Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Rbpms2-202ENSMUST00000169003 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Lire1P11260 Pcdhac1-201ENSMUST00000007584 5419 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Lire1P11260 Gm26882-201ENSMUST00000181611 1537 ntTSL 5 BASIC12.96□□□□□ -0.33
Lire1P11260 Twf2-204ENSMUST00000188650 1508 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Lire1P11260 Irf1-203ENSMUST00000108922 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Lire1P11260 Bace1-201ENSMUST00000034591 6058 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Lire1P11260 4931429P17Rik-201ENSMUST00000061899 2012 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
Lire1P11260 Gm37014-201ENSMUST00000194723 2253 ntBASIC12.96□□□□□ -0.34
Lire1P11260 Pcdhgc3-201ENSMUST00000076807 4687 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Lire1P11260 Rbak-201ENSMUST00000049861 3335 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Lire1P11260 Sfswap-201ENSMUST00000053737 3313 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.34
Lire1P11260 Got2-201ENSMUST00000034097 2530 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Lire1P11260 Wdr13-205ENSMUST00000130832 4374 ntTSL 5 BASIC12.96□□□□□ -0.34
Lire1P11260 Vrtn-201ENSMUST00000095551 3028 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Lire1P11260 5730559C18Rik-201ENSMUST00000120339 2988 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Lire1P11260 Gm20488-201ENSMUST00000201641 2996 ntTSL 2 BASIC12.96□□□□□ -0.34
Lire1P11260 Fip1l1-201ENSMUST00000080164 4673 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
Lire1P11260 Krt74-201ENSMUST00000088018 1648 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
Lire1P11260 Arcn1-201ENSMUST00000034607 4072 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Lire1P11260 Farp2-202ENSMUST00000122402 2816 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Lire1P11260 Zfp516-202ENSMUST00000171238 7725 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
Lire1P11260 Zfp516-201ENSMUST00000071233 7703 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
Lire1P11260 Thnsl2-201ENSMUST00000074241 1821 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
Lire1P11260 Fam222b-201ENSMUST00000073705 3258 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Lire1P11260 Adrb3-201ENSMUST00000081438 2795 ntAPPRIS P2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Lire1P11260 Atat1-203ENSMUST00000077494 1340 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Lire1P11260 Spata21-201ENSMUST00000051907 2526 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Lire1P11260 Thap1-201ENSMUST00000036807 2295 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Lire1P11260 Tmem230-203ENSMUST00000110164 2957 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
Lire1P11260 2310035C23Rik-201ENSMUST00000039173 4328 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
Lire1P11260 E130218I03Rik-203ENSMUST00000125921 666 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
Lire1P11260 E130218I03Rik-206ENSMUST00000135228 544 ntAPPRIS P1 TSL 3 BASIC12.95□□□□□ -0.34
Lire1P11260 E130218I03Rik-207ENSMUST00000143448 591 ntAPPRIS P1 TSL 3 BASIC12.95□□□□□ -0.34
Lire1P11260 Gm20650-201ENSMUST00000175690 198 ntTSL 3 BASIC12.95□□□□□ -0.34
Lire1P11260 2410002F23Rik-214ENSMUST00000186606 748 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
Lire1P11260 Gm7730-201ENSMUST00000212486 454 ntBASIC12.95□□□□□ -0.34
Lire1P11260 Dhx58-201ENSMUST00000017974 2412 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Lire1P11260 Adamts7-208ENSMUST00000167122 5338 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
Lire1P11260 Zfp219-202ENSMUST00000166169 3017 ntAPPRIS P2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Lire1P11260 2810403A07Rik-201ENSMUST00000029696 2981 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Lire1P11260 4930558J18Rik-201ENSMUST00000181949 2052 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Lire1P11260 Glud1-201ENSMUST00000022322 3390 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Lire1P11260 Plxnb2-201ENSMUST00000060808 6394 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
Lire1P11260 Mboat2-201ENSMUST00000078902 2467 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
Lire1P11260 Arf1-201ENSMUST00000061242 1800 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Lire1P11260 Prodh-205ENSMUST00000136776 2041 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
Lire1P11260 Aoc2-202ENSMUST00000107264 2230 ntTSL 5 BASIC12.94□□□□□ -0.34
Lire1P11260 Lrfn2-201ENSMUST00000046254 3202 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Lire1P11260 Ifnar2-202ENSMUST00000089042 2580 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Lire1P11260 Gm9913-201ENSMUST00000066157 2793 ntAPPRIS P1 BASIC12.94□□□□□ -0.34
Lire1P11260 Gm42466-201ENSMUST00000202099 1301 ntBASIC12.94□□□□□ -0.34
Lire1P11260 Nphp4-201ENSMUST00000056567 4583 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Lire1P11260 Nfib-203ENSMUST00000107245 9116 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Lire1P11260 Tnip1-204ENSMUST00000108885 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Lire1P11260 Fn1-211ENSMUST00000187938 7965 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Lire1P11260 Slc27a5-202ENSMUST00000120903 1468 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Lire1P11260 Rnf25-201ENSMUST00000027357 1479 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
Lire1P11260 B9d1-201ENSMUST00000102657 817 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Lire1P11260 Gfpt1-202ENSMUST00000113655 1255 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Lire1P11260 Gm7488-201ENSMUST00000117148 684 ntBASIC12.94□□□□□ -0.34
Lire1P11260 Pou2f3-rs1-201ENSMUST00000120271 1046 ntBASIC12.94□□□□□ -0.34
Lire1P11260 Dancr-202ENSMUST00000120364 575 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Lire1P11260 Gm13383-201ENSMUST00000131190 1171 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Lire1P11260 Gm11682-201ENSMUST00000144689 516 ntTSL 3 BASIC12.94□□□□□ -0.34
Lire1P11260 Ppt2-202ENSMUST00000166040 1139 ntAPPRIS P1 TSL 3 BASIC12.94□□□□□ -0.34
Lire1P11260 Tmem61-202ENSMUST00000177702 561 ntTSL 5 BASIC12.94□□□□□ -0.34
Lire1P11260 Prr29-203ENSMUST00000185986 983 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
Lire1P11260 Gm29541-201ENSMUST00000191351 678 ntBASIC12.94□□□□□ -0.34
Lire1P11260 Gm8597-201ENSMUST00000191525 1109 ntBASIC12.94□□□□□ -0.34
Lire1P11260 Gm37596-201ENSMUST00000193565 1021 ntAPPRIS P1 BASIC12.94□□□□□ -0.34
Lire1P11260 Vkorc1-201ENSMUST00000033074 748 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Lire1P11260 Tmod4-201ENSMUST00000005769 1242 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Lire1P11260 Ifnl2-201ENSMUST00000081684 702 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Lire1P11260 Casc4-202ENSMUST00000089912 3602 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Lire1P11260 E2f3-203ENSMUST00000221536 4597 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Lire1P11260 E2f3-204ENSMUST00000222730 4579 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Lire1P11260 Dusp6-201ENSMUST00000020118 2796 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Lire1P11260 Caprin2-202ENSMUST00000111569 3697 ntAPPRIS P2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Lire1P11260 Ces2e-202ENSMUST00000109410 1999 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Lire1P11260 Tmem63b-201ENSMUST00000113523 3284 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Lire1P11260 Ntng2-204ENSMUST00000102873 1593 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Lire1P11260 4921514A10Rik-201ENSMUST00000181450 2114 ntTSL 5 BASIC12.94□□□□□ -0.34
Lire1P11260 Snx8-205ENSMUST00000196566 1914 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
Lire1P11260 Kif3c-205ENSMUST00000220210 4144 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Lire1P11260 Dab2ip-206ENSMUST00000112987 6287 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
Lire1P11260 Il13ra1-201ENSMUST00000033418 3712 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Lire1P11260 Myh14-203ENSMUST00000107900 6400 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
Lire1P11260 A530013C23Rik-201ENSMUST00000130679 2555 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Lire1P11260 Dido1-207ENSMUST00000130986 4898 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Lire1P11260 Chtf8-202ENSMUST00000175940 2890 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Lire1P11260 Lrfn3-201ENSMUST00000046351 2886 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Lire1P11260 Acsf3-203ENSMUST00000212790 2171 ntAPPRIS P2 TSL 5 BASIC12.93□□□□□ -0.34
Lire1P11260 9130008F23Rik-201ENSMUST00000068258 2159 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Lire1P11260 Dclk1-211ENSMUST00000199169 1499 ntTSL 2 BASIC12.93□□□□□ -0.34
Lire1P11260 Stox2-209ENSMUST00000211882 9696 ntTSL 5 BASIC12.93□□□□□ -0.34
Lire1P11260 Erfe-201ENSMUST00000086861 2815 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Lire1P11260 Aph1a-202ENSMUST00000056710 1601 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Lire1P11260 Irf1-202ENSMUST00000108920 2137 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
Lire1P11260 Ghr-203ENSMUST00000110698 1171 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Lire1P11260 2310061I04Rik-204ENSMUST00000148721 1293 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
Retrieved 100 of 76,532 protein–RNA pairs in 42.1 ms