Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Rbmx-203ENSMUST00000114730 2019 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
Trim28Q62318 Dnpep-209ENSMUST00000187836 1862 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trim28Q62318 Saxo1-201ENSMUST00000030216 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trim28Q62318 Klf12-201ENSMUST00000097079 1856 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trim28Q62318 Anks1b-204ENSMUST00000179337 2692 ntTSL 5 BASIC17.5■□□□□ 0.39
Trim28Q62318 Papola-202ENSMUST00000109901 4380 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trim28Q62318 Cox4i2-201ENSMUST00000010020 727 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trim28Q62318 Aurkaip1-202ENSMUST00000105591 773 ntAPPRIS P1 TSL 3 BASIC17.5■□□□□ 0.39
Trim28Q62318 4930579D09Rik-201ENSMUST00000132321 469 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Trim28Q62318 Nudt17-202ENSMUST00000171249 1110 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trim28Q62318 Pced1c-ps-201ENSMUST00000187740 751 ntBASIC17.5■□□□□ 0.39
Trim28Q62318 Olfr521-201ENSMUST00000098263 967 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
Trim28Q62318 Ccdc33-202ENSMUST00000098681 1093 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Trim28Q62318 Cops5-201ENSMUST00000027050 1698 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trim28Q62318 Men1-202ENSMUST00000078137 2738 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Trim28Q62318 Wwox-203ENSMUST00000109108 1771 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Trim28Q62318 Tmem184c-201ENSMUST00000034030 2678 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trim28Q62318 Ube2g1-203ENSMUST00000138247 3931 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Trim28Q62318 Art3-206ENSMUST00000120416 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trim28Q62318 Ankmy2-201ENSMUST00000041640 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trim28Q62318 Cacna1a-201ENSMUST00000121390 7926 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trim28Q62318 Rnf220-202ENSMUST00000094853 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trim28Q62318 Ppp2r2c-201ENSMUST00000031003 4088 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trim28Q62318 Gm10327-201ENSMUST00000105222 1002 ntBASIC17.49■□□□□ 0.39
Trim28Q62318 Gm15198-201ENSMUST00000117283 177 ntBASIC17.49■□□□□ 0.39
Trim28Q62318 Gm12363-201ENSMUST00000122250 668 ntBASIC17.49■□□□□ 0.39
Trim28Q62318 P2rx4-204ENSMUST00000139631 1030 ntTSL 5 BASIC17.49■□□□□ 0.39
Trim28Q62318 P2rx4-206ENSMUST00000142664 1111 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Trim28Q62318 Mmgt2-207ENSMUST00000155759 589 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trim28Q62318 Psme1-202ENSMUST00000172738 681 ntTSL 5 BASIC17.49■□□□□ 0.39
Trim28Q62318 Atp6v0c-ps1-201ENSMUST00000206596 463 ntBASIC17.49■□□□□ 0.39
Trim28Q62318 Gm20083-202ENSMUST00000206663 1008 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Trim28Q62318 Wfdc1-202ENSMUST00000212901 921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trim28Q62318 Gm4935-201ENSMUST00000221316 1198 ntBASIC17.49■□□□□ 0.39
Trim28Q62318 Comt-201ENSMUST00000000335 1178 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trim28Q62318 Gemin7-201ENSMUST00000051364 763 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trim28Q62318 Olfr1423-201ENSMUST00000087831 933 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
Trim28Q62318 Fmnl2-205ENSMUST00000155586 3939 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Trim28Q62318 Ctbp2-209ENSMUST00000166439 1997 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Trim28Q62318 Zfp82-201ENSMUST00000080834 2181 ntAPPRIS P3 TSL 5 BASIC17.49■□□□□ 0.39
Trim28Q62318 Agpat4-201ENSMUST00000024594 1915 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trim28Q62318 Zfp109-201ENSMUST00000037448 1935 ntAPPRIS P2 TSL 5 BASIC17.49■□□□□ 0.39
Trim28Q62318 Sdccag8-202ENSMUST00000056773 1551 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Trim28Q62318 Cxcr5-201ENSMUST00000062215 2614 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trim28Q62318 Ccdc94-201ENSMUST00000086869 1311 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trim28Q62318 Klc2-201ENSMUST00000025798 2940 ntTSL 5 BASIC17.48■□□□□ 0.39
Trim28Q62318 Ap1s2-201ENSMUST00000033734 1785 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trim28Q62318 Mrs2-201ENSMUST00000021772 7035 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
Trim28Q62318 Ccne2-201ENSMUST00000029866 3006 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trim28Q62318 Spns1-201ENSMUST00000032994 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trim28Q62318 Abi3-201ENSMUST00000059026 4006 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trim28Q62318 Trhde-201ENSMUST00000061632 5714 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trim28Q62318 Slc46a3-201ENSMUST00000031655 2434 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trim28Q62318 Wdr47-201ENSMUST00000051145 4222 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trim28Q62318 Emilin3-201ENSMUST00000057169 3547 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trim28Q62318 A430005L14Rik-202ENSMUST00000105645 977 ntTSL 3 BASIC17.48■□□□□ 0.39
Trim28Q62318 Fgf18-202ENSMUST00000109363 991 ntTSL 3 BASIC17.48■□□□□ 0.39
Trim28Q62318 Gm11591-201ENSMUST00000120063 702 ntBASIC17.48■□□□□ 0.39
Trim28Q62318 Myadml2os-201ENSMUST00000126642 1044 ntTSL 5 BASIC17.48■□□□□ 0.39
Trim28Q62318 Snhg20-201ENSMUST00000145438 459 ntTSL 3 BASIC17.48■□□□□ 0.39
Trim28Q62318 Pigyl-202ENSMUST00000148088 676 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
Trim28Q62318 Gm44985-201ENSMUST00000206202 1016 ntBASIC17.48■□□□□ 0.39
Trim28Q62318 AC135669.1-202ENSMUST00000216742 540 ntBASIC17.48■□□□□ 0.39
Trim28Q62318 Hbb-bs-201ENSMUST00000023934 628 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trim28Q62318 Lcn10-201ENSMUST00000058912 1106 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trim28Q62318 Gm38049-201ENSMUST00000195698 1372 ntBASIC17.48■□□□□ 0.39
Trim28Q62318 1600020E01Rik-206ENSMUST00000204663 2007 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Trim28Q62318 Fam169b-201ENSMUST00000098378 2776 ntTSL 5 BASIC17.48■□□□□ 0.39
Trim28Q62318 Gm11405-201ENSMUST00000118689 1556 ntBASIC17.48■□□□□ 0.39
Trim28Q62318 H2-T22-202ENSMUST00000077960 1694 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trim28Q62318 Smpd1-201ENSMUST00000046983 2412 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trim28Q62318 Gpr135-201ENSMUST00000050649 3150 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
Trim28Q62318 Gsdmd-201ENSMUST00000023238 1776 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trim28Q62318 Pde9a-203ENSMUST00000127929 1891 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trim28Q62318 Rcsd1-201ENSMUST00000040357 2622 ntAPPRIS P4 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trim28Q62318 Ngef-201ENSMUST00000027477 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trim28Q62318 Hsp90b1-201ENSMUST00000020238 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trim28Q62318 5330426L24Rik-201ENSMUST00000200008 2175 ntBASIC17.47■□□□□ 0.39
Trim28Q62318 1190002N15Rik-201ENSMUST00000113028 3950 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trim28Q62318 Prrg3-203ENSMUST00000170096 3408 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trim28Q62318 Hnrnpm-202ENSMUST00000114385 2550 ntTSL 2 BASIC17.47■□□□□ 0.39
Trim28Q62318 Il17rd-203ENSMUST00000225146 3366 ntBASIC17.47■□□□□ 0.39
Trim28Q62318 Fgf8-203ENSMUST00000111924 630 ntTSL 5 BASIC17.47■□□□□ 0.39
Trim28Q62318 Rpl3-ps2-201ENSMUST00000117131 1214 ntBASIC17.47■□□□□ 0.39
Trim28Q62318 Gm5940-201ENSMUST00000117582 1068 ntBASIC17.47■□□□□ 0.39
Trim28Q62318 Gm15635-202ENSMUST00000131160 917 ntTSL 3 BASIC17.47■□□□□ 0.39
Trim28Q62318 1700012C08Rik-201ENSMUST00000141554 363 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Trim28Q62318 4930524O07Rik-201ENSMUST00000161822 1050 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Trim28Q62318 Rab11b-ps2-201ENSMUST00000178377 657 ntBASIC17.47■□□□□ 0.39
Trim28Q62318 4930594M17Rik-201ENSMUST00000181204 1033 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Trim28Q62318 Mir6420-201ENSMUST00000185032 102 ntBASIC17.47■□□□□ 0.39
Trim28Q62318 Gm5850-201ENSMUST00000192923 1206 ntBASIC17.47■□□□□ 0.39
Trim28Q62318 Gm37008-201ENSMUST00000195712 319 ntBASIC17.47■□□□□ 0.39
Trim28Q62318 Msra-205ENSMUST00000210428 1180 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Trim28Q62318 Gm45880-201ENSMUST00000213041 853 ntBASIC17.47■□□□□ 0.39
Trim28Q62318 AC154595.3-201ENSMUST00000224579 384 ntBASIC17.47■□□□□ 0.39
Trim28Q62318 Gm7399-201ENSMUST00000032395 858 ntBASIC17.47■□□□□ 0.39
Trim28Q62318 Dlat-201ENSMUST00000034567 4035 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trim28Q62318 Gm42853-201ENSMUST00000201273 1387 ntBASIC17.47■□□□□ 0.39
Trim28Q62318 Dnmt3b-201ENSMUST00000056495 4318 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 29.4 ms