Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 Hk1-202ENSMUST00000099691 4278 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Ccdc40Q8BI79 Sall3-201ENSMUST00000057950 6886 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Ccdc40Q8BI79 Ngef-201ENSMUST00000027477 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Ccdc40Q8BI79 Msmp-201ENSMUST00000107884 743 ntAPPRIS P1 TSL 3 BASIC14.27□□□□□ -0.13
Ccdc40Q8BI79 3000002C10Rik-202ENSMUST00000133495 1008 ntBASIC14.27□□□□□ -0.13
Ccdc40Q8BI79 Cend1-204ENSMUST00000164387 1206 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ccdc40Q8BI79 Styxl1-207ENSMUST00000177559 1236 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
Ccdc40Q8BI79 Gm37171-201ENSMUST00000192636 1185 ntBASIC14.27□□□□□ -0.13
Ccdc40Q8BI79 Gm42787-201ENSMUST00000200879 1164 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Ccdc40Q8BI79 Tmem38a-203ENSMUST00000212763 882 ntTSL 3 BASIC14.27□□□□□ -0.13
Ccdc40Q8BI79 Elof1-203ENSMUST00000213233 810 ntAPPRIS P1 TSL 3 BASIC14.27□□□□□ -0.13
Ccdc40Q8BI79 Slitrk3-201ENSMUST00000059407 3587 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ccdc40Q8BI79 Scarb2-201ENSMUST00000031377 4698 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ccdc40Q8BI79 Gm853-201ENSMUST00000023884 2314 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ccdc40Q8BI79 Rab11fip1-201ENSMUST00000033878 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ccdc40Q8BI79 Cyfip1-201ENSMUST00000032629 6440 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ccdc40Q8BI79 Hp1bp3-202ENSMUST00000097836 3113 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ccdc40Q8BI79 Mrgprf-201ENSMUST00000033386 2087 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ccdc40Q8BI79 Arhgap10-201ENSMUST00000076316 3084 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ccdc40Q8BI79 Gm5089-201ENSMUST00000081580 2008 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ccdc40Q8BI79 Hif1a-201ENSMUST00000021530 4724 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ccdc40Q8BI79 Zfp711-202ENSMUST00000113409 4330 ntAPPRIS P2 TSL 5 BASIC14.27□□□□□ -0.13
Ccdc40Q8BI79 Tbkbp1-204ENSMUST00000107615 3333 ntAPPRIS P2 TSL 5 BASIC14.26□□□□□ -0.13
Ccdc40Q8BI79 Pds5b-201ENSMUST00000016569 7417 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc40Q8BI79 Zfp467-204ENSMUST00000114559 3163 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc40Q8BI79 C130080G10Rik-203ENSMUST00000154140 1564 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc40Q8BI79 Aifm2-203ENSMUST00000099706 3086 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc40Q8BI79 Serpinh1-201ENSMUST00000094154 2215 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc40Q8BI79 Pomt2-201ENSMUST00000037788 5064 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc40Q8BI79 Bcas3-201ENSMUST00000074875 2814 ntAPPRIS P3 TSL 5 BASIC14.26□□□□□ -0.13
Ccdc40Q8BI79 Atxn7l1os2-201ENSMUST00000138617 2019 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc40Q8BI79 Pbx2-203ENSMUST00000173328 1990 ntTSL 2 BASIC14.26□□□□□ -0.13
Ccdc40Q8BI79 Il15-201ENSMUST00000034148 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc40Q8BI79 Trappc6a-202ENSMUST00000108455 651 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc40Q8BI79 Mir1897-201ENSMUST00000122581 272 ntBASIC14.26□□□□□ -0.13
Ccdc40Q8BI79 Gm15384-201ENSMUST00000138832 486 ntTSL 5 BASIC14.26□□□□□ -0.13
Ccdc40Q8BI79 Rpl27a-203ENSMUST00000143107 1158 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc40Q8BI79 Gm22175-201ENSMUST00000175007 78 ntBASIC14.26□□□□□ -0.13
Ccdc40Q8BI79 Gm3809-201ENSMUST00000180973 1006 ntBASIC14.26□□□□□ -0.13
Ccdc40Q8BI79 Gm2445-201ENSMUST00000182798 989 ntBASIC14.26□□□□□ -0.13
Ccdc40Q8BI79 Gm33320-201ENSMUST00000192232 530 ntBASIC14.26□□□□□ -0.13
Ccdc40Q8BI79 Cyb561d2-205ENSMUST00000195235 1162 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc40Q8BI79 Gm44081-201ENSMUST00000204406 643 ntTSL 3 BASIC14.26□□□□□ -0.13
Ccdc40Q8BI79 AC149294.4-201ENSMUST00000227870 882 ntBASIC14.26□□□□□ -0.13
Ccdc40Q8BI79 Selenow-201ENSMUST00000044355 736 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc40Q8BI79 Casp16-ps-201ENSMUST00000088673 531 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
Ccdc40Q8BI79 Polr2g-201ENSMUST00000096261 868 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc40Q8BI79 Clcnkb-202ENSMUST00000105788 2490 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc40Q8BI79 Mypn-202ENSMUST00000218978 1833 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc40Q8BI79 Mpp4-201ENSMUST00000066374 2344 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
Ccdc40Q8BI79 Mpp4-202ENSMUST00000078874 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc40Q8BI79 Sesn3-207ENSMUST00000209187 1700 ntTSL 5 BASIC14.26□□□□□ -0.13
Ccdc40Q8BI79 Slc37a1-201ENSMUST00000165149 3354 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc40Q8BI79 Kcnj3-203ENSMUST00000112633 1679 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc40Q8BI79 Ubr7-201ENSMUST00000046404 3261 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc40Q8BI79 C530008M17Rik-204ENSMUST00000121160 6921 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
Ccdc40Q8BI79 Il20ra-201ENSMUST00000020185 2105 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc40Q8BI79 Nfyb-204ENSMUST00000130911 2554 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc40Q8BI79 Gpc2-205ENSMUST00000161827 2586 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc40Q8BI79 Pus1-207ENSMUST00000170468 1510 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Ccdc40Q8BI79 Sbds-201ENSMUST00000026387 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ccdc40Q8BI79 Ywhaq-201ENSMUST00000049531 1515 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ccdc40Q8BI79 Rad9a-201ENSMUST00000025740 2046 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ccdc40Q8BI79 Hipk4-202ENSMUST00000108353 2409 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ccdc40Q8BI79 Arhgap28-201ENSMUST00000024840 5322 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ccdc40Q8BI79 Lysmd4-201ENSMUST00000058771 2898 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ccdc40Q8BI79 Tyw1-203ENSMUST00000100662 1867 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Ccdc40Q8BI79 Col26a1-202ENSMUST00000111103 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ccdc40Q8BI79 Tepsin-202ENSMUST00000093901 2770 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ccdc40Q8BI79 Rap1gap-203ENSMUST00000105835 4140 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Ccdc40Q8BI79 Eif3j1-201ENSMUST00000028668 5413 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ccdc40Q8BI79 Rai1-202ENSMUST00000090806 7217 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Ccdc40Q8BI79 Mpl-203ENSMUST00000106375 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ccdc40Q8BI79 Gm42480-201ENSMUST00000198434 2595 ntBASIC14.25□□□□□ -0.13
Ccdc40Q8BI79 Commd6-201ENSMUST00000100339 1090 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ccdc40Q8BI79 Ninj2-202ENSMUST00000112711 853 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ccdc40Q8BI79 Gm9229-201ENSMUST00000222777 126 ntBASIC14.25□□□□□ -0.13
Ccdc40Q8BI79 Shd-206ENSMUST00000225145 998 ntBASIC14.25□□□□□ -0.13
Ccdc40Q8BI79 AC154806.6-201ENSMUST00000228192 202 ntBASIC14.25□□□□□ -0.13
Ccdc40Q8BI79 Polr2j-201ENSMUST00000041366 646 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ccdc40Q8BI79 Rtl8c-201ENSMUST00000063384 401 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
Ccdc40Q8BI79 Slfn2-201ENSMUST00000038038 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ccdc40Q8BI79 B230319C09Rik-201ENSMUST00000063376 1689 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Ccdc40Q8BI79 P4hb-201ENSMUST00000026122 2861 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ccdc40Q8BI79 Arcn1-201ENSMUST00000034607 4072 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ccdc40Q8BI79 Tmem181b-ps-203ENSMUST00000188746 1626 ntTSL 5 BASIC14.25□□□□□ -0.13
Ccdc40Q8BI79 Gm12020-201ENSMUST00000119030 2042 ntBASIC14.25□□□□□ -0.13
Ccdc40Q8BI79 Bicd1-202ENSMUST00000086829 9667 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ccdc40Q8BI79 Zhx2-201ENSMUST00000096430 4376 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ccdc40Q8BI79 Fer-202ENSMUST00000038080 2365 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Ccdc40Q8BI79 Tmod2-207ENSMUST00000215462 1564 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Ccdc40Q8BI79 Cpeb1-201ENSMUST00000098331 3111 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ccdc40Q8BI79 Cep85-201ENSMUST00000040271 3893 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ccdc40Q8BI79 Stk38-202ENSMUST00000119274 1939 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ccdc40Q8BI79 Ankfn1-201ENSMUST00000050983 2665 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Ccdc40Q8BI79 Ccnb2-201ENSMUST00000034742 1531 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ccdc40Q8BI79 Lmo7-201ENSMUST00000100337 6092 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ccdc40Q8BI79 Amdhd2-201ENSMUST00000040735 1496 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ccdc40Q8BI79 Gm7114-201ENSMUST00000190159 1789 ntBASIC14.24□□□□□ -0.13
Ccdc40Q8BI79 Chst4-202ENSMUST00000211894 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 38.8 ms