm5149-201ENSMUST00000199768 620 ntTSL 3 BASIC13.24□□□□□ -0.29
Chd3B1AR17 Gm18054-201ENSMUST00000207539 555 ntBASIC13.24□□□□□ -0.29
Chd3B1AR17 Polr2h-201ENSMUST00000021405 950 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Chd3B1AR17 AC155237.1-201ENSMUST00000226196 1279 ntBASIC13.24□□□□□ -0.29
Chd3B1AR17 Itm2b-204ENSMUST00000228637 783 ntBASIC13.24□□□□□ -0.29
Chd3B1AR17 Sit1-201ENSMUST00000030180 1228 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Chd3B1AR17 Tmem256-201ENSMUST00000094065 492 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Chd3B1AR17 Slc8a3-201ENSMUST00000064594 4379 ntAPPRIS ALT1 TSL 5 BASIC13.24□□□□□ -0.29
Chd3B1AR17 Ildr2-201ENSMUST00000111416 8251 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Chd3B1AR17 Irak1-204ENSMUST00000114352 3825 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
Chd3B1AR17 Knop1-205ENSMUST00000116280 5382 ntAPPRIS P3 TSL 5 BASIC13.24□□□□□ -0.29
Chd3B1AR17 Sox11-201ENSMUST00000079063 8311 ntAPPRIS P1 BASIC13.24□□□□□ -0.29
Chd3B1AR17 Lrp2bp-202ENSMUST00000110380 1603 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Chd3B1AR17 C130050O18Rik-201ENSMUST00000052176 1532 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Chd3B1AR17 Glod4-201ENSMUST00000017430 1434 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Chd3B1AR17 Syt13-201ENSMUST00000028648 3761 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Chd3B1AR17 Kdm2a-201ENSMUST00000047898 8578 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Chd3B1AR17 Dnaaf5-201ENSMUST00000026975 3450 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Chd3B1AR17 Gm5466-201ENSMUST00000119395 1890 ntBASIC13.24□□□□□ -0.29
Chd3B1AR17 Xlr-202ENSMUST00000067782 1860 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Chd3B1AR17 Dnajb12-205ENSMUST00000147914 3041 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Chd3B1AR17 Stx5a-201ENSMUST00000010254 1780 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
Chd3B1AR17 Atp13a2-201ENSMUST00000037055 3956 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
Chd3B1AR17 Bap1-201ENSMUST00000022458 3460 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Chd3B1AR17 Gm8706-201ENSMUST00000197372 1491 ntBASIC13.24□□□□□ -0.29
Chd3B1AR17 Zkscan4-201ENSMUST00000062609 2400 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
Chd3B1AR17 Ptbp2-201ENSMUST00000029780 3364 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
Chd3B1AR17 Gm9755-201ENSMUST00000032981 1356 ntBASIC13.24□□□□□ -0.29
Chd3B1AR17 Txn2-202ENSMUST00000100486 676 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Chd3B1AR17 Zfp157-202ENSMUST00000100524 869 ntTSL 3 BASIC13.24□□□□□ -0.29
Chd3B1AR17 Tagln2-201ENSMUST00000111228 716 ntAPPRIS P1 TSL 3 BASIC13.24□□□□□ -0.29
Chd3B1AR17 Gm15371-201ENSMUST00000117057 784 ntBASIC13.24□□□□□ -0.29
Chd3B1AR17 Gm10156-201ENSMUST00000122364 462 ntBASIC13.24□□□□□ -0.29
Chd3B1AR17 Dnm3os-203ENSMUST00000185878 557 ntTSL 5 BASIC13.24□□□□□ -0.29
Chd3B1AR17 Gm43118-201ENSMUST00000199149 775 ntBASIC13.24□□□□□ -0.29
Chd3B1AR17 Gm38671-201ENSMUST00000200573 130 ntBASIC13.24□□□□□ -0.29
Chd3B1AR17 Gm45564-201ENSMUST00000210460 530 ntTSL 5 BASIC13.24□□□□□ -0.29
Retrieved 100 of 76,532 protein–RNA pairs in 30.8 ms