Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Pebp1-202ENSMUST00000111973 779 ntTSL 3 BASIC12.84□□□□□ -0.35
Trim3Q9R1R2 Lamtor2-202ENSMUST00000119002 568 ntTSL 2 BASIC12.84□□□□□ -0.35
Trim3Q9R1R2 Ndufv3-205ENSMUST00000191598 642 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Trim3Q9R1R2 Ighv1-25-201ENSMUST00000195638 345 ntBASIC12.84□□□□□ -0.35
Trim3Q9R1R2 Gm31816-201ENSMUST00000209388 1294 ntTSL 5 BASIC12.84□□□□□ -0.35
Trim3Q9R1R2 Bpnt1-205ENSMUST00000210277 1226 ntTSL 5 BASIC12.84□□□□□ -0.35
Trim3Q9R1R2 Gm26953-206ENSMUST00000212840 619 ntTSL 5 BASIC12.84□□□□□ -0.35
Trim3Q9R1R2 Cela1-201ENSMUST00000023775 1103 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trim3Q9R1R2 Gstm1-201ENSMUST00000004140 1289 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trim3Q9R1R2 Sipa1-202ENSMUST00000080824 3837 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trim3Q9R1R2 Dnmt3b-206ENSMUST00000103151 3956 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trim3Q9R1R2 Abcg4-208ENSMUST00000161354 3999 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trim3Q9R1R2 Abcg8-202ENSMUST00000170725 2415 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Trim3Q9R1R2 Nrg1-210ENSMUST00000208488 2403 ntAPPRIS P5 TSL 5 BASIC12.84□□□□□ -0.35
Trim3Q9R1R2 Gm15889-202ENSMUST00000212669 2443 ntBASIC12.84□□□□□ -0.35
Trim3Q9R1R2 Tmed5-202ENSMUST00000061203 2194 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Trim3Q9R1R2 Trim52-201ENSMUST00000022708 3075 ntAPPRIS P1 BASIC12.84□□□□□ -0.35
Trim3Q9R1R2 Rubcn-204ENSMUST00000119810 3371 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
Trim3Q9R1R2 Tdg-208ENSMUST00000151390 3502 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trim3Q9R1R2 Syt7-204ENSMUST00000223586 1344 ntBASIC12.84□□□□□ -0.35
Trim3Q9R1R2 Gm26788-201ENSMUST00000181692 1750 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Trim3Q9R1R2 Dysf-201ENSMUST00000081904 6660 ntAPPRIS P4 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trim3Q9R1R2 Cnnm2-202ENSMUST00000099373 3558 ntAPPRIS P4 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trim3Q9R1R2 Nup98-206ENSMUST00000211235 3748 ntTSL 5 BASIC12.84□□□□□ -0.35
Trim3Q9R1R2 Fuca2-203ENSMUST00000121465 5741 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
Trim3Q9R1R2 Kif5a-201ENSMUST00000099172 6295 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trim3Q9R1R2 Unc5b-203ENSMUST00000218637 3653 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Trim3Q9R1R2 Clstn2-202ENSMUST00000162295 4174 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
Trim3Q9R1R2 Gpd2-207ENSMUST00000169687 5745 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trim3Q9R1R2 Fgfr1-202ENSMUST00000117179 4046 ntAPPRIS ALT1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trim3Q9R1R2 1600002D24Rik-202ENSMUST00000136744 1854 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Trim3Q9R1R2 Ldha-202ENSMUST00000048209 1588 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trim3Q9R1R2 Steap2-203ENSMUST00000115425 4550 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trim3Q9R1R2 Camk4-201ENSMUST00000042868 12331 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trim3Q9R1R2 Elmo3-202ENSMUST00000212033 2351 ntTSL 5 BASIC12.83□□□□□ -0.36
Trim3Q9R1R2 Vangl1-201ENSMUST00000029453 6531 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trim3Q9R1R2 B9d1-201ENSMUST00000102657 817 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trim3Q9R1R2 Rgs19-203ENSMUST00000108771 1110 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Trim3Q9R1R2 Rgs19-205ENSMUST00000108776 1216 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trim3Q9R1R2 Hoxa7-203ENSMUST00000140316 643 ntTSL 3 BASIC12.83□□□□□ -0.36
Trim3Q9R1R2 2210408F21Rik-214ENSMUST00000155345 1022 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Trim3Q9R1R2 Naxd-205ENSMUST00000178721 1108 ntTSL 5 BASIC12.83□□□□□ -0.36
Trim3Q9R1R2 Gm29585-201ENSMUST00000185270 514 ntTSL 5 BASIC12.83□□□□□ -0.36
Trim3Q9R1R2 C330022C24Rik-201ENSMUST00000190581 1077 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Trim3Q9R1R2 Gm33320-201ENSMUST00000192232 530 ntBASIC12.83□□□□□ -0.36
Trim3Q9R1R2 Ighv8-14-201ENSMUST00000196781 358 ntBASIC12.83□□□□□ -0.36
Trim3Q9R1R2 Dctn6-201ENSMUST00000033913 1249 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trim3Q9R1R2 Selenow-201ENSMUST00000044355 736 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trim3Q9R1R2 2900055J20Rik-201ENSMUST00000096572 723 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
Trim3Q9R1R2 Poli-205ENSMUST00000161542 2736 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Trim3Q9R1R2 Glmn-202ENSMUST00000082121 1945 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trim3Q9R1R2 Ate1-202ENSMUST00000035458 4685 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trim3Q9R1R2 Adk-201ENSMUST00000045376 1782 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trim3Q9R1R2 Hcrtr1-202ENSMUST00000119423 2439 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
Trim3Q9R1R2 Samd11-202ENSMUST00000217934 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trim3Q9R1R2 Il1rapl2-202ENSMUST00000113063 3437 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trim3Q9R1R2 Galns-203ENSMUST00000212319 2111 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Trim3Q9R1R2 Nfatc4-201ENSMUST00000024179 3267 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trim3Q9R1R2 Sept1-202ENSMUST00000106314 1486 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trim3Q9R1R2 Ythdf2-203ENSMUST00000152796 4129 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trim3Q9R1R2 Bhmt2-201ENSMUST00000015941 2467 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trim3Q9R1R2 Mospd3-202ENSMUST00000111007 1318 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trim3Q9R1R2 Mypn-202ENSMUST00000218978 1833 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Trim3Q9R1R2 Inpp5a-202ENSMUST00000097975 2301 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Trim3Q9R1R2 Plcd1-203ENSMUST00000214470 2706 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Trim3Q9R1R2 Aldh3b1-201ENSMUST00000051803 1875 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trim3Q9R1R2 Ccnh-204ENSMUST00000164127 1718 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Trim3Q9R1R2 Sesn3-207ENSMUST00000209187 1700 ntTSL 5 BASIC12.82□□□□□ -0.36
Trim3Q9R1R2 Nup205-204ENSMUST00000201374 6411 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trim3Q9R1R2 Nek1-201ENSMUST00000034065 5401 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trim3Q9R1R2 E430024P14Rik-203ENSMUST00000160545 2833 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Trim3Q9R1R2 Gm42878-202ENSMUST00000200170 4783 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
Trim3Q9R1R2 Cggbp1-201ENSMUST00000067744 4425 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trim3Q9R1R2 Nfkb1-206ENSMUST00000164430 3007 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trim3Q9R1R2 Fbxo44-205ENSMUST00000151127 1403 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Trim3Q9R1R2 Gm28729-201ENSMUST00000190704 1964 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
Trim3Q9R1R2 Myh3-201ENSMUST00000007301 5992 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
Trim3Q9R1R2 Xrra1-201ENSMUST00000036155 2731 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trim3Q9R1R2 Crybb2-202ENSMUST00000112336 906 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trim3Q9R1R2 Gm11724-201ENSMUST00000125577 472 ntTSL 2 BASIC12.82□□□□□ -0.36
Trim3Q9R1R2 Gm24694-201ENSMUST00000180054 110 ntBASIC12.82□□□□□ -0.36
Trim3Q9R1R2 Gm27663-201ENSMUST00000184839 110 ntBASIC12.82□□□□□ -0.36
Trim3Q9R1R2 Gm28942-201ENSMUST00000186334 365 ntTSL 3 BASIC12.82□□□□□ -0.36
Trim3Q9R1R2 Gm7063-201ENSMUST00000186840 981 ntBASIC12.82□□□□□ -0.36
Trim3Q9R1R2 Kansl3-206ENSMUST00000187628 336 ntTSL 5 BASIC12.82□□□□□ -0.36
Trim3Q9R1R2 Gm29667-201ENSMUST00000190817 490 ntBASIC12.82□□□□□ -0.36
Trim3Q9R1R2 Gm44608-201ENSMUST00000206827 855 ntBASIC12.82□□□□□ -0.36
Trim3Q9R1R2 Snapc2-203ENSMUST00000208316 1190 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Trim3Q9R1R2 Aga-201ENSMUST00000033920 1181 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trim3Q9R1R2 Adk-207ENSMUST00000224069 1818 ntAPPRIS ALT1 BASIC12.82□□□□□ -0.36
Trim3Q9R1R2 Gm43570-201ENSMUST00000199951 3688 ntBASIC12.82□□□□□ -0.36
Trim3Q9R1R2 Setd1a-202ENSMUST00000047157 5927 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
Trim3Q9R1R2 Cpne1-201ENSMUST00000079312 1683 ntTSL 5 BASIC12.82□□□□□ -0.36
Trim3Q9R1R2 Clcn4-203ENSMUST00000210061 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trim3Q9R1R2 Dnaaf1-201ENSMUST00000093100 2821 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trim3Q9R1R2 Plagl1-202ENSMUST00000121646 5260 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trim3Q9R1R2 Lrfn2-201ENSMUST00000046254 3202 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trim3Q9R1R2 Ap2a1-203ENSMUST00000166972 3449 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trim3Q9R1R2 Etl4-201ENSMUST00000045555 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trim3Q9R1R2 Lysmd4-201ENSMUST00000058771 2898 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 22.6 ms