Protein–RNA interactions for Protein: Q8CEI3

Ccdc28a, Coiled-coil domain-containing 28A, mousemouse

Predictions only

Length 192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28aQ8CEI3 Pold3-201ENSMUST00000032969 3069 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Ccdc28aQ8CEI3 Ptk2-201ENSMUST00000110036 4184 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Ccdc28aQ8CEI3 Rev3l-201ENSMUST00000019986 10713 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Ccdc28aQ8CEI3 Cpeb3-204ENSMUST00000126188 4224 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Ccdc28aQ8CEI3 C77080-203ENSMUST00000106051 5049 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Ccdc28aQ8CEI3 C77080-202ENSMUST00000097873 5033 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Ccdc28aQ8CEI3 Zyx-202ENSMUST00000164375 3188 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
Ccdc28aQ8CEI3 Asphd1-202ENSMUST00000106339 518 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
Ccdc28aQ8CEI3 Gm4913-201ENSMUST00000117075 1290 ntBASIC14.36□□□□□ -0.11
Ccdc28aQ8CEI3 Mir1895-201ENSMUST00000122615 79 ntBASIC14.36□□□□□ -0.11
Ccdc28aQ8CEI3 Snhg17-201ENSMUST00000133449 933 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Ccdc28aQ8CEI3 Gm14617-202ENSMUST00000144208 607 ntTSL 3 BASIC14.36□□□□□ -0.11
Ccdc28aQ8CEI3 Hmga2-203ENSMUST00000159699 3810 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Ccdc28aQ8CEI3 Mymx-202ENSMUST00000169137 616 ntAPPRIS P4 TSL 2 BASIC14.36□□□□□ -0.11
Ccdc28aQ8CEI3 Gm18766-201ENSMUST00000189811 808 ntBASIC14.36□□□□□ -0.11
Ccdc28aQ8CEI3 Gm18934-201ENSMUST00000216671 1044 ntBASIC14.36□□□□□ -0.11
Ccdc28aQ8CEI3 Uts2-201ENSMUST00000030803 538 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Ccdc28aQ8CEI3 Yif1b-201ENSMUST00000032809 1111 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
Ccdc28aQ8CEI3 Olfr554-201ENSMUST00000098221 954 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
Ccdc28aQ8CEI3 Polr3g-201ENSMUST00000048993 3054 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Ccdc28aQ8CEI3 Astl-202ENSMUST00000089673 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Ccdc28aQ8CEI3 Acrbp-205ENSMUST00000112414 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Ccdc28aQ8CEI3 Gm10433-202ENSMUST00000146364 1984 ntTSL 2 BASIC14.36□□□□□ -0.11
Ccdc28aQ8CEI3 Tmub1-201ENSMUST00000030799 1333 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Ccdc28aQ8CEI3 Gm4782-201ENSMUST00000168705 2046 ntBASIC14.36□□□□□ -0.11
Ccdc28aQ8CEI3 Wiz-201ENSMUST00000064694 2871 ntAPPRIS P4 TSL 1 (best) BASIC14.36□□□□□ -0.11
Ccdc28aQ8CEI3 Acin1-219ENSMUST00000148754 2373 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
Ccdc28aQ8CEI3 Fhl4-202ENSMUST00000216889 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Ccdc28aQ8CEI3 Epb41l5-208ENSMUST00000191046 6870 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Ccdc28aQ8CEI3 Gm34016-201ENSMUST00000222678 1384 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Ccdc28aQ8CEI3 Bmp4-201ENSMUST00000074077 2064 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Ccdc28aQ8CEI3 Ccdc125-201ENSMUST00000057325 2413 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Ccdc28aQ8CEI3 Matr3-206ENSMUST00000187389 3107 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Ccdc28aQ8CEI3 Adgrv1-205ENSMUST00000126444 3823 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Ccdc28aQ8CEI3 AC139350.1-201ENSMUST00000227064 1594 ntBASIC14.35□□□□□ -0.11
Ccdc28aQ8CEI3 Adra1b-201ENSMUST00000067258 3331 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Ccdc28aQ8CEI3 Lrrc29-201ENSMUST00000070508 1922 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Ccdc28aQ8CEI3 Rhot1-204ENSMUST00000092857 3687 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Ccdc28aQ8CEI3 2900097C17Rik-202ENSMUST00000192863 4915 ntBASIC14.35□□□□□ -0.11
Ccdc28aQ8CEI3 Gpr132-201ENSMUST00000021729 2478 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Ccdc28aQ8CEI3 Myc-205ENSMUST00000161976 2338 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Ccdc28aQ8CEI3 Myc-201ENSMUST00000022971 2338 ntAPPRIS ALT1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Ccdc28aQ8CEI3 Gm5939-201ENSMUST00000119613 2874 ntBASIC14.35□□□□□ -0.11
Ccdc28aQ8CEI3 9130011E15Rik-201ENSMUST00000045396 2896 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Ccdc28aQ8CEI3 Rbl1-201ENSMUST00000029170 4862 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Ccdc28aQ8CEI3 Rab11fip1-202ENSMUST00000054212 7965 ntAPPRIS P3 TSL 5 BASIC14.35□□□□□ -0.11
Ccdc28aQ8CEI3 Gm11779-201ENSMUST00000118541 368 ntBASIC14.35□□□□□ -0.11
Ccdc28aQ8CEI3 H2af-ps-201ENSMUST00000119066 295 ntBASIC14.35□□□□□ -0.11
Ccdc28aQ8CEI3 Mpped1-210ENSMUST00000172115 795 ntTSL 3 BASIC14.35□□□□□ -0.11
Ccdc28aQ8CEI3 Mpped1-211ENSMUST00000172398 795 ntTSL 3 BASIC14.35□□□□□ -0.11
Ccdc28aQ8CEI3 Znrf1-213ENSMUST00000174333 515 ntTSL 3 BASIC14.35□□□□□ -0.11
Ccdc28aQ8CEI3 4930502C17Rik-201ENSMUST00000200282 948 ntBASIC14.35□□□□□ -0.11
Ccdc28aQ8CEI3 Gm18206-201ENSMUST00000207027 926 ntBASIC14.35□□□□□ -0.11
Ccdc28aQ8CEI3 AI463170-204ENSMUST00000220157 447 ntTSL 3 BASIC14.35□□□□□ -0.11
Ccdc28aQ8CEI3 AC090659.2-201ENSMUST00000225378 1186 ntBASIC14.35□□□□□ -0.11
Ccdc28aQ8CEI3 Aspdh-201ENSMUST00000035929 1017 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Ccdc28aQ8CEI3 Gtpbp10-201ENSMUST00000088842 941 ntTSL 5 BASIC14.35□□□□□ -0.11
Ccdc28aQ8CEI3 Wdr83-201ENSMUST00000093357 1238 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Ccdc28aQ8CEI3 Ctgf-201ENSMUST00000020171 2398 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Ccdc28aQ8CEI3 Klhl26-203ENSMUST00000209415 2919 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Ccdc28aQ8CEI3 Kdm3a-214ENSMUST00000207023 4753 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Ccdc28aQ8CEI3 Hadhb-202ENSMUST00000114783 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Ccdc28aQ8CEI3 Iffo2-202ENSMUST00000123827 2036 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Ccdc28aQ8CEI3 Sh3bp4-201ENSMUST00000066279 4995 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Ccdc28aQ8CEI3 Ubap2l-202ENSMUST00000064639 4073 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Ccdc28aQ8CEI3 Creb3-201ENSMUST00000102944 1884 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Ccdc28aQ8CEI3 Dnaaf1-201ENSMUST00000093100 2821 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Ccdc28aQ8CEI3 Igf2r-201ENSMUST00000024599 8887 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Ccdc28aQ8CEI3 Armcx1-202ENSMUST00000051256 2253 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Ccdc28aQ8CEI3 Plekha7-203ENSMUST00000181998 5149 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Ccdc28aQ8CEI3 Mthfsd-202ENSMUST00000116415 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Ccdc28aQ8CEI3 9930014A18Rik-201ENSMUST00000180730 3074 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Ccdc28aQ8CEI3 Samd7-201ENSMUST00000108262 3144 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Ccdc28aQ8CEI3 Ppp1r13l-201ENSMUST00000047621 3130 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Ccdc28aQ8CEI3 Gspt1-205ENSMUST00000167571 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Ccdc28aQ8CEI3 Aip-202ENSMUST00000117831 1378 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ccdc28aQ8CEI3 Lcmt1-201ENSMUST00000033025 1369 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ccdc28aQ8CEI3 Fgfr1-203ENSMUST00000119398 3789 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Ccdc28aQ8CEI3 Rims1-205ENSMUST00000097811 6446 ntAPPRIS P5 TSL 5 BASIC14.34□□□□□ -0.11
Ccdc28aQ8CEI3 Zfp142-203ENSMUST00000113737 7473 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ccdc28aQ8CEI3 Wwox-201ENSMUST00000004756 2244 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ccdc28aQ8CEI3 Tnrc6c-201ENSMUST00000026658 8724 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Ccdc28aQ8CEI3 Tyw1-203ENSMUST00000100662 1867 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Ccdc28aQ8CEI3 Golim4-208ENSMUST00000167078 2902 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ccdc28aQ8CEI3 Ell3-202ENSMUST00000116432 1674 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ccdc28aQ8CEI3 Zfp575-201ENSMUST00000094705 2741 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ccdc28aQ8CEI3 Sema6c-203ENSMUST00000107217 3595 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Ccdc28aQ8CEI3 Pex12-207ENSMUST00000176518 2501 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ccdc28aQ8CEI3 Dysf-213ENSMUST00000203803 6590 ntTSL 5 BASIC14.34□□□□□ -0.11
Ccdc28aQ8CEI3 Med28-202ENSMUST00000118833 734 ntTSL 2 BASIC14.34□□□□□ -0.11
Ccdc28aQ8CEI3 Crybb3-204ENSMUST00000119627 828 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
Ccdc28aQ8CEI3 Cdkn1a-203ENSMUST00000122348 857 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ccdc28aQ8CEI3 Thap4-205ENSMUST00000189728 713 ntTSL 2 BASIC14.34□□□□□ -0.11
Ccdc28aQ8CEI3 Mpv17-203ENSMUST00000200833 1171 ntTSL 5 BASIC14.34□□□□□ -0.11
Ccdc28aQ8CEI3 9430007M09Rik-201ENSMUST00000201947 804 ntBASIC14.34□□□□□ -0.11
Ccdc28aQ8CEI3 Gm42802-201ENSMUST00000202475 456 ntTSL 2 BASIC14.34□□□□□ -0.11
Ccdc28aQ8CEI3 Pts-206ENSMUST00000214873 511 ntTSL 5 BASIC14.34□□□□□ -0.11
Ccdc28aQ8CEI3 Gm16476-201ENSMUST00000221544 139 ntBASIC14.34□□□□□ -0.11
Ccdc28aQ8CEI3 Hnrnpa1l2-ps2-201ENSMUST00000022493 963 ntBASIC14.34□□□□□ -0.11
Ccdc28aQ8CEI3 AC154806.6-201ENSMUST00000228192 202 ntBASIC14.34□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 47.4 ms