Protein–RNA interactions for Protein: Q8CEI3

Ccdc28a, Coiled-coil domain-containing 28A, mousemouse

Predictions only

Length 192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28aQ8CEI3 Trem2-201ENSMUST00000024791 1088 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ccdc28aQ8CEI3 Atp5h-202ENSMUST00000073791 659 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Ccdc28aQ8CEI3 Kcnip2-203ENSMUST00000086993 1005 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Ccdc28aQ8CEI3 Hoxaas3-202ENSMUST00000136806 2207 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Ccdc28aQ8CEI3 Tgm1-203ENSMUST00000178034 2730 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ccdc28aQ8CEI3 Mapk4-201ENSMUST00000091851 4594 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ccdc28aQ8CEI3 Fam103a1-202ENSMUST00000118190 1391 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ccdc28aQ8CEI3 Dclk2-206ENSMUST00000193632 2336 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.11
Ccdc28aQ8CEI3 Ap2a1-201ENSMUST00000085399 3442 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
Ccdc28aQ8CEI3 Sbsn-201ENSMUST00000080518 2221 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ccdc28aQ8CEI3 Celf3-201ENSMUST00000029784 2744 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ccdc28aQ8CEI3 Stau1-204ENSMUST00000109238 2976 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ccdc28aQ8CEI3 Sertad2-203ENSMUST00000109586 5515 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ccdc28aQ8CEI3 Sqle-201ENSMUST00000022977 2758 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ccdc28aQ8CEI3 Slc25a22-202ENSMUST00000106006 2277 ntTSL 5 BASIC14.33□□□□□ -0.12
Ccdc28aQ8CEI3 Hoga1-204ENSMUST00000172244 631 ntTSL 5 BASIC14.33□□□□□ -0.12
Ccdc28aQ8CEI3 Gm33320-201ENSMUST00000192232 530 ntBASIC14.33□□□□□ -0.12
Ccdc28aQ8CEI3 Gm9789-201ENSMUST00000062524 397 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
Ccdc28aQ8CEI3 Gm15500-202ENSMUST00000071641 1019 ntBASIC14.33□□□□□ -0.12
Ccdc28aQ8CEI3 Per1-206ENSMUST00000166748 4636 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ccdc28aQ8CEI3 Gria4-203ENSMUST00000163309 2338 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Ccdc28aQ8CEI3 Vcl-201ENSMUST00000022369 5267 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ccdc28aQ8CEI3 Tmem199-201ENSMUST00000052566 1347 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ccdc28aQ8CEI3 Zdhhc19-201ENSMUST00000064192 1323 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ccdc28aQ8CEI3 Aifm2-202ENSMUST00000080099 1329 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Ccdc28aQ8CEI3 Galnt6-201ENSMUST00000052069 3798 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ccdc28aQ8CEI3 Armcx1-203ENSMUST00000113197 2179 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ccdc28aQ8CEI3 Klk10-201ENSMUST00000014058 1373 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ccdc28aQ8CEI3 Sema4a-214ENSMUST00000166237 3046 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ccdc28aQ8CEI3 Ankrd50-201ENSMUST00000094300 1944 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Ccdc28aQ8CEI3 Pcbp3-203ENSMUST00000105411 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ccdc28aQ8CEI3 Vmn1r198-202ENSMUST00000226786 6195 ntAPPRIS P2 BASIC14.33□□□□□ -0.12
Ccdc28aQ8CEI3 Gm16090-201ENSMUST00000130296 1704 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Ccdc28aQ8CEI3 Ranbp17-202ENSMUST00000102815 5001 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ccdc28aQ8CEI3 Sp2-201ENSMUST00000062652 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ccdc28aQ8CEI3 Zbtb20-205ENSMUST00000114695 2977 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ccdc28aQ8CEI3 Cbs-203ENSMUST00000118504 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ccdc28aQ8CEI3 Ssr1-203ENSMUST00000225246 1825 ntBASIC14.32□□□□□ -0.12
Ccdc28aQ8CEI3 Prss36-201ENSMUST00000094026 3061 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
Ccdc28aQ8CEI3 Foxred2-202ENSMUST00000117725 4347 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ccdc28aQ8CEI3 Gm16010-202ENSMUST00000145410 4427 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Ccdc28aQ8CEI3 Ppil3-203ENSMUST00000114348 1033 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ccdc28aQ8CEI3 Izumo1r-203ENSMUST00000117620 1095 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Ccdc28aQ8CEI3 Gm29541-201ENSMUST00000191351 678 ntBASIC14.32□□□□□ -0.12
Ccdc28aQ8CEI3 4930432H08Rik-201ENSMUST00000198220 1284 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Ccdc28aQ8CEI3 AC124549.3-201ENSMUST00000225541 367 ntBASIC14.32□□□□□ -0.12
Ccdc28aQ8CEI3 Gm5771-201ENSMUST00000049079 798 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ccdc28aQ8CEI3 Draxin-201ENSMUST00000030862 5200 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ccdc28aQ8CEI3 Stxbp1-202ENSMUST00000077458 3616 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Ccdc28aQ8CEI3 Ralgps2-214ENSMUST00000191605 2958 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ccdc28aQ8CEI3 Pxdn-202ENSMUST00000122328 6614 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ccdc28aQ8CEI3 Ptpn6-201ENSMUST00000004377 2308 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ccdc28aQ8CEI3 Dcst1-201ENSMUST00000070820 2342 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ccdc28aQ8CEI3 Gsn-201ENSMUST00000028239 2653 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ccdc28aQ8CEI3 Pax6-202ENSMUST00000090397 3069 ntAPPRIS ALT1 TSL 5 BASIC14.32□□□□□ -0.12
Ccdc28aQ8CEI3 Degs2-202ENSMUST00000167978 1729 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Ccdc28aQ8CEI3 Rnf224-202ENSMUST00000205192 1707 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
Ccdc28aQ8CEI3 Cnppd1-201ENSMUST00000041213 2429 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ccdc28aQ8CEI3 Gzf1-201ENSMUST00000028928 4232 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ccdc28aQ8CEI3 Ppp1r18-205ENSMUST00000187690 3185 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ccdc28aQ8CEI3 Mcm8-201ENSMUST00000028831 3179 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ccdc28aQ8CEI3 Gm45706-201ENSMUST00000213063 2136 ntBASIC14.32□□□□□ -0.12
Ccdc28aQ8CEI3 Pla2g10-201ENSMUST00000023364 1423 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ccdc28aQ8CEI3 Tmprss9-203ENSMUST00000219817 3581 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
Ccdc28aQ8CEI3 Dnmt3b-208ENSMUST00000109772 4015 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ccdc28aQ8CEI3 Usp16-202ENSMUST00000119504 2562 ntTSL 5 BASIC14.31□□□□□ -0.12
Ccdc28aQ8CEI3 Slc13a5-201ENSMUST00000021161 3329 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ccdc28aQ8CEI3 Kbtbd6-201ENSMUST00000100359 2982 ntAPPRIS ALT2 BASIC14.31□□□□□ -0.12
Ccdc28aQ8CEI3 Kbtbd6-202ENSMUST00000226192 2984 ntAPPRIS P2 BASIC14.31□□□□□ -0.12
Ccdc28aQ8CEI3 Gm43134-201ENSMUST00000199434 1886 ntBASIC14.31□□□□□ -0.12
Ccdc28aQ8CEI3 Tom1-202ENSMUST00000165630 2267 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ccdc28aQ8CEI3 Ap4b1-203ENSMUST00000106823 2741 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Ccdc28aQ8CEI3 Bcl11a-202ENSMUST00000109514 5989 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ccdc28aQ8CEI3 Gm20632-201ENSMUST00000176760 2427 ntBASIC14.31□□□□□ -0.12
Ccdc28aQ8CEI3 Wnt9b-201ENSMUST00000018630 4518 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ccdc28aQ8CEI3 Rcsd1-202ENSMUST00000097474 5001 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ccdc28aQ8CEI3 Orai3-202ENSMUST00000118865 768 ntTSL 3 BASIC14.31□□□□□ -0.12
Ccdc28aQ8CEI3 Gm13365-201ENSMUST00000121188 973 ntBASIC14.31□□□□□ -0.12
Ccdc28aQ8CEI3 Gm16251-201ENSMUST00000162649 338 ntTSL 3 BASIC14.31□□□□□ -0.12
Ccdc28aQ8CEI3 Nnat-209ENSMUST00000173793 386 ntTSL 5 BASIC14.31□□□□□ -0.12
Ccdc28aQ8CEI3 Nptn-211ENSMUST00000177064 582 ntTSL 5 BASIC14.31□□□□□ -0.12
Ccdc28aQ8CEI3 Arfgap1-213ENSMUST00000184394 1209 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
Ccdc28aQ8CEI3 Nmur1-202ENSMUST00000212058 1287 ntAPPRIS P3 TSL 5 BASIC14.31□□□□□ -0.12
Ccdc28aQ8CEI3 AC131997.1-201ENSMUST00000228611 1229 ntBASIC14.31□□□□□ -0.12
Ccdc28aQ8CEI3 Tnp2-201ENSMUST00000051297 549 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ccdc28aQ8CEI3 Nanos3-201ENSMUST00000070102 730 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ccdc28aQ8CEI3 Hist1h2bn-201ENSMUST00000091709 381 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
Ccdc28aQ8CEI3 Tmem41b-201ENSMUST00000094097 3840 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ccdc28aQ8CEI3 Spon1-201ENSMUST00000046687 6161 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ccdc28aQ8CEI3 Tmem37-201ENSMUST00000056089 1311 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ccdc28aQ8CEI3 Ndc80-201ENSMUST00000024851 2201 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ccdc28aQ8CEI3 Fancc-202ENSMUST00000099444 2288 ntTSL 5 BASIC14.31□□□□□ -0.12
Ccdc28aQ8CEI3 Afdn-216ENSMUST00000170827 7338 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
Ccdc28aQ8CEI3 F10-204ENSMUST00000128418 1395 ntTSL 5 BASIC14.31□□□□□ -0.12
Ccdc28aQ8CEI3 Cadm2-202ENSMUST00000120594 3248 ntAPPRIS ALT1 TSL 5 BASIC14.31□□□□□ -0.12
Ccdc28aQ8CEI3 Gm16244-201ENSMUST00000159313 2327 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Ccdc28aQ8CEI3 Nfatc4-201ENSMUST00000024179 3267 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ccdc28aQ8CEI3 Ptgr2-208ENSMUST00000147363 1869 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Ccdc28aQ8CEI3 Snx13-201ENSMUST00000048519 6231 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ccdc28aQ8CEI3 Lpar5-203ENSMUST00000171989 1458 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 58 ms