Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Myt1l-204ENSMUST00000218198 2735 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Lmx1bO88609 Atp13a2-203ENSMUST00000127833 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Lmx1bO88609 Ttc7-201ENSMUST00000041110 4614 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Lmx1bO88609 Dnajb5-204ENSMUST00000107973 2300 ntAPPRIS P2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Lmx1bO88609 Cadps2-209ENSMUST00000142913 4533 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.44
Lmx1bO88609 Rwdd4a-201ENSMUST00000033973 2921 ntAPPRIS P1 TSL 2 BASIC12.33□□□□□ -0.44
Lmx1bO88609 Dnm1-201ENSMUST00000078352 3246 ntAPPRIS P2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Lmx1bO88609 Slc12a4-201ENSMUST00000034370 3811 ntAPPRIS ALT1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Lmx1bO88609 Snrpa-202ENSMUST00000122202 1336 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Lmx1bO88609 Slc35g3-201ENSMUST00000102586 1618 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Lmx1bO88609 Dnase1l1-201ENSMUST00000019232 1625 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Lmx1bO88609 Il15-201ENSMUST00000034148 1908 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Lmx1bO88609 Cpt2-201ENSMUST00000030345 2372 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Lmx1bO88609 Gars-201ENSMUST00000003572 2380 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Lmx1bO88609 Clec16a-211ENSMUST00000155633 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Lmx1bO88609 Miat-205ENSMUST00000182953 9163 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Lmx1bO88609 Sun1-202ENSMUST00000078690 2608 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
Lmx1bO88609 Tmem55a-201ENSMUST00000029875 2339 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Lmx1bO88609 Gm16685-201ENSMUST00000181286 1592 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Lmx1bO88609 Eci2-211ENSMUST00000171229 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Lmx1bO88609 2600006K01Rik-201ENSMUST00000047607 1406 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Lmx1bO88609 Shf-202ENSMUST00000110530 910 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
Lmx1bO88609 Crybb2-202ENSMUST00000112336 906 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Lmx1bO88609 1700047K16Rik-201ENSMUST00000145068 886 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Lmx1bO88609 Gm29481-201ENSMUST00000189080 1049 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Lmx1bO88609 Gm37667-201ENSMUST00000193103 752 ntTSL 5 BASIC12.32□□□□□ -0.44
Lmx1bO88609 4930502C17Rik-201ENSMUST00000200282 948 ntBASIC12.32□□□□□ -0.44
Lmx1bO88609 Pomc-202ENSMUST00000218089 977 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Lmx1bO88609 AC192088.1-201ENSMUST00000227561 301 ntBASIC12.32□□□□□ -0.44
Lmx1bO88609 Dctn6-201ENSMUST00000033913 1249 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Lmx1bO88609 Atat1-201ENSMUST00000056034 1930 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
Lmx1bO88609 Rubcn-204ENSMUST00000119810 3371 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
Lmx1bO88609 Gtpbp1-201ENSMUST00000046463 3398 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Lmx1bO88609 Specc1-202ENSMUST00000092415 6797 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
Lmx1bO88609 Nup98-206ENSMUST00000211235 3748 ntTSL 5 BASIC12.32□□□□□ -0.44
Lmx1bO88609 Tcf4-258ENSMUST00000202937 2103 ntTSL 5 BASIC12.32□□□□□ -0.44
Lmx1bO88609 Mbtd1-201ENSMUST00000063645 2138 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Lmx1bO88609 Rnpc3-202ENSMUST00000106535 2616 ntAPPRIS ALT1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Lmx1bO88609 Prkx-202ENSMUST00000114044 2639 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Lmx1bO88609 Dnmt3b-203ENSMUST00000081628 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Lmx1bO88609 Gm28729-201ENSMUST00000190704 1964 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
Lmx1bO88609 Map2k7-206ENSMUST00000110998 3497 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Lmx1bO88609 Ociad1-202ENSMUST00000071081 1311 ntTSL 3 BASIC12.32□□□□□ -0.44
Lmx1bO88609 AI480526-202ENSMUST00000159637 1697 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Lmx1bO88609 Grm5-204ENSMUST00000155358 4500 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Lmx1bO88609 Skida1-202ENSMUST00000091420 4376 ntAPPRIS P2 TSL 5 BASIC12.32□□□□□ -0.44
Lmx1bO88609 Tsn-201ENSMUST00000027623 7063 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Lmx1bO88609 Spock2-201ENSMUST00000121820 5238 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Lmx1bO88609 Pfkfb3-203ENSMUST00000100411 2008 ntTSL 5 BASIC12.32□□□□□ -0.44
Lmx1bO88609 AW209491-202ENSMUST00000178289 2035 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Lmx1bO88609 Smc6-208ENSMUST00000218866 3373 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Lmx1bO88609 Galnt6-203ENSMUST00000161514 2746 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Lmx1bO88609 Mmp2-201ENSMUST00000034187 3078 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Lmx1bO88609 Adgrb2-202ENSMUST00000097868 4635 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
Lmx1bO88609 Papd5-201ENSMUST00000066748 4489 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Lmx1bO88609 Alkbh4-202ENSMUST00000100568 1714 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
Lmx1bO88609 Coro6-205ENSMUST00000108391 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Lmx1bO88609 Tmem30a-201ENSMUST00000034878 3658 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Lmx1bO88609 Il11-201ENSMUST00000094892 1949 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Lmx1bO88609 Trim15-203ENSMUST00000174195 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Lmx1bO88609 Gm5912-201ENSMUST00000122282 1438 ntBASIC12.31□□□□□ -0.44
Lmx1bO88609 Fhl2-202ENSMUST00000185893 1421 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Lmx1bO88609 Apbb1-213ENSMUST00000189265 1429 ntTSL 5 BASIC12.31□□□□□ -0.44
Lmx1bO88609 Lancl1-202ENSMUST00000113979 4461 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Lmx1bO88609 Opa1-201ENSMUST00000038867 3230 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Lmx1bO88609 Colgalt1-201ENSMUST00000047903 3207 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Lmx1bO88609 Rxrg-202ENSMUST00000111380 1630 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Lmx1bO88609 Osbpl10-204ENSMUST00000182384 2158 ntTSL 5 BASIC12.31□□□□□ -0.44
Lmx1bO88609 Serpinh1-205ENSMUST00000208119 2173 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Lmx1bO88609 Tmed5-202ENSMUST00000061203 2194 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Lmx1bO88609 Adamts8-201ENSMUST00000068135 3631 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Lmx1bO88609 Slco3a1-202ENSMUST00000098371 2709 ntAPPRIS ALT1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Lmx1bO88609 Kctd20-203ENSMUST00000118762 3839 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Lmx1bO88609 Gm13829-201ENSMUST00000119600 138 ntBASIC12.31□□□□□ -0.44
Lmx1bO88609 Dusp13-203ENSMUST00000120956 1070 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Lmx1bO88609 Gm17150-201ENSMUST00000165577 381 ntBASIC12.31□□□□□ -0.44
Lmx1bO88609 Prss55-203ENSMUST00000171503 1074 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Lmx1bO88609 Otx2os1-202ENSMUST00000183803 743 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Lmx1bO88609 Gm6266-201ENSMUST00000203844 806 ntBASIC12.31□□□□□ -0.44
Lmx1bO88609 Gm5356-201ENSMUST00000093326 615 ntBASIC12.31□□□□□ -0.44
Lmx1bO88609 Car6-202ENSMUST00000105683 1460 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Lmx1bO88609 Knop1-203ENSMUST00000106549 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Lmx1bO88609 Atp9b-213ENSMUST00000225980 5150 ntAPPRIS P2 BASIC12.31□□□□□ -0.44
Lmx1bO88609 Sf3a2-203ENSMUST00000148665 2213 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Lmx1bO88609 Zc3hc1-210ENSMUST00000152391 1673 ntTSL 5 BASIC12.31□□□□□ -0.44
Lmx1bO88609 1810008I18Rik-201ENSMUST00000185464 2419 ntBASIC12.31□□□□□ -0.44
Lmx1bO88609 Sema3b-205ENSMUST00000102532 3191 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Lmx1bO88609 Hnrnpul1-201ENSMUST00000043765 3354 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Lmx1bO88609 E430024P14Rik-203ENSMUST00000160545 2833 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Lmx1bO88609 4933430H06Rik-201ENSMUST00000200924 1343 ntBASIC12.31□□□□□ -0.44
Lmx1bO88609 Cpne4-201ENSMUST00000057742 3959 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Lmx1bO88609 Nfyc-201ENSMUST00000043429 1932 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Lmx1bO88609 Slc39a2-201ENSMUST00000047726 2334 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Lmx1bO88609 Heg1-205ENSMUST00000152782 8161 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
Lmx1bO88609 Wdr36-202ENSMUST00000166214 2942 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Lmx1bO88609 Eml3-201ENSMUST00000096241 3322 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Lmx1bO88609 Emilin2-201ENSMUST00000024849 3910 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Lmx1bO88609 Taf2-201ENSMUST00000041733 5031 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Lmx1bO88609 Scube1-205ENSMUST00000171496 7824 ntAPPRIS P3 TSL 5 BASIC12.3□□□□□ -0.44
Lmx1bO88609 Xpot-201ENSMUST00000039810 5992 ntTSL 5 BASIC12.3□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 70 ms