Protein–RNA interactions for Protein: O89079

Cope, Coatomer subunit epsilon, mousemouse

Predictions only

Length 308 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CopeO89079 Irak1-204ENSMUST00000114352 3825 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
CopeO89079 Atg16l1-203ENSMUST00000113190 3102 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
CopeO89079 Matr3-206ENSMUST00000187389 3107 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
CopeO89079 Mkrn1-201ENSMUST00000031985 3046 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
CopeO89079 Stau1-204ENSMUST00000109238 2976 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
CopeO89079 Golim4-208ENSMUST00000167078 2902 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
CopeO89079 Ccdc125-201ENSMUST00000057325 2413 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
CopeO89079 Myc-205ENSMUST00000161976 2338 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
CopeO89079 Myc-201ENSMUST00000022971 2338 ntAPPRIS ALT1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CopeO89079 Wwox-201ENSMUST00000004756 2244 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CopeO89079 Bmp4-201ENSMUST00000074077 2064 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CopeO89079 Hadhb-202ENSMUST00000114783 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CopeO89079 Gm4782-201ENSMUST00000168705 2046 ntBASIC14.02□□□□□ -0.16
CopeO89079 Htr3a-202ENSMUST00000217289 1987 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
CopeO89079 Fhl4-202ENSMUST00000216889 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CopeO89079 Ap1s2-201ENSMUST00000033734 1785 ntAPPRIS ALT1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CopeO89079 Epha5-204ENSMUST00000113401 5158 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
CopeO89079 Acrbp-205ENSMUST00000112414 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
CopeO89079 Gm13332-201ENSMUST00000120451 1398 ntBASIC14.02□□□□□ -0.17
CopeO89079 Ubap1l-201ENSMUST00000147185 1380 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
CopeO89079 Gm34016-201ENSMUST00000222678 1384 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CopeO89079 Lcmt1-201ENSMUST00000033025 1369 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
CopeO89079 Gm25287-201ENSMUST00000103846 110 ntBASIC14.02□□□□□ -0.17
CopeO89079 Gm22918-201ENSMUST00000103855 110 ntBASIC14.02□□□□□ -0.17
CopeO89079 Gm4913-201ENSMUST00000117075 1290 ntBASIC14.02□□□□□ -0.17
CopeO89079 Gm15917-201ENSMUST00000162771 487 ntTSL 2 BASIC14.02□□□□□ -0.17
CopeO89079 Mpped1-210ENSMUST00000172115 795 ntTSL 3 BASIC14.02□□□□□ -0.17
CopeO89079 Mpped1-211ENSMUST00000172398 795 ntTSL 3 BASIC14.02□□□□□ -0.17
CopeO89079 Gm18766-201ENSMUST00000189811 808 ntBASIC14.02□□□□□ -0.17
CopeO89079 Gm4971-201ENSMUST00000205991 1108 ntBASIC14.02□□□□□ -0.17
CopeO89079 Gm18206-201ENSMUST00000207027 926 ntBASIC14.02□□□□□ -0.17
CopeO89079 Atf5-203ENSMUST00000209072 595 ntTSL 5 BASIC14.02□□□□□ -0.17
CopeO89079 Gm18934-201ENSMUST00000216671 1044 ntBASIC14.02□□□□□ -0.17
CopeO89079 Dupd1-202ENSMUST00000224735 548 ntBASIC14.02□□□□□ -0.17
CopeO89079 Yif1b-201ENSMUST00000032809 1111 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
CopeO89079 1700120B22Rik-201ENSMUST00000054837 464 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CopeO89079 Gtpbp10-201ENSMUST00000088842 941 ntTSL 5 BASIC14.02□□□□□ -0.17
CopeO89079 Tmem41b-201ENSMUST00000094097 3840 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CopeO89079 Polrmt-202ENSMUST00000159016 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
CopeO89079 Per2-201ENSMUST00000069620 5833 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CopeO89079 Fbln1-201ENSMUST00000057410 3659 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
CopeO89079 Llgl2-212ENSMUST00000177736 3612 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.17
CopeO89079 Ap2a1-201ENSMUST00000085399 3442 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
CopeO89079 Gm10433-202ENSMUST00000146364 1984 ntTSL 2 BASIC14.02□□□□□ -0.17
CopeO89079 Prpf38b-201ENSMUST00000029480 3026 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CopeO89079 Dnmt3b-208ENSMUST00000109772 4015 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
CopeO89079 Gm5939-201ENSMUST00000119613 2874 ntBASIC14.01□□□□□ -0.17
CopeO89079 Fgfr3-215ENSMUST00000202138 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
CopeO89079 Ell3-202ENSMUST00000116432 1674 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CopeO89079 Sqle-201ENSMUST00000022977 2758 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CopeO89079 Stxbp1-202ENSMUST00000077458 3616 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CopeO89079 Cbs-203ENSMUST00000118504 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
CopeO89079 Sp2-201ENSMUST00000062652 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
CopeO89079 Nfatc4-201ENSMUST00000024179 3267 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
CopeO89079 Mcm8-201ENSMUST00000028831 3179 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
CopeO89079 Ubap2l-202ENSMUST00000064639 4073 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CopeO89079 Hoxaas3-202ENSMUST00000136806 2207 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CopeO89079 Pold3-201ENSMUST00000032969 3069 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CopeO89079 Ercc5-201ENSMUST00000027214 3907 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CopeO89079 Asphd1-202ENSMUST00000106339 518 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
CopeO89079 H2af-ps-201ENSMUST00000119066 295 ntBASIC14.01□□□□□ -0.17
CopeO89079 Cdkn1a-203ENSMUST00000122348 857 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CopeO89079 Mir1895-201ENSMUST00000122615 79 ntBASIC14.01□□□□□ -0.17
CopeO89079 Gm14617-202ENSMUST00000144208 607 ntTSL 3 BASIC14.01□□□□□ -0.17
CopeO89079 Mymx-202ENSMUST00000169137 616 ntAPPRIS P4 TSL 2 BASIC14.01□□□□□ -0.17
CopeO89079 Znrf1-213ENSMUST00000174333 515 ntTSL 3 BASIC14.01□□□□□ -0.17
CopeO89079 Thap4-205ENSMUST00000189728 713 ntTSL 2 BASIC14.01□□□□□ -0.17
CopeO89079 AI463170-204ENSMUST00000220157 447 ntTSL 3 BASIC14.01□□□□□ -0.17
CopeO89079 AC090659.2-201ENSMUST00000225378 1186 ntBASIC14.01□□□□□ -0.17
CopeO89079 Trem2-201ENSMUST00000024791 1088 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
CopeO89079 Ap4b1-203ENSMUST00000106823 2741 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CopeO89079 Dnmt3a-201ENSMUST00000020991 9685 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
CopeO89079 Lrrc29-201ENSMUST00000070508 1922 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CopeO89079 Zer1-202ENSMUST00000113677 4189 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CopeO89079 Creb3-201ENSMUST00000102944 1884 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
CopeO89079 Pcbp3-203ENSMUST00000105411 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
CopeO89079 Cadm2-202ENSMUST00000120594 3248 ntAPPRIS ALT1 TSL 5 BASIC14.01□□□□□ -0.17
CopeO89079 Snph-202ENSMUST00000094456 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
CopeO89079 Vps4b-201ENSMUST00000094646 4633 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CopeO89079 Usp19-204ENSMUST00000178075 4512 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
CopeO89079 Usp19-202ENSMUST00000085044 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
CopeO89079 Pax6-202ENSMUST00000090397 3069 ntAPPRIS ALT1 TSL 5 BASIC14.01□□□□□ -0.17
CopeO89079 Rcsd1-202ENSMUST00000097474 5001 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
CopeO89079 Kbtbd6-201ENSMUST00000100359 2982 ntAPPRIS ALT2 BASIC14.01□□□□□ -0.17
CopeO89079 Kbtbd6-202ENSMUST00000226192 2984 ntAPPRIS P2 BASIC14.01□□□□□ -0.17
CopeO89079 Armcx1-203ENSMUST00000113197 2179 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CopeO89079 Evi5l-202ENSMUST00000176072 3932 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
CopeO89079 Nectin4-202ENSMUST00000094325 3245 ntTSL 1 (best) BASIC14□□□□□ -0.17
CopeO89079 Iffo2-202ENSMUST00000123827 2036 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
CopeO89079 Asap1-217ENSMUST00000177371 6164 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
CopeO89079 Tyw1-203ENSMUST00000100662 1867 ntTSL 1 (best) BASIC14□□□□□ -0.17
CopeO89079 Tmem199-201ENSMUST00000052566 1347 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CopeO89079 Zdhhc19-201ENSMUST00000064192 1323 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CopeO89079 Pcdhb18-201ENSMUST00000055949 5041 ntAPPRIS P1 BASIC14□□□□□ -0.17
CopeO89079 Gria4-203ENSMUST00000163309 2338 ntTSL 1 (best) BASIC14□□□□□ -0.17
CopeO89079 Ube3a-216ENSMUST00000202945 3889 ntTSL 1 (best) BASIC14□□□□□ -0.17
CopeO89079 Slc13a5-201ENSMUST00000021161 3329 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
CopeO89079 Gm11779-201ENSMUST00000118541 368 ntBASIC14□□□□□ -0.17
CopeO89079 Mpv17-203ENSMUST00000200833 1171 ntTSL 5 BASIC14□□□□□ -0.17
CopeO89079 Gm42802-201ENSMUST00000202475 456 ntTSL 2 BASIC14□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 47.2 ms