Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Arhgap42-201ENSMUST00000093893 6116 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Col1a1P11087 Slc52a3-204ENSMUST00000109861 2590 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Col1a1P11087 Slc44a3-201ENSMUST00000039197 2620 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Col1a1P11087 Rtn3-203ENSMUST00000088169 1709 ntTSL 5 BASIC15.71■□□□□ 0.11
Col1a1P11087 Gm37736-201ENSMUST00000193564 2802 ntBASIC15.71■□□□□ 0.11
Col1a1P11087 Dnajb4-204ENSMUST00000144950 2459 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Col1a1P11087 AC101945.2-201ENSMUST00000227886 1377 ntBASIC15.71■□□□□ 0.11
Col1a1P11087 Phka2-202ENSMUST00000112376 2310 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Col1a1P11087 Tor1aip1-201ENSMUST00000027738 1952 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
Col1a1P11087 Vopp1-202ENSMUST00000127485 2908 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Col1a1P11087 Pced1b-201ENSMUST00000059433 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Col1a1P11087 Grm7-201ENSMUST00000071076 3127 ntAPPRIS ALT1 TSL 5 BASIC15.71■□□□□ 0.11
Col1a1P11087 9330182L06Rik-202ENSMUST00000115348 3403 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.1
Col1a1P11087 Gm13665-201ENSMUST00000120830 528 ntBASIC15.71■□□□□ 0.1
Col1a1P11087 Nat8f1-201ENSMUST00000161198 1021 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
Col1a1P11087 Mir6979-201ENSMUST00000183927 56 ntBASIC15.71■□□□□ 0.1
Col1a1P11087 Gm28379-201ENSMUST00000186450 554 ntTSL 5 BASIC15.71■□□□□ 0.1
Col1a1P11087 Gm19605-201ENSMUST00000220603 686 ntTSL 3 BASIC15.71■□□□□ 0.1
Col1a1P11087 Exosc5-206ENSMUST00000206561 1680 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
Col1a1P11087 Pxn-214ENSMUST00000212819 1689 ntTSL 5 BASIC15.71■□□□□ 0.1
Col1a1P11087 Cspg5-201ENSMUST00000035058 3870 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.1
Col1a1P11087 Reep1-201ENSMUST00000121469 3924 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col1a1P11087 Trim45-203ENSMUST00000106980 3337 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col1a1P11087 Yipf1-201ENSMUST00000075693 1321 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col1a1P11087 Itgb4-205ENSMUST00000106461 6208 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
Col1a1P11087 Gm43205-201ENSMUST00000198622 1968 ntBASIC15.7■□□□□ 0.1
Col1a1P11087 Psap-202ENSMUST00000105465 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col1a1P11087 Rufy3-205ENSMUST00000198965 3536 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col1a1P11087 Kcnq2-207ENSMUST00000103050 2713 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
Col1a1P11087 Cd74-202ENSMUST00000097563 1410 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col1a1P11087 Snx22-201ENSMUST00000044711 2543 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col1a1P11087 Tbc1d10b-201ENSMUST00000120705 3614 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col1a1P11087 Ica1l-201ENSMUST00000027172 3650 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col1a1P11087 Celf1-201ENSMUST00000005643 4830 ntAPPRIS P4 TSL 5 BASIC15.7■□□□□ 0.1
Col1a1P11087 Dnm1-205ENSMUST00000113365 3257 ntAPPRIS ALT1 TSL 5 BASIC15.7■□□□□ 0.1
Col1a1P11087 Mpped1-201ENSMUST00000046168 3265 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col1a1P11087 Acot7-202ENSMUST00000075363 1457 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col1a1P11087 Rxrg-204ENSMUST00000111386 1705 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
Col1a1P11087 2210406O10Rik-202ENSMUST00000122882 1743 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Col1a1P11087 Atp5d-202ENSMUST00000105366 781 ntTSL 2 BASIC15.7■□□□□ 0.1
Col1a1P11087 Ndufa3-202ENSMUST00000108644 351 ntTSL 3 BASIC15.7■□□□□ 0.1
Col1a1P11087 Mrpl55-203ENSMUST00000108785 792 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col1a1P11087 Smyd3-202ENSMUST00000111134 1229 ntTSL 2 BASIC15.7■□□□□ 0.1
Col1a1P11087 Stpg3-202ENSMUST00000114363 1234 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col1a1P11087 Gm14028-201ENSMUST00000117434 479 ntBASIC15.7■□□□□ 0.1
Col1a1P11087 Rpl13-ps1-201ENSMUST00000121801 668 ntBASIC15.7■□□□□ 0.1
Col1a1P11087 Gm15276-201ENSMUST00000145953 498 ntBASIC15.7■□□□□ 0.1
Col1a1P11087 Rims3-204ENSMUST00000171363 977 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col1a1P11087 Gm17586-201ENSMUST00000181502 908 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Col1a1P11087 Gm26956-201ENSMUST00000182176 986 ntBASIC15.7■□□□□ 0.1
Col1a1P11087 Gm8176-201ENSMUST00000191297 1099 ntBASIC15.7■□□□□ 0.1
Col1a1P11087 Tmem50a-201ENSMUST00000030626 1204 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col1a1P11087 Cryga-201ENSMUST00000061497 625 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col1a1P11087 Foxa1-201ENSMUST00000044380 3191 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col1a1P11087 Csdc2-201ENSMUST00000038757 2490 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col1a1P11087 Fnbp1-208ENSMUST00000113560 4726 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col1a1P11087 AC139054.1-201ENSMUST00000226898 1598 ntBASIC15.7■□□□□ 0.1
Col1a1P11087 Cadps2-204ENSMUST00000115356 3533 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Col1a1P11087 Psma3-202ENSMUST00000160027 2846 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col1a1P11087 Gm16168-201ENSMUST00000161091 1359 ntTSL 3 BASIC15.69■□□□□ 0.1
Col1a1P11087 Abhd1-202ENSMUST00000201125 1352 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Col1a1P11087 Lrig2-207ENSMUST00000199070 5991 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Col1a1P11087 Srpx-201ENSMUST00000044789 2477 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col1a1P11087 P2ry2-201ENSMUST00000037540 3011 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col1a1P11087 Rbm26-201ENSMUST00000022715 3633 ntTSL 5 BASIC15.69■□□□□ 0.1
Col1a1P11087 Pkp3-201ENSMUST00000066873 2848 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col1a1P11087 Lmntd2-202ENSMUST00000170841 2077 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col1a1P11087 Prr15l-203ENSMUST00000107633 930 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
Col1a1P11087 Gm7857-201ENSMUST00000117957 358 ntBASIC15.69■□□□□ 0.1
Col1a1P11087 Gm14130-201ENSMUST00000118417 987 ntBASIC15.69■□□□□ 0.1
Col1a1P11087 Gm14809-201ENSMUST00000152025 695 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Col1a1P11087 Gm20457-201ENSMUST00000173374 682 ntTSL 3 BASIC15.69■□□□□ 0.1
Col1a1P11087 Tmem14a-202ENSMUST00000027065 1168 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col1a1P11087 Tspan8-201ENSMUST00000035563 1244 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col1a1P11087 Vmn1r213-201ENSMUST00000076897 1155 ntAPPRIS P2 BASIC15.69■□□□□ 0.1
Col1a1P11087 Ncdn-202ENSMUST00000106116 2434 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col1a1P11087 Igf1-204ENSMUST00000121161 1344 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Col1a1P11087 Ecm1-202ENSMUST00000117507 1900 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col1a1P11087 Ttyh2-201ENSMUST00000045779 3486 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col1a1P11087 Entpd5-204ENSMUST00000117286 1691 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col1a1P11087 Slit1-203ENSMUST00000169141 5673 ntTSL 5 BASIC15.69■□□□□ 0.1
Col1a1P11087 Olfr1156-203ENSMUST00000216726 3271 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
Col1a1P11087 Olfm1-202ENSMUST00000100244 2686 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Col1a1P11087 Prex1-201ENSMUST00000036719 6533 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col1a1P11087 Tspan12-202ENSMUST00000120965 2157 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Col1a1P11087 Eps8l1-201ENSMUST00000086372 2522 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col1a1P11087 Gm5934-201ENSMUST00000120734 2588 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
Col1a1P11087 Nrxn1-206ENSMUST00000160800 5683 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Col1a1P11087 Fosl2-201ENSMUST00000031017 6537 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col1a1P11087 Foxi2-201ENSMUST00000060356 2657 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col1a1P11087 Cenpl-202ENSMUST00000111618 1996 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
Col1a1P11087 4930522L14Rik-201ENSMUST00000100937 599 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Col1a1P11087 Gm25214-201ENSMUST00000104573 129 ntBASIC15.68■□□□□ 0.1
Col1a1P11087 Mogat1-202ENSMUST00000113524 1228 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
Col1a1P11087 AA914427-201ENSMUST00000193194 1166 ntBASIC15.68■□□□□ 0.1
Col1a1P11087 Tmem176b-206ENSMUST00000203355 1202 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
Col1a1P11087 Abhd11os-203ENSMUST00000222613 363 ntBASIC15.68■□□□□ 0.1
Col1a1P11087 Itln1-201ENSMUST00000043094 1141 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col1a1P11087 Prickle3-203ENSMUST00000129662 2376 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
Col1a1P11087 Zfp879-201ENSMUST00000049625 2408 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 31.7 ms