Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Fgf2-201ENSMUST00000038885 462 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Upf3aQ3ULJ3 Krtap19-2-201ENSMUST00000076186 605 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
Upf3aQ3ULJ3 Gpr31b-201ENSMUST00000091648 960 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
Upf3aQ3ULJ3 Cacnb1-201ENSMUST00000017552 3396 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Upf3aQ3ULJ3 Aqp6-201ENSMUST00000023754 2060 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Upf3aQ3ULJ3 Umad1-208ENSMUST00000162034 2015 ntAPPRIS ALT2 TSL 3 BASIC14.25□□□□□ -0.13
Upf3aQ3ULJ3 Espn-220ENSMUST00000207676 4618 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Upf3aQ3ULJ3 Crhr2-201ENSMUST00000003568 2695 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Upf3aQ3ULJ3 Col25a1-201ENSMUST00000080335 2624 ntAPPRIS P4 TSL 5 BASIC14.25□□□□□ -0.13
Upf3aQ3ULJ3 Lin54-201ENSMUST00000046154 4451 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Upf3aQ3ULJ3 Cdr2l-201ENSMUST00000053288 3700 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Upf3aQ3ULJ3 Syt17-204ENSMUST00000203796 2957 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Upf3aQ3ULJ3 Tbc1d4-210ENSMUST00000162617 4762 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Upf3aQ3ULJ3 Lats2-210ENSMUST00000174694 3287 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
Upf3aQ3ULJ3 Slc34a3-201ENSMUST00000006638 2183 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Upf3aQ3ULJ3 P4hb-201ENSMUST00000026122 2861 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Upf3aQ3ULJ3 Trim24-203ENSMUST00000120428 3940 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Upf3aQ3ULJ3 Nyap1-204ENSMUST00000212152 2499 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Upf3aQ3ULJ3 Rbfox3-201ENSMUST00000017576 3150 ntAPPRIS P4 TSL 1 (best) BASIC14.24□□□□□ -0.13
Upf3aQ3ULJ3 Gm13111-201ENSMUST00000136217 3542 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Upf3aQ3ULJ3 Slc4a2-201ENSMUST00000080067 4179 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Upf3aQ3ULJ3 Hpse-201ENSMUST00000045617 3117 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Upf3aQ3ULJ3 Ube2j2-204ENSMUST00000105582 1394 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Upf3aQ3ULJ3 Pnoc-202ENSMUST00000224594 1388 ntAPPRIS ALT2 BASIC14.24□□□□□ -0.13
Upf3aQ3ULJ3 Snph-204ENSMUST00000109877 3367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Upf3aQ3ULJ3 Hps5-201ENSMUST00000014562 4953 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Upf3aQ3ULJ3 Rasgef1b-209ENSMUST00000168092 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Upf3aQ3ULJ3 Rasgef1b-201ENSMUST00000031276 2990 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Upf3aQ3ULJ3 Kcnj9-202ENSMUST00000194204 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Upf3aQ3ULJ3 Ifnar2-202ENSMUST00000089042 2580 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Upf3aQ3ULJ3 Nck1-202ENSMUST00000116522 4476 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Upf3aQ3ULJ3 Gm13350-201ENSMUST00000120519 479 ntBASIC14.24□□□□□ -0.13
Upf3aQ3ULJ3 Polr3c-202ENSMUST00000125183 923 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Upf3aQ3ULJ3 Gm20479-201ENSMUST00000126587 556 ntAPPRIS P1 TSL 3 BASIC14.24□□□□□ -0.13
Upf3aQ3ULJ3 Egfl7-211ENSMUST00000152988 723 ntTSL 2 BASIC14.24□□□□□ -0.13
Upf3aQ3ULJ3 Gm15851-201ENSMUST00000160564 662 ntTSL 3 BASIC14.24□□□□□ -0.13
Upf3aQ3ULJ3 Smad7-204ENSMUST00000174411 769 ntTSL 5 BASIC14.24□□□□□ -0.13
Upf3aQ3ULJ3 1700120C14Rik-202ENSMUST00000187967 391 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Upf3aQ3ULJ3 Gm37933-201ENSMUST00000193964 981 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Upf3aQ3ULJ3 Hax1-207ENSMUST00000198782 855 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
Upf3aQ3ULJ3 Hspb2-201ENSMUST00000042790 773 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Upf3aQ3ULJ3 Tas2r137-201ENSMUST00000064932 1073 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
Upf3aQ3ULJ3 Lrrc7-205ENSMUST00000200137 7321 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Upf3aQ3ULJ3 Dzip1-201ENSMUST00000004055 4079 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Upf3aQ3ULJ3 E230013L22Rik-201ENSMUST00000180408 1856 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Upf3aQ3ULJ3 Tpr-203ENSMUST00000124973 7430 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Upf3aQ3ULJ3 Prkacb-202ENSMUST00000102515 4347 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Upf3aQ3ULJ3 7420426K07Rik-201ENSMUST00000098460 1504 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
Upf3aQ3ULJ3 Fam189b-203ENSMUST00000119707 2415 ntTSL 5 BASIC14.24□□□□□ -0.13
Upf3aQ3ULJ3 Pou2f2-209ENSMUST00000175774 7047 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Upf3aQ3ULJ3 Gm45338-207ENSMUST00000211499 1405 ntTSL 5 BASIC14.24□□□□□ -0.13
Upf3aQ3ULJ3 Mctp1-204ENSMUST00000125209 4715 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Upf3aQ3ULJ3 Ino80-201ENSMUST00000049920 6354 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
Upf3aQ3ULJ3 Plekhn1-201ENSMUST00000105569 3014 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Upf3aQ3ULJ3 Stk38-202ENSMUST00000119274 1939 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Upf3aQ3ULJ3 Slc22a15-207ENSMUST00000190824 3010 ntTSL 5 BASIC14.23□□□□□ -0.13
Upf3aQ3ULJ3 Wfdc1-201ENSMUST00000024107 1371 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Upf3aQ3ULJ3 Rtf1-201ENSMUST00000028767 4664 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Upf3aQ3ULJ3 Gtf2h1-201ENSMUST00000006774 2736 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Upf3aQ3ULJ3 Sema5b-202ENSMUST00000120756 4646 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Upf3aQ3ULJ3 Midn-201ENSMUST00000042057 3727 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
Upf3aQ3ULJ3 Smpd3-202ENSMUST00000212896 2626 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Upf3aQ3ULJ3 Zfand3-201ENSMUST00000057897 2617 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Upf3aQ3ULJ3 Alas1-207ENSMUST00000141118 3399 ntAPPRIS P2 TSL 5 BASIC14.23□□□□□ -0.13
Upf3aQ3ULJ3 Lix1l-201ENSMUST00000062058 3312 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Upf3aQ3ULJ3 Sacs-201ENSMUST00000089394 3345 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Upf3aQ3ULJ3 Psme2b-201ENSMUST00000104958 837 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
Upf3aQ3ULJ3 Ndufs5-202ENSMUST00000106206 599 ntAPPRIS P1 TSL 3 BASIC14.23□□□□□ -0.13
Upf3aQ3ULJ3 Birc7-201ENSMUST00000108875 1178 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
Upf3aQ3ULJ3 Rpl3-ps2-201ENSMUST00000117131 1214 ntBASIC14.23□□□□□ -0.13
Upf3aQ3ULJ3 Sumo3-206ENSMUST00000141228 772 ntTSL 3 BASIC14.23□□□□□ -0.13
Upf3aQ3ULJ3 Mmgt2-207ENSMUST00000155759 589 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Upf3aQ3ULJ3 Gm7584-201ENSMUST00000175829 940 ntBASIC14.23□□□□□ -0.13
Upf3aQ3ULJ3 1600014C23Rik-201ENSMUST00000178179 518 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Upf3aQ3ULJ3 Gm20033-203ENSMUST00000180912 796 ntTSL 5 BASIC14.23□□□□□ -0.13
Upf3aQ3ULJ3 Pced1c-ps-201ENSMUST00000187740 751 ntBASIC14.23□□□□□ -0.13
Upf3aQ3ULJ3 Gm5850-201ENSMUST00000192923 1206 ntBASIC14.23□□□□□ -0.13
Upf3aQ3ULJ3 Gm7783-201ENSMUST00000204795 781 ntBASIC14.23□□□□□ -0.13
Upf3aQ3ULJ3 AC131777.1-201ENSMUST00000214749 387 ntTSL 3 BASIC14.23□□□□□ -0.13
Upf3aQ3ULJ3 Gm4935-201ENSMUST00000221316 1198 ntBASIC14.23□□□□□ -0.13
Upf3aQ3ULJ3 AC154462.2-201ENSMUST00000227519 370 ntBASIC14.23□□□□□ -0.13
Upf3aQ3ULJ3 Olfr1346-201ENSMUST00000056144 1051 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
Upf3aQ3ULJ3 Olfr521-201ENSMUST00000098263 967 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
Upf3aQ3ULJ3 Eno1b-201ENSMUST00000076155 1757 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Upf3aQ3ULJ3 Prss8-202ENSMUST00000206124 1709 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Upf3aQ3ULJ3 Zfp566-201ENSMUST00000088785 1709 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Upf3aQ3ULJ3 Dbndd1-203ENSMUST00000177240 1463 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Upf3aQ3ULJ3 Zfp90-203ENSMUST00000212606 2685 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Upf3aQ3ULJ3 Loxl2-201ENSMUST00000022660 5316 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Upf3aQ3ULJ3 Mcc-202ENSMUST00000164666 3606 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Upf3aQ3ULJ3 Il15-201ENSMUST00000034148 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Upf3aQ3ULJ3 Alas1-201ENSMUST00000074082 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Upf3aQ3ULJ3 Btbd10-201ENSMUST00000047091 2581 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Upf3aQ3ULJ3 Prdx2-203ENSMUST00000109734 1612 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
Upf3aQ3ULJ3 Smpd2-201ENSMUST00000019965 1602 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Upf3aQ3ULJ3 Tle3-201ENSMUST00000034820 4646 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Upf3aQ3ULJ3 Csnk1d-201ENSMUST00000018274 3675 ntAPPRIS P4 TSL 1 (best) BASIC14.22□□□□□ -0.13
Upf3aQ3ULJ3 Gabra4-201ENSMUST00000031121 4108 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Upf3aQ3ULJ3 Ltbp4-203ENSMUST00000118583 4726 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Upf3aQ3ULJ3 Dnajc27-202ENSMUST00000049584 2934 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 46.2 ms