Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Mocs1-204ENSMUST00000173033 2588 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Trim56Q80VI1 Dok7-203ENSMUST00000114270 2779 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Trim56Q80VI1 Catsper3-202ENSMUST00000109898 1311 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
Trim56Q80VI1 Ptpn6-201ENSMUST00000004377 2308 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
Trim56Q80VI1 Lrrc56-202ENSMUST00000070458 2502 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
Trim56Q80VI1 Ltbp4-203ENSMUST00000118583 4726 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
Trim56Q80VI1 Hnrnpf-203ENSMUST00000167182 2271 ntAPPRIS P1 TSL 3 BASIC16■□□□□ 0.15
Trim56Q80VI1 Gm42769-201ENSMUST00000198576 1659 ntBASIC16■□□□□ 0.15
Trim56Q80VI1 Gm15371-201ENSMUST00000117057 784 ntBASIC16■□□□□ 0.15
Trim56Q80VI1 Gm16175-201ENSMUST00000128181 248 ntTSL 3 BASIC16■□□□□ 0.15
Trim56Q80VI1 Gm6244-201ENSMUST00000178732 841 ntBASIC16■□□□□ 0.15
Trim56Q80VI1 Gm26894-201ENSMUST00000180828 1134 ntTSL 1 (best) BASIC16■□□□□ 0.15
Trim56Q80VI1 Carmn-202ENSMUST00000182244 988 ntTSL 2 BASIC16■□□□□ 0.15
Trim56Q80VI1 Gm7067-201ENSMUST00000207698 1249 ntBASIC16■□□□□ 0.15
Trim56Q80VI1 Fam24a-203ENSMUST00000207784 600 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Trim56Q80VI1 9230020A06Rik-204ENSMUST00000215201 1116 ntTSL 5 BASIC16■□□□□ 0.15
Trim56Q80VI1 AC125117.1-201ENSMUST00000228121 468 ntBASIC16■□□□□ 0.15
Trim56Q80VI1 Atp5d-201ENSMUST00000003156 931 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Trim56Q80VI1 Olfr373-201ENSMUST00000074540 945 ntAPPRIS P1 BASIC16■□□□□ 0.15
Trim56Q80VI1 Rn7sk-201ENSMUST00000083103 331 ntBASIC16■□□□□ 0.15
Trim56Q80VI1 Gm26315-201ENSMUST00000083890 321 ntBASIC16■□□□□ 0.15
Trim56Q80VI1 Pprc1-202ENSMUST00000099392 3956 ntTSL 1 (best) BASIC16■□□□□ 0.15
Trim56Q80VI1 Dnajb1-201ENSMUST00000005620 2996 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Trim56Q80VI1 Esrrb-202ENSMUST00000110203 2363 ntTSL 1 (best) BASIC16■□□□□ 0.15
Trim56Q80VI1 Mrpl44-201ENSMUST00000027464 1424 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Trim56Q80VI1 B3gat1-206ENSMUST00000161431 3858 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
Trim56Q80VI1 Adamts7-201ENSMUST00000113059 5379 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
Trim56Q80VI1 Caprin2-202ENSMUST00000111569 3697 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
Trim56Q80VI1 Gm5124-201ENSMUST00000127554 1970 ntTSL 5 BASIC16■□□□□ 0.15
Trim56Q80VI1 Naa15-201ENSMUST00000029303 6090 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Trim56Q80VI1 Gm26525-201ENSMUST00000180666 3616 ntTSL 1 (best) BASIC16■□□□□ 0.15
Trim56Q80VI1 Gm26867-201ENSMUST00000180963 3615 ntTSL 1 (best) BASIC16■□□□□ 0.15
Trim56Q80VI1 Gan-201ENSMUST00000064488 2652 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Trim56Q80VI1 Gnl3-201ENSMUST00000037739 1947 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Trim56Q80VI1 Wdyhv1-201ENSMUST00000067563 1383 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Trim56Q80VI1 Efr3b-201ENSMUST00000111178 6547 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Trim56Q80VI1 1700065D16Rik-205ENSMUST00000190890 2903 ntBASIC15.99■□□□□ 0.15
Trim56Q80VI1 Spata5-209ENSMUST00000198968 2916 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Trim56Q80VI1 1300002E11Rik-202ENSMUST00000181780 1650 ntTSL 2 BASIC15.99■□□□□ 0.15
Trim56Q80VI1 Dnajc30-201ENSMUST00000071263 1661 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
Trim56Q80VI1 Acin1-219ENSMUST00000148754 2373 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
Trim56Q80VI1 Pias3-202ENSMUST00000107076 2858 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Trim56Q80VI1 Igf2-202ENSMUST00000097936 2503 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
Trim56Q80VI1 Ptbp2-201ENSMUST00000029780 3364 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
Trim56Q80VI1 Lamc1-201ENSMUST00000027752 7622 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Trim56Q80VI1 Retsat-205ENSMUST00000176364 1647 ntTSL 5 BASIC15.99■□□□□ 0.15
Trim56Q80VI1 Inpp4a-209ENSMUST00000140264 3676 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Trim56Q80VI1 Mboat2-201ENSMUST00000078902 2467 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
Trim56Q80VI1 Ero1lb-202ENSMUST00000220811 3341 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Trim56Q80VI1 Prss45-201ENSMUST00000011391 1232 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Trim56Q80VI1 Gm11478-201ENSMUST00000117851 599 ntBASIC15.99■□□□□ 0.15
Trim56Q80VI1 Rpsa-ps9-201ENSMUST00000120702 885 ntBASIC15.99■□□□□ 0.15
Trim56Q80VI1 Prss41-202ENSMUST00000122936 1088 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Trim56Q80VI1 Klk12-201ENSMUST00000014063 924 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Trim56Q80VI1 4932443L11Rik-201ENSMUST00000148353 414 ntTSL 5 BASIC15.99■□□□□ 0.15
Trim56Q80VI1 Pmepa1os-201ENSMUST00000150185 680 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Trim56Q80VI1 Rpl18a-ps1-201ENSMUST00000161190 523 ntBASIC15.99■□□□□ 0.15
Trim56Q80VI1 Dpy30-202ENSMUST00000164832 799 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Trim56Q80VI1 Pde4a-202ENSMUST00000039413 4653 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
Trim56Q80VI1 Gm5519-201ENSMUST00000042061 513 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Trim56Q80VI1 Klhdc3-201ENSMUST00000071841 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Trim56Q80VI1 Rpl13a-ps1-201ENSMUST00000071866 612 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
Trim56Q80VI1 Plpp4-201ENSMUST00000094018 1256 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Trim56Q80VI1 Ttc8-202ENSMUST00000085109 2272 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Trim56Q80VI1 Syngap1-202ENSMUST00000177932 3927 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
Trim56Q80VI1 Zfp651-201ENSMUST00000093772 6353 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
Trim56Q80VI1 Cep85-201ENSMUST00000040271 3893 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Trim56Q80VI1 Olfr533-202ENSMUST00000211093 2397 ntAPPRIS P1 TSL 3 BASIC15.99■□□□□ 0.15
Trim56Q80VI1 Gm13848-201ENSMUST00000130777 2047 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Trim56Q80VI1 Umad1-204ENSMUST00000159433 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Trim56Q80VI1 Gm10729-202ENSMUST00000193403 1375 ntBASIC15.99■□□□□ 0.15
Trim56Q80VI1 Tmem163-205ENSMUST00000185560 3488 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Trim56Q80VI1 Gata2-202ENSMUST00000170089 3135 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Trim56Q80VI1 Kcng1-202ENSMUST00000109191 4089 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
Trim56Q80VI1 Uckl1-201ENSMUST00000057816 1849 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Trim56Q80VI1 Tfap2c-206ENSMUST00000170744 2776 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Trim56Q80VI1 Gxylt2-201ENSMUST00000032157 7658 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Trim56Q80VI1 AC154725.1-201ENSMUST00000224826 1961 ntBASIC15.98■□□□□ 0.15
Trim56Q80VI1 Mrap2-202ENSMUST00000113149 2112 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
Trim56Q80VI1 Ugt1a6a-201ENSMUST00000014263 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Trim56Q80VI1 Gm12500-202ENSMUST00000186471 2428 ntBASIC15.98■□□□□ 0.15
Trim56Q80VI1 Myh14-204ENSMUST00000207775 6499 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
Trim56Q80VI1 Rhbdd3-203ENSMUST00000109878 1611 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Trim56Q80VI1 Gm26770-201ENSMUST00000180586 2237 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Trim56Q80VI1 Mir692-1-201ENSMUST00000102263 109 ntBASIC15.98■□□□□ 0.15
Trim56Q80VI1 Selenoh-202ENSMUST00000102647 654 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
Trim56Q80VI1 Trav13d-2-201ENSMUST00000103596 264 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
Trim56Q80VI1 Trav13n-2-201ENSMUST00000103622 264 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
Trim56Q80VI1 Mos-201ENSMUST00000105158 1449 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
Trim56Q80VI1 Ngf-202ENSMUST00000106925 1187 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Trim56Q80VI1 H2afb1-201ENSMUST00000122446 348 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
Trim56Q80VI1 Tbx3os1-203ENSMUST00000140101 490 ntTSL 3 BASIC15.98■□□□□ 0.15
Trim56Q80VI1 Gm13066-201ENSMUST00000145263 884 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Trim56Q80VI1 Gm9002-201ENSMUST00000178437 499 ntBASIC15.98■□□□□ 0.15
Trim56Q80VI1 Lrcol1-202ENSMUST00000185691 764 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
Trim56Q80VI1 Gm43240-201ENSMUST00000198543 630 ntTSL 3 BASIC15.98■□□□□ 0.15
Trim56Q80VI1 Sox2ot-216ENSMUST00000200092 767 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Trim56Q80VI1 1600020E01Rik-206ENSMUST00000204663 2007 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Trim56Q80VI1 Gm7287-201ENSMUST00000205267 602 ntBASIC15.98■□□□□ 0.15
Trim56Q80VI1 0610005C13Rik-209ENSMUST00000211209 974 ntTSL 2 BASIC15.98■□□□□ 0.15
Retrieved 100 of 76,532 protein–RNA pairs in 26.2 ms