Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Wwox-201ENSMUST00000004756 2244 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trim56Q80VI1 Cnnm2-202ENSMUST00000099373 3558 ntAPPRIS P4 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trim56Q80VI1 Mesd-201ENSMUST00000094215 4492 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trim56Q80VI1 Gm26777-201ENSMUST00000181852 2573 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Trim56Q80VI1 Nfasc-208ENSMUST00000188307 3049 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Trim56Q80VI1 Hsd3b4-202ENSMUST00000196861 1610 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trim56Q80VI1 Gm10681-201ENSMUST00000058728 1610 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trim56Q80VI1 Gpr4-201ENSMUST00000060225 2882 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trim56Q80VI1 Oprm1-214ENSMUST00000105605 1503 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Trim56Q80VI1 Oprm1-201ENSMUST00000000783 1500 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Trim56Q80VI1 Pxylp1-203ENSMUST00000119141 2768 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trim56Q80VI1 Barhl2-201ENSMUST00000086795 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trim56Q80VI1 Ctps-201ENSMUST00000030381 2705 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trim56Q80VI1 Cdk18-201ENSMUST00000027697 4355 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trim56Q80VI1 Zfp606-201ENSMUST00000098822 4748 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trim56Q80VI1 Adamts3-204ENSMUST00000198151 1833 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Trim56Q80VI1 Kank2-201ENSMUST00000034717 5040 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trim56Q80VI1 Dlg5-202ENSMUST00000073687 7784 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Trim56Q80VI1 Otud4-202ENSMUST00000173078 7354 ntAPPRIS P4 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trim56Q80VI1 Tub-202ENSMUST00000119474 2097 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Trim56Q80VI1 Anks1b-214ENSMUST00000182356 7561 ntTSL 5 BASIC16.03■□□□□ 0.16
Trim56Q80VI1 St6galnac6-209ENSMUST00000131229 1013 ntTSL 2 BASIC16.03■□□□□ 0.16
Trim56Q80VI1 Slc2a9-207ENSMUST00000143758 1296 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Trim56Q80VI1 Gm10863-205ENSMUST00000148028 905 ntTSL 3 BASIC16.03■□□□□ 0.16
Trim56Q80VI1 4930478K11Rik-201ENSMUST00000181875 715 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Trim56Q80VI1 Dkkl1-204ENSMUST00000210741 662 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
Trim56Q80VI1 Gm5035-201ENSMUST00000215581 927 ntBASIC16.03■□□□□ 0.16
Trim56Q80VI1 AC130829.1-201ENSMUST00000221548 494 ntBASIC16.03■□□□□ 0.16
Trim56Q80VI1 Cyth2-208ENSMUST00000211783 1983 ntTSL 5 BASIC16.03■□□□□ 0.16
Trim56Q80VI1 Elovl6-205ENSMUST00000199910 2610 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trim56Q80VI1 1300017J02Rik-201ENSMUST00000035163 2284 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trim56Q80VI1 Unc119b-201ENSMUST00000060798 3659 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trim56Q80VI1 Nptn-206ENSMUST00000176557 1898 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Trim56Q80VI1 Dpysl3-204ENSMUST00000121805 5484 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Trim56Q80VI1 Ppcdc-209ENSMUST00000214624 1814 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Trim56Q80VI1 4930556M19Rik-201ENSMUST00000180604 2468 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Trim56Q80VI1 Prg4-207ENSMUST00000162367 1480 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Trim56Q80VI1 Gsdmd-201ENSMUST00000023238 1776 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trim56Q80VI1 Gfod1-201ENSMUST00000055341 6928 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trim56Q80VI1 Map7d1-201ENSMUST00000061143 3351 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trim56Q80VI1 Zfp575-201ENSMUST00000094705 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trim56Q80VI1 Gpr19-204ENSMUST00000116515 2075 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Trim56Q80VI1 Ctbp1-212ENSMUST00000202962 3595 ntTSL 2 BASIC16.02■□□□□ 0.16
Trim56Q80VI1 Slc25a21-201ENSMUST00000044634 2609 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
Trim56Q80VI1 Nell1-201ENSMUST00000081872 6617 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Trim56Q80VI1 Zc3hc1-210ENSMUST00000152391 1673 ntTSL 5 BASIC16.02■□□□□ 0.16
Trim56Q80VI1 Radil-204ENSMUST00000110785 3708 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
Trim56Q80VI1 Nek1-202ENSMUST00000120689 5478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
Trim56Q80VI1 Sirt3-210ENSMUST00000211179 1606 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
Trim56Q80VI1 Ntn4-201ENSMUST00000020204 3646 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Trim56Q80VI1 Bckdha-201ENSMUST00000071329 1899 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Trim56Q80VI1 Fam187a-201ENSMUST00000100369 1563 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
Trim56Q80VI1 Gosr2-202ENSMUST00000107013 1044 ntTSL 2 BASIC16.02■□□□□ 0.16
Trim56Q80VI1 Camp-201ENSMUST00000112022 758 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Trim56Q80VI1 Isg20-202ENSMUST00000118867 697 ntAPPRIS P1 TSL 3 BASIC16.02■□□□□ 0.16
Trim56Q80VI1 Kxd1-204ENSMUST00000121623 884 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
Trim56Q80VI1 Mpv17-207ENSMUST00000201491 923 ntTSL 2 BASIC16.02■□□□□ 0.16
Trim56Q80VI1 Isg20-201ENSMUST00000038142 1083 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Trim56Q80VI1 Slc22a2-201ENSMUST00000046959 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Trim56Q80VI1 Kxd1-201ENSMUST00000093456 1216 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Trim56Q80VI1 Gm13387-202ENSMUST00000131147 2646 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
Trim56Q80VI1 Rcsd1-201ENSMUST00000040357 2622 ntAPPRIS P4 TSL 1 (best) BASIC16.02■□□□□ 0.15
Trim56Q80VI1 Kif3a-208ENSMUST00000173744 2257 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
Trim56Q80VI1 Ablim2-201ENSMUST00000054598 3564 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
Trim56Q80VI1 Ppp1r15b-201ENSMUST00000052529 5594 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Trim56Q80VI1 Vill-203ENSMUST00000126251 1411 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
Trim56Q80VI1 Gm10371-201ENSMUST00000127429 1411 ntTSL 2 BASIC16.02■□□□□ 0.15
Trim56Q80VI1 Mutyh-201ENSMUST00000102699 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Trim56Q80VI1 Nol4-208ENSMUST00000164893 2175 ntAPPRIS ALT1 TSL 5 BASIC16.02■□□□□ 0.15
Trim56Q80VI1 4732471J01Rik-203ENSMUST00000206300 1887 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Trim56Q80VI1 Irak3-201ENSMUST00000020448 3097 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trim56Q80VI1 Mafk-201ENSMUST00000018287 2849 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trim56Q80VI1 Gid4-201ENSMUST00000070681 4283 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trim56Q80VI1 Aqp6-201ENSMUST00000023754 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trim56Q80VI1 Nr3c2-204ENSMUST00000109913 5916 ntAPPRIS P2 TSL 5 BASIC16.01■□□□□ 0.15
Trim56Q80VI1 Pde4a-203ENSMUST00000115458 2962 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trim56Q80VI1 Myo19-202ENSMUST00000093969 4091 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
Trim56Q80VI1 Gm15806-201ENSMUST00000120696 955 ntBASIC16.01■□□□□ 0.15
Trim56Q80VI1 Gm15317-201ENSMUST00000129569 699 ntTSL 3 BASIC16.01■□□□□ 0.15
Trim56Q80VI1 Abhd14a-202ENSMUST00000171678 1262 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trim56Q80VI1 Gm38144-201ENSMUST00000192790 465 ntBASIC16.01■□□□□ 0.15
Trim56Q80VI1 Gm4610-201ENSMUST00000198222 905 ntTSL 5 BASIC16.01■□□□□ 0.15
Trim56Q80VI1 1810059H22Rik-208ENSMUST00000204941 642 ntTSL 2 BASIC16.01■□□□□ 0.15
Trim56Q80VI1 Pemt-201ENSMUST00000000310 953 ntAPPRIS P1 TSL 3 BASIC16.01■□□□□ 0.15
Trim56Q80VI1 Alox12e-201ENSMUST00000019051 2422 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trim56Q80VI1 Ubqln2-201ENSMUST00000060714 3344 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
Trim56Q80VI1 Fam53b-203ENSMUST00000097999 5465 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trim56Q80VI1 Eif4g1-201ENSMUST00000044783 5444 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trim56Q80VI1 Hoxd3-203ENSMUST00000111983 2968 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trim56Q80VI1 Zc3h13-203ENSMUST00000227049 6144 ntAPPRIS ALT2 BASIC16.01■□□□□ 0.15
Trim56Q80VI1 Amz1-201ENSMUST00000060918 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trim56Q80VI1 Peli1-201ENSMUST00000093290 3514 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trim56Q80VI1 Slit1-202ENSMUST00000166496 4556 ntTSL 5 BASIC16.01■□□□□ 0.15
Trim56Q80VI1 Pnkd-203ENSMUST00000087226 3054 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
Trim56Q80VI1 Edem3-203ENSMUST00000188145 3262 ntTSL 5 BASIC16■□□□□ 0.15
Trim56Q80VI1 Phf23-209ENSMUST00000153684 1797 ntTSL 1 (best) BASIC16■□□□□ 0.15
Trim56Q80VI1 Pigg-202ENSMUST00000118910 3030 ntTSL 5 BASIC16■□□□□ 0.15
Trim56Q80VI1 Rbm34-201ENSMUST00000045994 3424 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Trim56Q80VI1 Cask-204ENSMUST00000115438 8366 ntTSL 1 (best) BASIC16■□□□□ 0.15
Trim56Q80VI1 Cobl-208ENSMUST00000172919 2566 ntTSL 1 (best) BASIC16■□□□□ 0.15
Retrieved 100 of 76,532 protein–RNA pairs in 30.1 ms