Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Gm45743-201ENSMUST00000212701 2795 ntBASIC12.74□□□□□ -0.37
Trim40Q3UWA4 Msantd3-202ENSMUST00000064807 1378 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Trim40Q3UWA4 Snap23-202ENSMUST00000110711 2723 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Trim40Q3UWA4 Plekhb1-202ENSMUST00000107043 931 ntTSL 2 BASIC12.74□□□□□ -0.37
Trim40Q3UWA4 Gm11543-201ENSMUST00000120758 370 ntBASIC12.74□□□□□ -0.37
Trim40Q3UWA4 Plpp7-202ENSMUST00000140762 634 ntTSL 3 BASIC12.74□□□□□ -0.37
Trim40Q3UWA4 Smim12-201ENSMUST00000142029 1022 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Trim40Q3UWA4 Ankrd65-202ENSMUST00000165000 1140 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
Trim40Q3UWA4 Gm3809-201ENSMUST00000180973 1006 ntBASIC12.74□□□□□ -0.37
Trim40Q3UWA4 Gm3764-206ENSMUST00000181356 1088 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Trim40Q3UWA4 Gm29909-201ENSMUST00000214500 922 ntTSL 5 BASIC12.74□□□□□ -0.37
Trim40Q3UWA4 Gm7229-201ENSMUST00000214719 1007 ntBASIC12.74□□□□□ -0.37
Trim40Q3UWA4 Dnal1-201ENSMUST00000046340 790 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Trim40Q3UWA4 Gm7461-201ENSMUST00000058918 827 ntBASIC12.74□□□□□ -0.37
Trim40Q3UWA4 2900089D17Rik-201ENSMUST00000124015 2475 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Trim40Q3UWA4 Nub1-202ENSMUST00000197407 3546 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Trim40Q3UWA4 Astl-204ENSMUST00000179618 2236 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
Trim40Q3UWA4 Dnajc5-201ENSMUST00000072334 6578 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Trim40Q3UWA4 4930458D05Rik-201ENSMUST00000142871 3055 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Trim40Q3UWA4 F2-202ENSMUST00000111335 1969 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
Trim40Q3UWA4 9130011E15Rik-201ENSMUST00000045396 2896 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
Trim40Q3UWA4 2310022A10Rik-204ENSMUST00000187032 1871 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Trim40Q3UWA4 Gm43134-201ENSMUST00000199434 1886 ntBASIC12.74□□□□□ -0.37
Trim40Q3UWA4 Sqle-201ENSMUST00000022977 2758 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Trim40Q3UWA4 Sgip1-201ENSMUST00000066824 4305 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Trim40Q3UWA4 Pja1-201ENSMUST00000036354 2563 ntAPPRIS P4 TSL 1 (best) BASIC12.74□□□□□ -0.37
Trim40Q3UWA4 Usp33-209ENSMUST00000197748 4183 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
Trim40Q3UWA4 Kdm3a-214ENSMUST00000207023 4753 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
Trim40Q3UWA4 Mtch2-211ENSMUST00000150232 2377 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Trim40Q3UWA4 Gm20554-201ENSMUST00000177421 2352 ntBASIC12.73□□□□□ -0.37
Trim40Q3UWA4 Fer-202ENSMUST00000038080 2365 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Trim40Q3UWA4 Pnck-201ENSMUST00000002087 1536 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Trim40Q3UWA4 Eme2-201ENSMUST00000119848 5226 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Trim40Q3UWA4 Msh6-201ENSMUST00000005503 4254 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Trim40Q3UWA4 Esr1-204ENSMUST00000105590 6339 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Trim40Q3UWA4 Syt2-204ENSMUST00000188842 3386 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Trim40Q3UWA4 Urgcp-204ENSMUST00000120306 3972 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Trim40Q3UWA4 Gm5124-201ENSMUST00000127554 1970 ntTSL 5 BASIC12.73□□□□□ -0.37
Trim40Q3UWA4 Rp2-202ENSMUST00000115387 4498 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Trim40Q3UWA4 Atf7ip2-202ENSMUST00000100191 889 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Trim40Q3UWA4 Fis1-202ENSMUST00000111094 948 ntTSL 2 BASIC12.73□□□□□ -0.37
Trim40Q3UWA4 Triqk-201ENSMUST00000143186 888 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Trim40Q3UWA4 Cby3-202ENSMUST00000164067 731 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
Trim40Q3UWA4 Rpl31-205ENSMUST00000194746 703 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Trim40Q3UWA4 AC159295.1-201ENSMUST00000225326 940 ntBASIC12.73□□□□□ -0.37
Trim40Q3UWA4 AC121598.1-201ENSMUST00000228224 1019 ntBASIC12.73□□□□□ -0.37
Trim40Q3UWA4 Snx14-207ENSMUST00000174806 3082 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
Trim40Q3UWA4 Rasl12-201ENSMUST00000085453 2390 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Trim40Q3UWA4 Ap1s2-201ENSMUST00000033734 1785 ntAPPRIS ALT1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Trim40Q3UWA4 Pcdhgb1-201ENSMUST00000192931 4723 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Trim40Q3UWA4 Syde2-203ENSMUST00000200546 4712 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Trim40Q3UWA4 Pcdhga9-201ENSMUST00000091935 4724 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Trim40Q3UWA4 Ackr2-201ENSMUST00000050327 2853 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Trim40Q3UWA4 Cd80-201ENSMUST00000099816 1701 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Trim40Q3UWA4 Ggnbp1-203ENSMUST00000133257 5012 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
Trim40Q3UWA4 Rcsd1-202ENSMUST00000097474 5001 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Trim40Q3UWA4 2900097C17Rik-202ENSMUST00000192863 4915 ntBASIC12.73□□□□□ -0.37
Trim40Q3UWA4 Begain-204ENSMUST00000209829 3272 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
Trim40Q3UWA4 Gtf2a1l-201ENSMUST00000024970 1621 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Trim40Q3UWA4 Dnm2-206ENSMUST00000172482 2613 ntAPPRIS P4 TSL 5 BASIC12.73□□□□□ -0.37
Trim40Q3UWA4 Gngt2-201ENSMUST00000036088 1587 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Trim40Q3UWA4 Fip1l1-201ENSMUST00000080164 4673 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
Trim40Q3UWA4 Rtn4-203ENSMUST00000102841 4060 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Trim40Q3UWA4 Gm4782-201ENSMUST00000168705 2046 ntBASIC12.72□□□□□ -0.37
Trim40Q3UWA4 Smg7-203ENSMUST00000111836 3928 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trim40Q3UWA4 Prkca-201ENSMUST00000059595 8409 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trim40Q3UWA4 Lgals12-202ENSMUST00000099729 2757 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trim40Q3UWA4 Slc39a8-201ENSMUST00000029810 3203 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trim40Q3UWA4 Abcd1-201ENSMUST00000002084 3648 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trim40Q3UWA4 Vwa3b-202ENSMUST00000067178 1769 ntAPPRIS P5 TSL 2 BASIC12.72□□□□□ -0.37
Trim40Q3UWA4 Fam221a-202ENSMUST00000121903 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trim40Q3UWA4 AC164107.1-201ENSMUST00000227730 2161 ntBASIC12.72□□□□□ -0.37
Trim40Q3UWA4 Gm16251-201ENSMUST00000162649 338 ntTSL 3 BASIC12.72□□□□□ -0.37
Trim40Q3UWA4 Fau-202ENSMUST00000178310 571 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trim40Q3UWA4 Gm27002-201ENSMUST00000182789 620 ntTSL 2 BASIC12.72□□□□□ -0.37
Trim40Q3UWA4 Gm27244-201ENSMUST00000184260 380 ntTSL 5 BASIC12.72□□□□□ -0.37
Trim40Q3UWA4 Gm29741-201ENSMUST00000192667 421 ntBASIC12.72□□□□□ -0.37
Trim40Q3UWA4 Gm17968-201ENSMUST00000194902 784 ntBASIC12.72□□□□□ -0.37
Trim40Q3UWA4 Olfr520-201ENSMUST00000098264 951 ntAPPRIS P1 BASIC12.72□□□□□ -0.37
Trim40Q3UWA4 1700128E19Rik-201ENSMUST00000134409 2439 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Trim40Q3UWA4 Kiss1r-201ENSMUST00000045529 3163 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trim40Q3UWA4 Ilvbl-212ENSMUST00000220430 2350 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Trim40Q3UWA4 Acbd5-213ENSMUST00000227809 1986 ntAPPRIS ALT2 BASIC12.72□□□□□ -0.37
Trim40Q3UWA4 Pou2f2-203ENSMUST00000108415 7095 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trim40Q3UWA4 Ntsr1-202ENSMUST00000170448 2594 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trim40Q3UWA4 Smug1-201ENSMUST00000064067 3281 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
Trim40Q3UWA4 Zfp862-ps-204ENSMUST00000204484 6065 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Trim40Q3UWA4 Plagl1-201ENSMUST00000121325 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Trim40Q3UWA4 Cnot3-201ENSMUST00000038913 2822 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Trim40Q3UWA4 Elk1-201ENSMUST00000009550 3548 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Trim40Q3UWA4 Tmem116-203ENSMUST00000094357 1366 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.37
Trim40Q3UWA4 Spock3-201ENSMUST00000093480 3024 ntAPPRIS P3 TSL 5 BASIC12.71□□□□□ -0.37
Trim40Q3UWA4 Krt36-201ENSMUST00000107416 1671 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.37
Trim40Q3UWA4 Bend7-201ENSMUST00000056914 2302 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
Trim40Q3UWA4 Renbp-209ENSMUST00000155597 1310 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.37
Trim40Q3UWA4 Ptpn7-203ENSMUST00000187985 1990 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.37
Trim40Q3UWA4 Mfsd14b-201ENSMUST00000054730 3251 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.37
Trim40Q3UWA4 Nfatc2-204ENSMUST00000109184 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Trim40Q3UWA4 Gm11535-201ENSMUST00000145517 778 ntTSL 3 BASIC12.71□□□□□ -0.37
Trim40Q3UWA4 Nudt3-209ENSMUST00000176876 465 ntTSL 2 BASIC12.71□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 71.4 ms