Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Agpat4-201ENSMUST00000024594 1915 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Ushbp1Q8R370 Asb10-202ENSMUST00000117900 1432 ntTSL 5 BASIC15.25■□□□□ 0.03
Ushbp1Q8R370 Pcdha1-202ENSMUST00000193839 4925 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Ushbp1Q8R370 Lrrc8a-202ENSMUST00000113654 4194 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
Ushbp1Q8R370 Slc8a2-202ENSMUST00000211649 5261 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
Ushbp1Q8R370 Aip-202ENSMUST00000117831 1378 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Ushbp1Q8R370 AC168058.1-201ENSMUST00000219521 2282 ntBASIC15.24■□□□□ 0.03
Ushbp1Q8R370 AC154262.2-201ENSMUST00000224310 2293 ntBASIC15.24■□□□□ 0.03
Ushbp1Q8R370 Klhl18-203ENSMUST00000198164 4538 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Ushbp1Q8R370 Ascc3-201ENSMUST00000035606 7760 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
Ushbp1Q8R370 Knop1-204ENSMUST00000106550 5524 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
Ushbp1Q8R370 Kcnk13-202ENSMUST00000160413 3061 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Ushbp1Q8R370 Xkr5-202ENSMUST00000095438 2838 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Ushbp1Q8R370 Nfyc-201ENSMUST00000043429 1932 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Ushbp1Q8R370 Acot6-202ENSMUST00000222921 3622 ntBASIC15.24■□□□□ 0.03
Ushbp1Q8R370 Erg-203ENSMUST00000113848 2139 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Ushbp1Q8R370 Flg-208ENSMUST00000180308 1076 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Ushbp1Q8R370 Spag7-201ENSMUST00000018431 1159 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Ushbp1Q8R370 Gm18934-201ENSMUST00000216671 1044 ntBASIC15.24■□□□□ 0.03
Ushbp1Q8R370 Gm19220-201ENSMUST00000222682 803 ntBASIC15.24■□□□□ 0.03
Ushbp1Q8R370 Pcgf1-201ENSMUST00000092614 866 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Ushbp1Q8R370 Tada3-203ENSMUST00000099118 1282 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Ushbp1Q8R370 Olfr1214-201ENSMUST00000099804 936 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
Ushbp1Q8R370 Galnt6-203ENSMUST00000161514 2746 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Ushbp1Q8R370 2700080J24Rik-201ENSMUST00000205314 1662 ntBASIC15.24■□□□□ 0.03
Ushbp1Q8R370 Enox1-201ENSMUST00000022589 3142 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Ushbp1Q8R370 Stpg2-202ENSMUST00000106239 2055 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
Ushbp1Q8R370 Lrp8os2-204ENSMUST00000188737 3078 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Ushbp1Q8R370 4930473A02Rik-202ENSMUST00000136793 1409 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Ushbp1Q8R370 Rtp3-201ENSMUST00000084922 1425 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
Ushbp1Q8R370 Eif4g3-203ENSMUST00000084215 8134 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
Ushbp1Q8R370 Gm14963-201ENSMUST00000146751 2558 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Ushbp1Q8R370 Syncrip-209ENSMUST00000174361 1767 ntTSL 5 BASIC15.24■□□□□ 0.03
Ushbp1Q8R370 Fggy-203ENSMUST00000107091 1395 ntTSL 5 BASIC15.24■□□□□ 0.03
Ushbp1Q8R370 Papd5-201ENSMUST00000066748 4489 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Ushbp1Q8R370 Olfr56-201ENSMUST00000056759 1925 ntTSL 5 BASIC15.23■□□□□ 0.03
Ushbp1Q8R370 Egr2-203ENSMUST00000127820 2665 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
Ushbp1Q8R370 Plod2-201ENSMUST00000070522 3649 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
Ushbp1Q8R370 Syt8-204ENSMUST00000118276 1503 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
Ushbp1Q8R370 Loxl2-202ENSMUST00000100420 3042 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Ushbp1Q8R370 2310022A10Rik-204ENSMUST00000187032 1871 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Ushbp1Q8R370 Ggt7-201ENSMUST00000029131 2614 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Ushbp1Q8R370 Usp16-202ENSMUST00000119504 2562 ntTSL 5 BASIC15.23■□□□□ 0.03
Ushbp1Q8R370 Ldha-ps-201ENSMUST00000119390 995 ntBASIC15.23■□□□□ 0.03
Ushbp1Q8R370 Klk12-201ENSMUST00000014063 924 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Ushbp1Q8R370 Cpne8-201ENSMUST00000014777 697 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Ushbp1Q8R370 Olfr455-201ENSMUST00000171307 954 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
Ushbp1Q8R370 Gm24420-201ENSMUST00000176676 59 ntBASIC15.23■□□□□ 0.03
Ushbp1Q8R370 Gm9002-201ENSMUST00000178437 499 ntBASIC15.23■□□□□ 0.03
Ushbp1Q8R370 Gm42846-201ENSMUST00000201771 514 ntTSL 3 BASIC15.23■□□□□ 0.03
Ushbp1Q8R370 Gm4756-204ENSMUST00000209038 990 ntTSL 5 BASIC15.23■□□□□ 0.03
Ushbp1Q8R370 Gm5425-201ENSMUST00000214125 459 ntBASIC15.23■□□□□ 0.03
Ushbp1Q8R370 Gm5035-201ENSMUST00000215581 927 ntBASIC15.23■□□□□ 0.03
Ushbp1Q8R370 Lrfn2-201ENSMUST00000046254 3202 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Ushbp1Q8R370 Ldhal6b-201ENSMUST00000189788 1445 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
Ushbp1Q8R370 Etl4-208ENSMUST00000114614 5898 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Ushbp1Q8R370 Sipa1-201ENSMUST00000071857 3868 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Ushbp1Q8R370 Src-202ENSMUST00000092576 3887 ntTSL 5 BASIC15.23■□□□□ 0.03
Ushbp1Q8R370 Eif4g3-215ENSMUST00000203828 5289 ntTSL 5 BASIC15.23■□□□□ 0.03
Ushbp1Q8R370 Pdlim2-210ENSMUST00000153735 1578 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Ushbp1Q8R370 Iffo2-201ENSMUST00000040023 5227 ntAPPRIS P3 TSL 5 BASIC15.23■□□□□ 0.03
Ushbp1Q8R370 Gm38577-201ENSMUST00000221531 4545 ntBASIC15.23■□□□□ 0.03
Ushbp1Q8R370 2310007B03Rik-202ENSMUST00000143419 2074 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Ushbp1Q8R370 Desi1-206ENSMUST00000152227 2934 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Ushbp1Q8R370 Enpp6-202ENSMUST00000119686 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Ushbp1Q8R370 F10-204ENSMUST00000128418 1395 ntTSL 5 BASIC15.23■□□□□ 0.03
Ushbp1Q8R370 Gatd1-201ENSMUST00000106008 1898 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Ushbp1Q8R370 Lrrc34-201ENSMUST00000029252 1891 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Ushbp1Q8R370 Wbp11-201ENSMUST00000116514 2739 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Ushbp1Q8R370 Bag6-203ENSMUST00000172571 3599 ntTSL 5 BASIC15.23■□□□□ 0.03
Ushbp1Q8R370 Hnrnpul1-201ENSMUST00000043765 3354 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Ushbp1Q8R370 1810058I24Rik-203ENSMUST00000152147 2521 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Ushbp1Q8R370 Matn3-201ENSMUST00000020899 3014 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Ushbp1Q8R370 Bend7-201ENSMUST00000056914 2302 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
Ushbp1Q8R370 Rlbp1-201ENSMUST00000053718 2134 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Ushbp1Q8R370 Clpb-202ENSMUST00000106998 2287 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Ushbp1Q8R370 Mst1-201ENSMUST00000035211 2262 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Ushbp1Q8R370 Micu1-202ENSMUST00000092508 2294 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Ushbp1Q8R370 Hoxd3-202ENSMUST00000111982 2413 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Ushbp1Q8R370 Gm16029-201ENSMUST00000161643 2427 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Ushbp1Q8R370 Gm4297-201ENSMUST00000119285 2579 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
Ushbp1Q8R370 Poli-205ENSMUST00000161542 2736 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Ushbp1Q8R370 Wfdc3-201ENSMUST00000103096 911 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Ushbp1Q8R370 Plod1-202ENSMUST00000105712 1059 ntTSL 2 BASIC15.22■□□□□ 0.03
Ushbp1Q8R370 Zfp936-202ENSMUST00000200973 578 ntTSL 3 BASIC15.22■□□□□ 0.03
Ushbp1Q8R370 Blvra-201ENSMUST00000002064 1160 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Ushbp1Q8R370 Tssc1-207ENSMUST00000222407 489 ntTSL 3 BASIC15.22■□□□□ 0.03
Ushbp1Q8R370 AC238811.3-201ENSMUST00000225422 709 ntBASIC15.22■□□□□ 0.03
Ushbp1Q8R370 Clps-201ENSMUST00000025062 550 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Ushbp1Q8R370 Gm11149-201ENSMUST00000068730 1250 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Ushbp1Q8R370 Cmc2-201ENSMUST00000078589 523 ntTSL 2 BASIC15.22■□□□□ 0.03
Ushbp1Q8R370 Maged2-201ENSMUST00000026302 2207 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
Ushbp1Q8R370 Cnmd-201ENSMUST00000022603 1433 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
Ushbp1Q8R370 Pde4dip-201ENSMUST00000045243 6185 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
Ushbp1Q8R370 Coro6-205ENSMUST00000108391 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Ushbp1Q8R370 Cfap157-201ENSMUST00000102813 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Ushbp1Q8R370 Nptn-206ENSMUST00000176557 1898 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Ushbp1Q8R370 Rdh10-201ENSMUST00000027053 3587 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Ushbp1Q8R370 Il1rn-204ENSMUST00000114487 2474 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Ushbp1Q8R370 Peli1-201ENSMUST00000093290 3514 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 34 ms