Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Atp10d-206ENSMUST00000169617 761 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Scn4aQ9ER60 Gm23363-201ENSMUST00000175024 79 ntBASIC18.06■□□□□ 0.48
Scn4aQ9ER60 6430590A07Rik-201ENSMUST00000181813 1032 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Scn4aQ9ER60 Gm10774-201ENSMUST00000188689 204 ntBASIC18.06■□□□□ 0.48
Scn4aQ9ER60 Traf3ip1-201ENSMUST00000047242 3474 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Scn4aQ9ER60 Rab6a-202ENSMUST00000098252 3110 ntAPPRIS ALT1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Scn4aQ9ER60 Zbtb46-205ENSMUST00000180222 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Scn4aQ9ER60 Gm11470-201ENSMUST00000118868 1475 ntBASIC18.06■□□□□ 0.48
Scn4aQ9ER60 Adcyap1r1-204ENSMUST00000165857 1491 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
Scn4aQ9ER60 Aaed1-207ENSMUST00000222570 3011 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Scn4aQ9ER60 Camk2g-217ENSMUST00000226630 1937 ntBASIC18.06■□□□□ 0.48
Scn4aQ9ER60 9930104L06Rik-201ENSMUST00000094769 2911 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Scn4aQ9ER60 Ankrd13a-201ENSMUST00000102578 3717 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Scn4aQ9ER60 Cenpx-203ENSMUST00000106154 873 ntTSL 2 BASIC18.05■□□□□ 0.48
Scn4aQ9ER60 Slc35f4-205ENSMUST00000146164 2480 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Scn4aQ9ER60 Plekhd1os-201ENSMUST00000153297 944 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Scn4aQ9ER60 AC108416.1-202ENSMUST00000228927 1201 ntBASIC18.05■□□□□ 0.48
Scn4aQ9ER60 Ggt7-201ENSMUST00000029131 2614 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Scn4aQ9ER60 Psmd4-203ENSMUST00000117355 1756 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Scn4aQ9ER60 AC130671.2-201ENSMUST00000227224 1621 ntBASIC18.05■□□□□ 0.48
Scn4aQ9ER60 Oscar-202ENSMUST00000108645 1829 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Scn4aQ9ER60 Oscar-201ENSMUST00000039507 1823 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
Scn4aQ9ER60 Dnajc7-201ENSMUST00000014339 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Scn4aQ9ER60 A930017K11Rik-201ENSMUST00000162431 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Scn4aQ9ER60 Nt5dc2-206ENSMUST00000227794 1858 ntAPPRIS ALT2 BASIC18.05■□□□□ 0.48
Scn4aQ9ER60 Tmem119-201ENSMUST00000067853 2242 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Scn4aQ9ER60 Cachd1-201ENSMUST00000030257 5765 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Scn4aQ9ER60 Gm13937-201ENSMUST00000121000 988 ntBASIC18.05■□□□□ 0.48
Scn4aQ9ER60 Gm8199-201ENSMUST00000121323 823 ntBASIC18.05■□□□□ 0.48
Scn4aQ9ER60 Lypd1-203ENSMUST00000159529 989 ntTSL 2 BASIC18.05■□□□□ 0.48
Scn4aQ9ER60 Gm43520-201ENSMUST00000197996 164 ntBASIC18.05■□□□□ 0.48
Scn4aQ9ER60 4933408A14Rik-201ENSMUST00000199037 729 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Scn4aQ9ER60 Phxr2-201ENSMUST00000060761 1159 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
Scn4aQ9ER60 Nat8f6-201ENSMUST00000087656 925 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Scn4aQ9ER60 Hnrnpul2-201ENSMUST00000096753 5726 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Scn4aQ9ER60 Asb10-201ENSMUST00000048302 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Scn4aQ9ER60 Ttl-201ENSMUST00000035812 4567 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Scn4aQ9ER60 Rsrc1-205ENSMUST00000161726 3213 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Scn4aQ9ER60 9330121J05Rik-201ENSMUST00000192267 3009 ntBASIC18.04■□□□□ 0.48
Scn4aQ9ER60 Tmem121b-201ENSMUST00000178687 4869 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
Scn4aQ9ER60 Sfta3-ps-201ENSMUST00000218376 2128 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Scn4aQ9ER60 Rgs20-201ENSMUST00000002533 1778 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
Scn4aQ9ER60 Stat3-207ENSMUST00000138438 2506 ntTSL 5 BASIC18.04■□□□□ 0.48
Scn4aQ9ER60 Arhgef9-219ENSMUST00000199920 1976 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
Scn4aQ9ER60 Tsc22d4-204ENSMUST00000110983 1043 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Scn4aQ9ER60 Gm11980-201ENSMUST00000121445 986 ntBASIC18.04■□□□□ 0.48
Scn4aQ9ER60 Znhit6-206ENSMUST00000199033 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Scn4aQ9ER60 Gm43962-201ENSMUST00000203898 190 ntBASIC18.04■□□□□ 0.48
Scn4aQ9ER60 Gm19994-201ENSMUST00000217086 586 ntBASIC18.04■□□□□ 0.48
Scn4aQ9ER60 Rpl3l-201ENSMUST00000045186 1033 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Scn4aQ9ER60 Troap-201ENSMUST00000039665 2264 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Scn4aQ9ER60 Amfr-201ENSMUST00000053766 3880 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Scn4aQ9ER60 Nxnl1-202ENSMUST00000163659 2730 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
Scn4aQ9ER60 Cfap161-201ENSMUST00000011298 1335 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Scn4aQ9ER60 Olfr139-204ENSMUST00000214111 1311 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
Scn4aQ9ER60 Ephb4-203ENSMUST00000111055 4296 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Scn4aQ9ER60 Sox4-201ENSMUST00000067230 4795 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
Scn4aQ9ER60 B230344G16Rik-201ENSMUST00000180782 2024 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Scn4aQ9ER60 Gm13034-201ENSMUST00000121342 3177 ntBASIC18.03■□□□□ 0.48
Scn4aQ9ER60 Gm12915-201ENSMUST00000131381 1499 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Scn4aQ9ER60 Ube2z-201ENSMUST00000100528 3997 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Scn4aQ9ER60 Magi2-203ENSMUST00000115267 4478 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Scn4aQ9ER60 A630072M18Rik-201ENSMUST00000190567 5410 ntBASIC18.03■□□□□ 0.48
Scn4aQ9ER60 Dixdc1-204ENSMUST00000118707 989 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Scn4aQ9ER60 Gm28192-201ENSMUST00000189381 778 ntTSL 5 BASIC18.03■□□□□ 0.48
Scn4aQ9ER60 8030442B05Rik-201ENSMUST00000192626 1035 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Scn4aQ9ER60 Nkg7-203ENSMUST00000206741 686 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Scn4aQ9ER60 AC125209.1-201ENSMUST00000225812 766 ntBASIC18.03■□□□□ 0.48
Scn4aQ9ER60 Zdhhc2-201ENSMUST00000049389 3381 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Scn4aQ9ER60 Dapk1-207ENSMUST00000226059 5009 ntBASIC18.03■□□□□ 0.48
Scn4aQ9ER60 Sln-201ENSMUST00000048485 1318 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Scn4aQ9ER60 Cpeb4-201ENSMUST00000020543 2312 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Scn4aQ9ER60 Zbtb33-202ENSMUST00000115142 2567 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Scn4aQ9ER60 Sort1-203ENSMUST00000135636 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Scn4aQ9ER60 Brsk2-204ENSMUST00000105989 2149 ntAPPRIS P4 TSL 5 BASIC18.03■□□□□ 0.48
Scn4aQ9ER60 Art3-202ENSMUST00000117108 1408 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
Scn4aQ9ER60 Art3-203ENSMUST00000118106 1401 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Scn4aQ9ER60 Mettl1-202ENSMUST00000120542 1044 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Scn4aQ9ER60 Gm28037-201ENSMUST00000122365 611 ntTSL 3 BASIC18.02■□□□□ 0.48
Scn4aQ9ER60 Gm28071-201ENSMUST00000190355 478 ntBASIC18.02■□□□□ 0.48
Scn4aQ9ER60 Gm43778-201ENSMUST00000199438 199 ntBASIC18.02■□□□□ 0.48
Scn4aQ9ER60 Gm17827-201ENSMUST00000211825 742 ntBASIC18.02■□□□□ 0.48
Scn4aQ9ER60 Higd2a-201ENSMUST00000026986 648 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Scn4aQ9ER60 Hspb2-201ENSMUST00000042790 773 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Scn4aQ9ER60 Snhg17-203ENSMUST00000141809 1553 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Scn4aQ9ER60 A130048G24Rik-201ENSMUST00000193052 2750 ntBASIC18.02■□□□□ 0.48
Scn4aQ9ER60 Cdv3-201ENSMUST00000035484 3387 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
Scn4aQ9ER60 Mecr-201ENSMUST00000030742 1337 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Scn4aQ9ER60 Axin1-202ENSMUST00000118904 2833 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Scn4aQ9ER60 Ulk3-201ENSMUST00000053230 2826 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Scn4aQ9ER60 Fam189b-202ENSMUST00000117278 2593 ntTSL 5 BASIC18.02■□□□□ 0.48
Scn4aQ9ER60 Irs3-201ENSMUST00000057314 2337 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Scn4aQ9ER60 Thegl-201ENSMUST00000031161 1719 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Scn4aQ9ER60 4930453L07Rik-201ENSMUST00000209053 1439 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Scn4aQ9ER60 Plekhh3-206ENSMUST00000164474 3010 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Scn4aQ9ER60 Foxp1-208ENSMUST00000113329 1926 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Scn4aQ9ER60 Msantd3-201ENSMUST00000061135 1589 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Scn4aQ9ER60 Kcnj6-202ENSMUST00000099508 3086 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Scn4aQ9ER60 Gm4862-201ENSMUST00000170405 438 ntBASIC18.02■□□□□ 0.47
Scn4aQ9ER60 Nr1h2-ps-201ENSMUST00000183844 478 ntBASIC18.02■□□□□ 0.47
Retrieved 100 of 76,532 protein–RNA pairs in 31.1 ms