Protein–RNA interactions for Protein: Q99K46

Usp11, Ubiquitin carboxyl-terminal hydrolase 11, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp11Q99K46 Hspb7-201ENSMUST00000102486 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Usp11Q99K46 Rbm47-206ENSMUST00000200775 3180 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Usp11Q99K46 Tyw1-203ENSMUST00000100662 1867 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Usp11Q99K46 1600002D24Rik-202ENSMUST00000136744 1854 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Usp11Q99K46 Gse1-201ENSMUST00000034279 7127 ntAPPRIS P4 TSL 1 (best) BASIC14.35□□□□□ -0.11
Usp11Q99K46 Abi1-201ENSMUST00000078977 3027 ntAPPRIS ALT1 TSL 5 BASIC14.35□□□□□ -0.11
Usp11Q99K46 Tmem86b-202ENSMUST00000205360 1344 ntTSL 2 BASIC14.35□□□□□ -0.11
Usp11Q99K46 Hdgfl2-212ENSMUST00000226053 2270 ntAPPRIS P2 BASIC14.35□□□□□ -0.11
Usp11Q99K46 Gan-201ENSMUST00000064488 2652 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Usp11Q99K46 Hsd3b7-203ENSMUST00000106272 1725 ntTSL 5 BASIC14.35□□□□□ -0.11
Usp11Q99K46 Gm6159-201ENSMUST00000191249 1724 ntBASIC14.35□□□□□ -0.11
Usp11Q99K46 Hnrnph2-201ENSMUST00000050331 1701 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Usp11Q99K46 Cep295nl-201ENSMUST00000103024 1944 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Usp11Q99K46 Cbl-206ENSMUST00000206147 3452 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
Usp11Q99K46 Gm43156-201ENSMUST00000202338 2127 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Usp11Q99K46 Gas2l3-207ENSMUST00000220128 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Usp11Q99K46 Nr1d1-201ENSMUST00000064941 2721 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Usp11Q99K46 Pkp3-202ENSMUST00000106039 2919 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Usp11Q99K46 Rwdd4a-201ENSMUST00000033973 2921 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
Usp11Q99K46 Chfr-201ENSMUST00000014812 3146 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Usp11Q99K46 Ankrd13c-201ENSMUST00000040787 3903 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Usp11Q99K46 Eya1-201ENSMUST00000027066 4347 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Usp11Q99K46 Prrxl1-202ENSMUST00000186452 2371 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Usp11Q99K46 Btrc-201ENSMUST00000065601 2978 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
Usp11Q99K46 Dhx37-201ENSMUST00000169485 4760 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Usp11Q99K46 Hmga2-203ENSMUST00000159699 3810 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Usp11Q99K46 Utp4-201ENSMUST00000047629 2232 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Usp11Q99K46 Gm17029-202ENSMUST00000146124 2899 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Usp11Q99K46 Myh3-202ENSMUST00000108689 6031 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Usp11Q99K46 Ptger3-201ENSMUST00000041175 3148 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Usp11Q99K46 Klf12-201ENSMUST00000097079 1856 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Usp11Q99K46 Snph-202ENSMUST00000094456 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Usp11Q99K46 Ahdc1-203ENSMUST00000105915 6341 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Usp11Q99K46 Opa3-201ENSMUST00000063976 3366 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Usp11Q99K46 Krtap1-3-201ENSMUST00000104930 879 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
Usp11Q99K46 Gm12151-201ENSMUST00000121374 290 ntBASIC14.34□□□□□ -0.11
Usp11Q99K46 Cd63-ps-201ENSMUST00000145417 875 ntBASIC14.34□□□□□ -0.11
Usp11Q99K46 Tm7sf2-209ENSMUST00000161528 732 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Usp11Q99K46 Mocs2-207ENSMUST00000166104 1193 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Usp11Q99K46 Baiap2l2-205ENSMUST00000170955 1058 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Usp11Q99K46 Gm20036-201ENSMUST00000177547 844 ntTSL 3 BASIC14.34□□□□□ -0.11
Usp11Q99K46 Naxd-205ENSMUST00000178721 1108 ntTSL 5 BASIC14.34□□□□□ -0.11
Usp11Q99K46 Gm3436-201ENSMUST00000179930 840 ntBASIC14.34□□□□□ -0.11
Usp11Q99K46 1010001B22Rik-201ENSMUST00000181488 589 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Usp11Q99K46 Gm26808-201ENSMUST00000181569 411 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Usp11Q99K46 Gm28942-201ENSMUST00000186334 365 ntTSL 3 BASIC14.34□□□□□ -0.11
Usp11Q99K46 Gm38094-201ENSMUST00000195864 2978 ntBASIC14.34□□□□□ -0.11
Usp11Q99K46 Ighv8-14-201ENSMUST00000196781 358 ntBASIC14.34□□□□□ -0.11
Usp11Q99K46 Gm43703-201ENSMUST00000200523 763 ntBASIC14.34□□□□□ -0.11
Usp11Q99K46 Pim2-204ENSMUST00000223553 1113 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Usp11Q99K46 Myl6b-201ENSMUST00000026428 1026 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Usp11Q99K46 Syce1l-201ENSMUST00000034219 896 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Usp11Q99K46 Hist1h2aa-201ENSMUST00000072391 390 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
Usp11Q99K46 Eln-201ENSMUST00000015138 3853 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Usp11Q99K46 Csk-209ENSMUST00000217314 2162 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Usp11Q99K46 Reln-201ENSMUST00000062372 10885 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Usp11Q99K46 Retreg1-202ENSMUST00000110438 1526 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Usp11Q99K46 Ginm1-204ENSMUST00000124838 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Usp11Q99K46 Ggt7-201ENSMUST00000029131 2614 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Usp11Q99K46 Ptk2-201ENSMUST00000110036 4184 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Usp11Q99K46 Fgfr3-215ENSMUST00000202138 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Usp11Q99K46 Gsdmd-201ENSMUST00000023238 1776 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Usp11Q99K46 Osbp2-202ENSMUST00000101632 2697 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Usp11Q99K46 Naa50-201ENSMUST00000063520 3557 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
Usp11Q99K46 Gorab-201ENSMUST00000045138 2538 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Usp11Q99K46 Sall4-201ENSMUST00000029061 5073 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Usp11Q99K46 Cacng3-201ENSMUST00000084615 2777 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Usp11Q99K46 Cacna1b-203ENSMUST00000100348 7182 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Usp11Q99K46 Pccb-201ENSMUST00000035116 2320 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Usp11Q99K46 Acox3-204ENSMUST00000114238 2825 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.11
Usp11Q99K46 Fbxo44-205ENSMUST00000151127 1403 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
Usp11Q99K46 Wnt9b-201ENSMUST00000018630 4518 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Usp11Q99K46 AI480526-202ENSMUST00000159637 1697 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
Usp11Q99K46 Vmn1r198-203ENSMUST00000226909 6259 ntAPPRIS P2 BASIC14.33□□□□□ -0.11
Usp11Q99K46 Grk4-201ENSMUST00000001112 2408 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Usp11Q99K46 Spata5-209ENSMUST00000198968 2916 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Usp11Q99K46 Dmbx1-201ENSMUST00000064806 5799 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Usp11Q99K46 Kcnj8-202ENSMUST00000203945 2548 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Usp11Q99K46 Alx1-205ENSMUST00000218282 2012 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
Usp11Q99K46 Mcfd2-202ENSMUST00000129616 813 ntAPPRIS P1 TSL 3 BASIC14.33□□□□□ -0.12
Usp11Q99K46 Lrrc3c-201ENSMUST00000142268 902 ntAPPRIS P1 TSL 3 BASIC14.33□□□□□ -0.12
Usp11Q99K46 Tgfb1i1-203ENSMUST00000163609 1053 ntTSL 5 BASIC14.33□□□□□ -0.12
Usp11Q99K46 Cox6b2-203ENSMUST00000182111 585 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Usp11Q99K46 Mir8102-201ENSMUST00000184148 139 ntBASIC14.33□□□□□ -0.12
Usp11Q99K46 Gm40493-201ENSMUST00000210223 400 ntTSL 3 BASIC14.33□□□□□ -0.12
Usp11Q99K46 Gm39228-201ENSMUST00000212456 301 ntTSL 5 BASIC14.33□□□□□ -0.12
Usp11Q99K46 Smdt1-201ENSMUST00000023086 705 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Usp11Q99K46 Selenow-201ENSMUST00000044355 736 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Usp11Q99K46 Map6-205ENSMUST00000207883 3431 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
Usp11Q99K46 Runx1t1-204ENSMUST00000105566 6090 ntAPPRIS ALT1 TSL 5 BASIC14.33□□□□□ -0.12
Usp11Q99K46 Rcsd1-202ENSMUST00000097474 5001 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Usp11Q99K46 Zyx-202ENSMUST00000164375 3188 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
Usp11Q99K46 Ticrr-201ENSMUST00000035977 7199 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Usp11Q99K46 Desi1-206ENSMUST00000152227 2934 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Usp11Q99K46 Grip1-202ENSMUST00000077871 3720 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Usp11Q99K46 Slc22a20-201ENSMUST00000041827 1897 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Usp11Q99K46 Kmt5c-203ENSMUST00000108583 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Usp11Q99K46 Lrrc17-201ENSMUST00000035651 2154 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Usp11Q99K46 Nub1-201ENSMUST00000068825 3269 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
Usp11Q99K46 Pax2-203ENSMUST00000174490 4358 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 54.6 ms