Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 P2rx3-202ENSMUST00000111613 1764 ntAPPRIS ALT1 TSL 5 BASIC12.77□□□□□ -0.36
Ddx28Q9CWT6 Spg7-202ENSMUST00000125975 2408 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
Ddx28Q9CWT6 Kcnj8-202ENSMUST00000203945 2548 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Ddx28Q9CWT6 Gga3-201ENSMUST00000019135 3816 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
Ddx28Q9CWT6 Gm40123-201ENSMUST00000198175 1027 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Ddx28Q9CWT6 Gm38102-201ENSMUST00000192791 1935 ntBASIC12.77□□□□□ -0.37
Ddx28Q9CWT6 Alox8-202ENSMUST00000094078 1947 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
Ddx28Q9CWT6 Rab11fip1-201ENSMUST00000033878 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Ddx28Q9CWT6 Coq4-201ENSMUST00000028137 1991 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Ddx28Q9CWT6 Atp6v1b1-201ENSMUST00000006431 1999 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Ddx28Q9CWT6 Rhbdl1-202ENSMUST00000183929 1349 ntTSL 5 BASIC12.77□□□□□ -0.37
Ddx28Q9CWT6 Tmub1-201ENSMUST00000030799 1333 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Ddx28Q9CWT6 Enpp1-203ENSMUST00000135846 2721 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Ddx28Q9CWT6 Ngef-201ENSMUST00000027477 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Ddx28Q9CWT6 Dcaf6-201ENSMUST00000027856 4110 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Ddx28Q9CWT6 Elf3-201ENSMUST00000003135 2095 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
Ddx28Q9CWT6 Arhgap11a-203ENSMUST00000110948 4878 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Ddx28Q9CWT6 Kansl3-205ENSMUST00000186470 2801 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Ddx28Q9CWT6 Gm27198-201ENSMUST00000184172 1517 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Ddx28Q9CWT6 Arxes2-201ENSMUST00000058119 1532 ntAPPRIS P1 BASIC12.77□□□□□ -0.37
Ddx28Q9CWT6 Ube2l6-201ENSMUST00000102642 1560 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Ddx28Q9CWT6 Arhgef4-201ENSMUST00000047664 3287 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Ddx28Q9CWT6 Drc1-201ENSMUST00000101448 2471 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Ddx28Q9CWT6 Phldb1-213ENSMUST00000144251 3589 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Ddx28Q9CWT6 Otx1-201ENSMUST00000006071 2789 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Ddx28Q9CWT6 Tacc3-202ENSMUST00000079534 2899 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
Ddx28Q9CWT6 Olfr95-202ENSMUST00000216318 4917 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
Ddx28Q9CWT6 Stk25-201ENSMUST00000027498 4249 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Ddx28Q9CWT6 Gm26847-201ENSMUST00000180407 2109 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Ddx28Q9CWT6 Gramd1b-201ENSMUST00000045682 7488 ntAPPRIS P2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Ddx28Q9CWT6 Pou4f2-201ENSMUST00000034115 3204 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Ddx28Q9CWT6 Kif3a-208ENSMUST00000173744 2257 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Ddx28Q9CWT6 Polr2i-202ENSMUST00000108192 508 ntTSL 2 BASIC12.76□□□□□ -0.37
Ddx28Q9CWT6 Romo1-203ENSMUST00000109598 362 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
Ddx28Q9CWT6 Gm13823-201ENSMUST00000119930 345 ntBASIC12.76□□□□□ -0.37
Ddx28Q9CWT6 Cmc2-202ENSMUST00000128304 394 ntTSL 5 BASIC12.76□□□□□ -0.37
Ddx28Q9CWT6 4930412M03Rik-201ENSMUST00000130746 1111 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Ddx28Q9CWT6 Gm8584-201ENSMUST00000171982 758 ntBASIC12.76□□□□□ -0.37
Ddx28Q9CWT6 Gm27164-201ENSMUST00000184359 723 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Ddx28Q9CWT6 6030443J06Rik-204ENSMUST00000195898 786 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Ddx28Q9CWT6 Gm30684-201ENSMUST00000205632 600 ntTSL 3 BASIC12.76□□□□□ -0.37
Ddx28Q9CWT6 Rps10-201ENSMUST00000025052 519 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Ddx28Q9CWT6 Gm6594-201ENSMUST00000097278 288 ntAPPRIS P1 BASIC12.76□□□□□ -0.37
Ddx28Q9CWT6 Pdgfra-205ENSMUST00000201711 4088 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Ddx28Q9CWT6 Tmem176b-203ENSMUST00000166247 1414 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Ddx28Q9CWT6 Ccdc88c-201ENSMUST00000068411 7542 ntAPPRIS P2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Ddx28Q9CWT6 Sgtb-201ENSMUST00000044385 3048 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Ddx28Q9CWT6 BC001981-202ENSMUST00000191393 1545 ntBASIC12.76□□□□□ -0.37
Ddx28Q9CWT6 Slc9a3r2-202ENSMUST00000019684 1688 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Ddx28Q9CWT6 Exosc5-206ENSMUST00000206561 1680 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Ddx28Q9CWT6 Morn1-201ENSMUST00000030915 1659 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Ddx28Q9CWT6 Gpc5-201ENSMUST00000022707 1719 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Ddx28Q9CWT6 Stk32b-201ENSMUST00000094836 3458 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Ddx28Q9CWT6 Bcl2l2-201ENSMUST00000022806 3509 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Ddx28Q9CWT6 Bmp2-201ENSMUST00000028836 3555 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Ddx28Q9CWT6 Cap2-201ENSMUST00000021802 3713 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Ddx28Q9CWT6 Bysl-201ENSMUST00000024783 3854 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Ddx28Q9CWT6 Pfkfb3-205ENSMUST00000114845 1971 ntTSL 5 BASIC12.76□□□□□ -0.37
Ddx28Q9CWT6 Myo6-204ENSMUST00000113268 7927 ntTSL 5 BASIC12.76□□□□□ -0.37
Ddx28Q9CWT6 Grik2-210ENSMUST00000220263 2085 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Ddx28Q9CWT6 1110032A03Rik-201ENSMUST00000042468 2082 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
Ddx28Q9CWT6 Osbpl10-204ENSMUST00000182384 2158 ntTSL 5 BASIC12.76□□□□□ -0.37
Ddx28Q9CWT6 Shmt2-206ENSMUST00000219239 2238 ntAPPRIS ALT1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Ddx28Q9CWT6 Ccdc155-201ENSMUST00000121017 2262 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Ddx28Q9CWT6 Gm5639-201ENSMUST00000122305 2403 ntBASIC12.76□□□□□ -0.37
Ddx28Q9CWT6 Necab1-201ENSMUST00000041606 4922 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Ddx28Q9CWT6 Tsku-204ENSMUST00000165901 2514 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Ddx28Q9CWT6 Mrpl58-209ENSMUST00000153983 2596 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Ddx28Q9CWT6 Nol4-206ENSMUST00000164186 2622 ntAPPRIS P4 TSL 5 BASIC12.75□□□□□ -0.37
Ddx28Q9CWT6 Agpat5-202ENSMUST00000149565 10779 ntAPPRIS P2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Ddx28Q9CWT6 Nek6-203ENSMUST00000112902 3147 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Ddx28Q9CWT6 Msh2-201ENSMUST00000024967 3283 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Ddx28Q9CWT6 Tmprss9-203ENSMUST00000219817 3581 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
Ddx28Q9CWT6 Map7-202ENSMUST00000116259 3831 ntAPPRIS P2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Ddx28Q9CWT6 Stx11-202ENSMUST00000163425 4032 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Ddx28Q9CWT6 Dpyd-201ENSMUST00000039177 4492 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Ddx28Q9CWT6 Park7-205ENSMUST00000105676 582 ntTSL 5 BASIC12.75□□□□□ -0.37
Ddx28Q9CWT6 Dcun1d3-203ENSMUST00000106519 1475 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
Ddx28Q9CWT6 Grk4-201ENSMUST00000001112 2408 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Ddx28Q9CWT6 Phka2-202ENSMUST00000112376 2310 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Ddx28Q9CWT6 Gm15957-201ENSMUST00000118893 974 ntBASIC12.75□□□□□ -0.37
Ddx28Q9CWT6 Gm6222-201ENSMUST00000120787 396 ntBASIC12.75□□□□□ -0.37
Ddx28Q9CWT6 Srr-204ENSMUST00000121738 3183 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Ddx28Q9CWT6 Gm12264-201ENSMUST00000123949 500 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Ddx28Q9CWT6 A530013C23Rik-201ENSMUST00000130679 2555 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Ddx28Q9CWT6 Gm15706-201ENSMUST00000139612 899 ntTSL 2 BASIC12.75□□□□□ -0.37
Ddx28Q9CWT6 Ddx27-205ENSMUST00000150571 2151 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Ddx28Q9CWT6 Gm13883-202ENSMUST00000151310 1156 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Ddx28Q9CWT6 Cdyl-202ENSMUST00000163595 3575 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Ddx28Q9CWT6 Tssk4-202ENSMUST00000164809 1686 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Ddx28Q9CWT6 Psap-203ENSMUST00000165878 2564 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Ddx28Q9CWT6 Gm29541-201ENSMUST00000191351 678 ntBASIC12.75□□□□□ -0.37
Ddx28Q9CWT6 Gm44608-201ENSMUST00000206827 855 ntBASIC12.75□□□□□ -0.37
Ddx28Q9CWT6 AC121801.1-201ENSMUST00000225363 1899 ntBASIC12.75□□□□□ -0.37
Ddx28Q9CWT6 AC121598.1-201ENSMUST00000228224 1019 ntBASIC12.75□□□□□ -0.37
Ddx28Q9CWT6 Prdx4-201ENSMUST00000026328 990 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Ddx28Q9CWT6 2810403A07Rik-201ENSMUST00000029696 2981 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Ddx28Q9CWT6 Sbk2-201ENSMUST00000032598 1139 ntAPPRIS P1 TSL 3 BASIC12.75□□□□□ -0.37
Ddx28Q9CWT6 H2bfm-201ENSMUST00000059808 1052 ntAPPRIS P1 BASIC12.75□□□□□ -0.37
Ddx28Q9CWT6 Grip1-202ENSMUST00000077871 3720 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 66.6 ms