Protein–RNA interactions for Protein: Q6P8W9

Hmgb4, High mobility group protein B4, mousemouse

Predictions only

Length 181 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb4Q6P8W9 Trim2-203ENSMUST00000107691 7428 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Hmgb4Q6P8W9 Col3a1-201ENSMUST00000087883 5564 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Hmgb4Q6P8W9 Syvn1-201ENSMUST00000025723 2780 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Hmgb4Q6P8W9 Gm42872-201ENSMUST00000200026 1967 ntBASIC14.25□□□□□ -0.13
Hmgb4Q6P8W9 Gnas-204ENSMUST00000087877 3947 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Hmgb4Q6P8W9 Grb10-201ENSMUST00000093321 5061 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Hmgb4Q6P8W9 Pank1-201ENSMUST00000036584 3460 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Hmgb4Q6P8W9 Nfatc1-202ENSMUST00000078049 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Hmgb4Q6P8W9 Epsti1-201ENSMUST00000022591 1870 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Hmgb4Q6P8W9 Metap2-206ENSMUST00000180840 2551 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Hmgb4Q6P8W9 Lrrc56-202ENSMUST00000070458 2502 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Hmgb4Q6P8W9 Mcur1-201ENSMUST00000021800 4339 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Hmgb4Q6P8W9 Chd1-202ENSMUST00000024627 7916 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Hmgb4Q6P8W9 Eci2-211ENSMUST00000171229 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Hmgb4Q6P8W9 Mbtd1-201ENSMUST00000063645 2138 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Hmgb4Q6P8W9 Rassf5-201ENSMUST00000027688 3485 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Hmgb4Q6P8W9 Vegfa-202ENSMUST00000071648 3451 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Hmgb4Q6P8W9 Hadhb-201ENSMUST00000026841 2033 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Hmgb4Q6P8W9 Spag8-202ENSMUST00000107870 1342 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Hmgb4Q6P8W9 Syngap1-202ENSMUST00000177932 3927 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
Hmgb4Q6P8W9 D230025D16Rik-201ENSMUST00000034361 2916 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Hmgb4Q6P8W9 Saa1-201ENSMUST00000128088 609 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Hmgb4Q6P8W9 Rpl13a-201ENSMUST00000150350 1047 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Hmgb4Q6P8W9 Ffar3-202ENSMUST00000185748 1234 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
Hmgb4Q6P8W9 Gm5149-201ENSMUST00000199768 620 ntTSL 3 BASIC14.24□□□□□ -0.13
Hmgb4Q6P8W9 Gm15411-202ENSMUST00000201913 668 ntTSL 3 BASIC14.24□□□□□ -0.13
Hmgb4Q6P8W9 Fam24a-203ENSMUST00000207784 600 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Hmgb4Q6P8W9 Pomc-202ENSMUST00000218089 977 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Hmgb4Q6P8W9 Txn1-201ENSMUST00000030051 1051 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Hmgb4Q6P8W9 Slc12a4-201ENSMUST00000034370 3811 ntAPPRIS ALT1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Hmgb4Q6P8W9 Iqcf4-201ENSMUST00000085111 756 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Hmgb4Q6P8W9 Tex13c3-201ENSMUST00000089246 876 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Hmgb4Q6P8W9 Snx22-201ENSMUST00000044711 2543 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Hmgb4Q6P8W9 Bpifa6-201ENSMUST00000109753 1572 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Hmgb4Q6P8W9 Dmrta1-201ENSMUST00000052478 4079 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Hmgb4Q6P8W9 Ccdc85a-201ENSMUST00000042534 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Hmgb4Q6P8W9 1500015A07Rik-201ENSMUST00000184181 1865 ntBASIC14.24□□□□□ -0.13
Hmgb4Q6P8W9 Vangl1-201ENSMUST00000029453 6531 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Hmgb4Q6P8W9 Trim15-201ENSMUST00000025329 1843 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Hmgb4Q6P8W9 Pdpn-201ENSMUST00000030317 1817 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Hmgb4Q6P8W9 Ero1lb-202ENSMUST00000220811 3341 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Hmgb4Q6P8W9 Usp19-201ENSMUST00000006854 4791 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Hmgb4Q6P8W9 Palm2-202ENSMUST00000102905 3271 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
Hmgb4Q6P8W9 Prickle3-203ENSMUST00000129662 2376 ntAPPRIS ALT2 TSL 2 BASIC14.24□□□□□ -0.13
Hmgb4Q6P8W9 Zfp367-201ENSMUST00000059817 3532 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Hmgb4Q6P8W9 Clec16a-205ENSMUST00000115827 2949 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Hmgb4Q6P8W9 Keap1-205ENSMUST00000194542 3151 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Hmgb4Q6P8W9 Lysmd4-201ENSMUST00000058771 2898 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Hmgb4Q6P8W9 B430305J03Rik-201ENSMUST00000066298 3702 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
Hmgb4Q6P8W9 Gm19461-205ENSMUST00000191207 2566 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Hmgb4Q6P8W9 Prrt3-202ENSMUST00000204134 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Hmgb4Q6P8W9 Grin2c-201ENSMUST00000003351 4279 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
Hmgb4Q6P8W9 Pear1-205ENSMUST00000172621 4490 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Hmgb4Q6P8W9 Hsd17b11-202ENSMUST00000119025 2234 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Hmgb4Q6P8W9 Rab37-201ENSMUST00000021076 2210 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
Hmgb4Q6P8W9 Atp13a2-203ENSMUST00000127833 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Hmgb4Q6P8W9 Tcn2-204ENSMUST00000109990 1914 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Hmgb4Q6P8W9 Aire-207ENSMUST00000140636 1615 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Hmgb4Q6P8W9 Edc4-201ENSMUST00000040254 4780 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Hmgb4Q6P8W9 Apln-201ENSMUST00000039026 3149 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Hmgb4Q6P8W9 Eaf2-204ENSMUST00000114829 1030 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Hmgb4Q6P8W9 1700037F24Rik-201ENSMUST00000181254 973 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Hmgb4Q6P8W9 Ighv1-51-201ENSMUST00000192903 354 ntBASIC14.23□□□□□ -0.13
Hmgb4Q6P8W9 Il31-203ENSMUST00000198901 984 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Hmgb4Q6P8W9 Gm19078-201ENSMUST00000206311 727 ntBASIC14.23□□□□□ -0.13
Hmgb4Q6P8W9 1700123K08Rik-201ENSMUST00000031501 1047 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Hmgb4Q6P8W9 Mrps17-201ENSMUST00000042191 832 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Hmgb4Q6P8W9 Fau-201ENSMUST00000043074 574 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Hmgb4Q6P8W9 6430531B16Rik-201ENSMUST00000097970 1161 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
Hmgb4Q6P8W9 Pip5k1c-201ENSMUST00000045469 4323 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Hmgb4Q6P8W9 Cybrd1-201ENSMUST00000028403 5339 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Hmgb4Q6P8W9 Hoxa7-201ENSMUST00000048715 2009 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Hmgb4Q6P8W9 Gm37411-201ENSMUST00000194180 2282 ntBASIC14.23□□□□□ -0.13
Hmgb4Q6P8W9 Dlst-201ENSMUST00000053811 2764 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Hmgb4Q6P8W9 Qsox1-202ENSMUST00000111764 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Hmgb4Q6P8W9 Gpt-201ENSMUST00000023203 1749 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Hmgb4Q6P8W9 Ttll3-206ENSMUST00000204026 1472 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Hmgb4Q6P8W9 Klhl32-204ENSMUST00000108218 7143 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
Hmgb4Q6P8W9 Nrap-201ENSMUST00000040711 5334 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Hmgb4Q6P8W9 Gm45630-201ENSMUST00000210243 1911 ntBASIC14.23□□□□□ -0.13
Hmgb4Q6P8W9 Wapl-205ENSMUST00000169910 4066 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
Hmgb4Q6P8W9 Gm5912-201ENSMUST00000122282 1438 ntBASIC14.23□□□□□ -0.13
Hmgb4Q6P8W9 Gm10371-201ENSMUST00000127429 1411 ntTSL 2 BASIC14.23□□□□□ -0.13
Hmgb4Q6P8W9 Clec4g-201ENSMUST00000058040 1441 ntTSL 5 BASIC14.23□□□□□ -0.13
Hmgb4Q6P8W9 Ccdc92b-201ENSMUST00000100866 4002 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Hmgb4Q6P8W9 Prn-201ENSMUST00000124100 2132 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
Hmgb4Q6P8W9 Nr2f2-201ENSMUST00000032768 4222 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Hmgb4Q6P8W9 Gatd1-201ENSMUST00000106008 1898 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Hmgb4Q6P8W9 Adat1-203ENSMUST00000139820 2762 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Hmgb4Q6P8W9 Abtb2-201ENSMUST00000076212 4558 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Hmgb4Q6P8W9 Kif9-204ENSMUST00000198043 2233 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Hmgb4Q6P8W9 AC114008.2-201ENSMUST00000227699 1347 ntBASIC14.22□□□□□ -0.13
Hmgb4Q6P8W9 Fam122b-203ENSMUST00000114841 3074 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Hmgb4Q6P8W9 Cpt2-201ENSMUST00000030345 2372 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Hmgb4Q6P8W9 Sgsm1-201ENSMUST00000048112 5161 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Hmgb4Q6P8W9 Cd72-202ENSMUST00000098104 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Hmgb4Q6P8W9 Ube3a-201ENSMUST00000107537 4911 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Hmgb4Q6P8W9 Gps1-201ENSMUST00000100134 1925 ntTSL 2 BASIC14.22□□□□□ -0.13
Hmgb4Q6P8W9 Gak-201ENSMUST00000046603 4453 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Hmgb4Q6P8W9 Gm10369-201ENSMUST00000100641 1148 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 37.7 ms