Protein–RNA interactions for Protein: Q9ES34

Ube3b, Ubiquitin-protein ligase E3B, mousemouse

Predictions only

Length 1,070 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube3bQ9ES34 Gm26559-201ENSMUST00000181939 2481 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Ube3bQ9ES34 Leng9-201ENSMUST00000058358 2460 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
Ube3bQ9ES34 Trib1-202ENSMUST00000118228 3081 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Ube3bQ9ES34 Emd-202ENSMUST00000088313 1338 ntTSL 2 BASIC16.11■□□□□ 0.17
Ube3bQ9ES34 Dnmt3l-208ENSMUST00000151242 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Ube3bQ9ES34 Nap1l1-203ENSMUST00000217908 1350 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Ube3bQ9ES34 Ulk1-211ENSMUST00000200299 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Ube3bQ9ES34 AC096628.2-201ENSMUST00000225443 1413 ntBASIC16.11■□□□□ 0.17
Ube3bQ9ES34 Matn3-201ENSMUST00000020899 3014 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Ube3bQ9ES34 Ncln-202ENSMUST00000118498 2841 ntAPPRIS ALT1 TSL 5 BASIC16.1■□□□□ 0.17
Ube3bQ9ES34 Cdk11b-203ENSMUST00000105600 3170 ntAPPRIS P3 TSL 5 BASIC16.1■□□□□ 0.17
Ube3bQ9ES34 Gm11725-201ENSMUST00000125607 1850 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Ube3bQ9ES34 Mark2-201ENSMUST00000025921 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Ube3bQ9ES34 Rab11fip2-201ENSMUST00000051996 4482 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Ube3bQ9ES34 Ccnj-202ENSMUST00000119316 3763 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
Ube3bQ9ES34 Rasgrp2-207ENSMUST00000113475 573 ntTSL 5 BASIC16.1■□□□□ 0.17
Ube3bQ9ES34 Gm16229-201ENSMUST00000133270 1232 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Ube3bQ9ES34 Gm15966-201ENSMUST00000136853 480 ntTSL 3 BASIC16.1■□□□□ 0.17
Ube3bQ9ES34 Smim17-203ENSMUST00000161855 664 ntAPPRIS P1 TSL 3 BASIC16.1■□□□□ 0.17
Ube3bQ9ES34 Gm16136-203ENSMUST00000162520 1121 ntTSL 2 BASIC16.1■□□□□ 0.17
Ube3bQ9ES34 Gm8810-201ENSMUST00000172895 754 ntBASIC16.1■□□□□ 0.17
Ube3bQ9ES34 Gm29649-201ENSMUST00000185649 419 ntBASIC16.1■□□□□ 0.17
Ube3bQ9ES34 Gm42442-201ENSMUST00000197951 1133 ntBASIC16.1■□□□□ 0.17
Ube3bQ9ES34 Gm34549-203ENSMUST00000208300 896 ntTSL 5 BASIC16.1■□□□□ 0.17
Ube3bQ9ES34 Rpl18-208ENSMUST00000211061 552 ntTSL 5 BASIC16.1■□□□□ 0.17
Ube3bQ9ES34 Tjap1-203ENSMUST00000180283 2368 ntAPPRIS P2 TSL 5 BASIC16.1■□□□□ 0.17
Ube3bQ9ES34 Camk2b-209ENSMUST00000109813 4023 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Ube3bQ9ES34 Camk2b-204ENSMUST00000090443 4004 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Ube3bQ9ES34 1700037C18Rik-202ENSMUST00000115859 2592 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Ube3bQ9ES34 Usp33-201ENSMUST00000026507 4153 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Ube3bQ9ES34 Gucy1a2-201ENSMUST00000115733 2243 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
Ube3bQ9ES34 Gm15684-201ENSMUST00000160605 1814 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Ube3bQ9ES34 Opn1sw-203ENSMUST00000147483 1426 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Ube3bQ9ES34 Dnmt3b-203ENSMUST00000081628 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Ube3bQ9ES34 Tmem184c-201ENSMUST00000034030 2678 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Ube3bQ9ES34 Fbxo21-206ENSMUST00000202447 3959 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
Ube3bQ9ES34 Kansl2-ps-201ENSMUST00000181818 1461 ntBASIC16.1■□□□□ 0.17
Ube3bQ9ES34 Lysmd3-202ENSMUST00000224300 4250 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
Ube3bQ9ES34 Foxj3-201ENSMUST00000044564 4789 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
Ube3bQ9ES34 Aqp6-201ENSMUST00000023754 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Ube3bQ9ES34 Rnps1-202ENSMUST00000115371 1617 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Ube3bQ9ES34 Sirt3-210ENSMUST00000211179 1606 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
Ube3bQ9ES34 Slc4a7-201ENSMUST00000057015 8132 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Ube3bQ9ES34 Krt32-201ENSMUST00000107419 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Ube3bQ9ES34 Cacng2-201ENSMUST00000019290 5510 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Ube3bQ9ES34 Miga2-208ENSMUST00000140075 2196 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Ube3bQ9ES34 Edil3-203ENSMUST00000118731 2721 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Ube3bQ9ES34 Mib1-201ENSMUST00000052838 10231 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Ube3bQ9ES34 Pwwp2a-201ENSMUST00000061070 3277 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Ube3bQ9ES34 Hus1b-201ENSMUST00000102943 1187 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
Ube3bQ9ES34 Rhox2f-201ENSMUST00000115173 799 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
Ube3bQ9ES34 Ice2-203ENSMUST00000117610 800 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Ube3bQ9ES34 Kctd20-203ENSMUST00000118762 3839 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Ube3bQ9ES34 Ccdc169-203ENSMUST00000118963 740 ntTSL 3 BASIC16.09■□□□□ 0.17
Ube3bQ9ES34 Gm20498-202ENSMUST00000164386 1043 ntTSL 2 BASIC16.09■□□□□ 0.17
Ube3bQ9ES34 Gm29127-201ENSMUST00000188304 517 ntBASIC16.09■□□□□ 0.17
Ube3bQ9ES34 Lamtor1-202ENSMUST00000193465 661 ntTSL 5 BASIC16.09■□□□□ 0.17
Ube3bQ9ES34 Gm44780-201ENSMUST00000205409 581 ntTSL 3 BASIC16.09■□□□□ 0.17
Ube3bQ9ES34 Gm32390-201ENSMUST00000212713 1172 ntBASIC16.09■□□□□ 0.17
Ube3bQ9ES34 AC159474.1-201ENSMUST00000218454 374 ntTSL 3 BASIC16.09■□□□□ 0.17
Ube3bQ9ES34 CT573086.1-201ENSMUST00000227202 1074 ntBASIC16.09■□□□□ 0.17
Ube3bQ9ES34 Cfc1-201ENSMUST00000027298 1040 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Ube3bQ9ES34 Gps2-201ENSMUST00000057884 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Ube3bQ9ES34 Ccdc169-202ENSMUST00000061099 887 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
Ube3bQ9ES34 Haus7-202ENSMUST00000077243 1032 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Ube3bQ9ES34 Gm11563-201ENSMUST00000092695 1012 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
Ube3bQ9ES34 Sf1-204ENSMUST00000113489 2863 ntTSL 5 BASIC16.09■□□□□ 0.17
Ube3bQ9ES34 Gm18630-201ENSMUST00000222109 1397 ntBASIC16.09■□□□□ 0.17
Ube3bQ9ES34 Abhd6-203ENSMUST00000225234 1958 ntBASIC16.09■□□□□ 0.17
Ube3bQ9ES34 Chd4-201ENSMUST00000056889 6697 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Ube3bQ9ES34 Tmem164-202ENSMUST00000101198 4443 ntTSL 3 BASIC16.09■□□□□ 0.17
Ube3bQ9ES34 Etnk2-201ENSMUST00000129213 2074 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
Ube3bQ9ES34 Pja1-202ENSMUST00000113790 2108 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
Ube3bQ9ES34 Mfsd3-201ENSMUST00000019224 2169 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Ube3bQ9ES34 Pcdha11-202ENSMUST00000115657 5360 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Ube3bQ9ES34 Dnmt3b-204ENSMUST00000088976 4130 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Ube3bQ9ES34 D6Ertd527e-204ENSMUST00000204927 2218 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
Ube3bQ9ES34 9130011E15Rik-201ENSMUST00000045396 2896 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
Ube3bQ9ES34 Cox10-201ENSMUST00000049091 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Ube3bQ9ES34 Prr33-201ENSMUST00000054910 2251 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
Ube3bQ9ES34 Fscn2-201ENSMUST00000026445 1713 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Ube3bQ9ES34 Slc4a1ap-201ENSMUST00000114533 2424 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.17
Ube3bQ9ES34 Gm5639-201ENSMUST00000122305 2403 ntBASIC16.08■□□□□ 0.17
Ube3bQ9ES34 Lypla1-201ENSMUST00000027036 2507 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Ube3bQ9ES34 Gtf3c5-202ENSMUST00000113889 2667 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Ube3bQ9ES34 Robo4-205ENSMUST00000214185 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Ube3bQ9ES34 Stxbp1-202ENSMUST00000077458 3616 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Ube3bQ9ES34 Umad1-204ENSMUST00000159433 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Ube3bQ9ES34 Gm6447-201ENSMUST00000118905 835 ntBASIC16.08■□□□□ 0.16
Ube3bQ9ES34 Gm24644-201ENSMUST00000157114 139 ntBASIC16.08■□□□□ 0.16
Ube3bQ9ES34 4930502A04Rik-201ENSMUST00000214059 865 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Ube3bQ9ES34 Fkbp7-201ENSMUST00000002809 860 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Ube3bQ9ES34 Slc12a4-201ENSMUST00000034370 3811 ntAPPRIS ALT1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Ube3bQ9ES34 Bst2-201ENSMUST00000051672 792 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Ube3bQ9ES34 Tldc2-201ENSMUST00000099140 608 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
Ube3bQ9ES34 Srsf10-202ENSMUST00000097844 3055 ntAPPRIS ALT1 TSL 2 BASIC16.08■□□□□ 0.16
Ube3bQ9ES34 Nt5c3b-203ENSMUST00000107397 1348 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Ube3bQ9ES34 Gm16244-201ENSMUST00000159313 2327 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Ube3bQ9ES34 Gm2885-201ENSMUST00000181895 1442 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Ube3bQ9ES34 Pgm2-201ENSMUST00000058351 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 44.2 ms