Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Ppip5k2-202ENSMUST00000112845 6239 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
Col28a1Q2UY11 Bcl2-201ENSMUST00000112751 7191 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Col28a1Q2UY11 Sv2c-203ENSMUST00000182289 2197 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Col28a1Q2UY11 Armcx1-204ENSMUST00000113198 2085 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
Col28a1Q2UY11 Hspa8-202ENSMUST00000117557 2019 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Col28a1Q2UY11 AC154725.1-201ENSMUST00000224826 1961 ntBASIC13.25□□□□□ -0.29
Col28a1Q2UY11 Phf21b-201ENSMUST00000016768 3377 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Col28a1Q2UY11 Nkain3-201ENSMUST00000102998 3098 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Col28a1Q2UY11 Ccnb2-201ENSMUST00000034742 1531 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Col28a1Q2UY11 Tfap2c-202ENSMUST00000099058 2985 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Col28a1Q2UY11 Crhr2-209ENSMUST00000213026 1443 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Col28a1Q2UY11 Tppp3-203ENSMUST00000177126 1396 ntAPPRIS P1 TSL 3 BASIC13.25□□□□□ -0.29
Col28a1Q2UY11 Nrxn1-207ENSMUST00000160844 9309 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Col28a1Q2UY11 Fcgr1-201ENSMUST00000029748 2589 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Col28a1Q2UY11 Ninj2-202ENSMUST00000112711 853 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
Col28a1Q2UY11 Crem-221ENSMUST00000142690 1256 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Col28a1Q2UY11 Gm16046-203ENSMUST00000150889 1001 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Col28a1Q2UY11 B3gat1-204ENSMUST00000160899 3801 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Col28a1Q2UY11 Hoga1-204ENSMUST00000172244 631 ntTSL 5 BASIC13.25□□□□□ -0.29
Col28a1Q2UY11 Gm27920-201ENSMUST00000183953 96 ntBASIC13.25□□□□□ -0.29
Col28a1Q2UY11 Gm28237-202ENSMUST00000189477 748 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Col28a1Q2UY11 Klrg2-202ENSMUST00000201345 1225 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
Col28a1Q2UY11 Gm38554-201ENSMUST00000201639 708 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Col28a1Q2UY11 Gm8239-201ENSMUST00000204094 444 ntTSL 2 BASIC13.25□□□□□ -0.29
Col28a1Q2UY11 B9d2-203ENSMUST00000205658 995 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Col28a1Q2UY11 Tspan32-211ENSMUST00000207211 1220 ntTSL 5 BASIC13.25□□□□□ -0.29
Col28a1Q2UY11 CT030704.2-201ENSMUST00000228887 494 ntBASIC13.25□□□□□ -0.29
Col28a1Q2UY11 Gm2115-201ENSMUST00000180387 7055 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Col28a1Q2UY11 4921504A21Rik-201ENSMUST00000180594 2156 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Col28a1Q2UY11 Fmn2-201ENSMUST00000030039 6442 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Col28a1Q2UY11 0610010F05Rik-208ENSMUST00000180260 4128 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Col28a1Q2UY11 Prss36-201ENSMUST00000094026 3061 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
Col28a1Q2UY11 Kbtbd6-202ENSMUST00000226192 2984 ntAPPRIS P2 BASIC13.25□□□□□ -0.29
Col28a1Q2UY11 Slc6a4-202ENSMUST00000108402 2796 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
Col28a1Q2UY11 Tgm1-203ENSMUST00000178034 2730 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Col28a1Q2UY11 Il34-204ENSMUST00000150680 1796 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Col28a1Q2UY11 Rbmx2-201ENSMUST00000033433 1747 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Col28a1Q2UY11 Ephb1-202ENSMUST00000085169 4101 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Col28a1Q2UY11 Ppp4r3b-202ENSMUST00000102856 2410 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Col28a1Q2UY11 Brinp1-201ENSMUST00000030036 3212 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Col28a1Q2UY11 Oprm1-215ENSMUST00000105607 2369 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Col28a1Q2UY11 Fktn-204ENSMUST00000221657 6241 ntTSL 5 BASIC13.24□□□□□ -0.29
Col28a1Q2UY11 Pax6-202ENSMUST00000090397 3069 ntAPPRIS ALT1 TSL 5 BASIC13.24□□□□□ -0.29
Col28a1Q2UY11 Atp6ap1-201ENSMUST00000019231 2189 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Col28a1Q2UY11 Asb10-202ENSMUST00000117900 1432 ntTSL 5 BASIC13.24□□□□□ -0.29
Col28a1Q2UY11 Tcf4-210ENSMUST00000128706 2066 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Col28a1Q2UY11 Map6-205ENSMUST00000207883 3431 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
Col28a1Q2UY11 Ccdc162-203ENSMUST00000099932 2742 ntTSL 5 BASIC13.24□□□□□ -0.29
Col28a1Q2UY11 Phka1-203ENSMUST00000113611 6064 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
Col28a1Q2UY11 Phka1-205ENSMUST00000120270 6064 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
Col28a1Q2UY11 Snx29-207ENSMUST00000180792 2667 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
Col28a1Q2UY11 Psmc5-201ENSMUST00000021049 1316 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Col28a1Q2UY11 Clec18a-203ENSMUST00000188466 1973 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
Col28a1Q2UY11 Clec18a-201ENSMUST00000039597 1998 ntAPPRIS P5 TSL 5 BASIC13.24□□□□□ -0.29
Col28a1Q2UY11 Bpi-203ENSMUST00000109500 1911 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
Col28a1Q2UY11 Gm25287-201ENSMUST00000103846 110 ntBASIC13.24□□□□□ -0.29
Col28a1Q2UY11 Gm22918-201ENSMUST00000103855 110 ntBASIC13.24□□□□□ -0.29
Col28a1Q2UY11 Gm26771-201ENSMUST00000180472 1082 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Col28a1Q2UY11 Gm43691-201ENSMUST00000196625 697 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Col28a1Q2UY11 Hrasls5-201ENSMUST00000025929 1063 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Col28a1Q2UY11 Iqcf3-201ENSMUST00000062917 1131 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Col28a1Q2UY11 Arid3a-201ENSMUST00000019708 5361 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
Col28a1Q2UY11 Ablim2-201ENSMUST00000054598 3564 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
Col28a1Q2UY11 Dph3-202ENSMUST00000067955 2953 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Col28a1Q2UY11 Gstcd-202ENSMUST00000080583 2394 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Col28a1Q2UY11 Adk-201ENSMUST00000045376 1782 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Col28a1Q2UY11 Tlk2-209ENSMUST00000145048 2776 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Col28a1Q2UY11 Caskin2-201ENSMUST00000041684 4929 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Col28a1Q2UY11 Irf1-202ENSMUST00000108920 2137 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
Col28a1Q2UY11 Kcnk16-202ENSMUST00000225596 2127 ntBASIC13.24□□□□□ -0.29
Col28a1Q2UY11 Hmga1-201ENSMUST00000114888 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Col28a1Q2UY11 Clmp-201ENSMUST00000034522 4154 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Col28a1Q2UY11 Ppp1r13l-201ENSMUST00000047621 3130 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Col28a1Q2UY11 Lmntd2-201ENSMUST00000026573 2095 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Col28a1Q2UY11 1810058I24Rik-203ENSMUST00000152147 2521 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Col28a1Q2UY11 Pde8b-207ENSMUST00000162153 2474 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Col28a1Q2UY11 Mks1-201ENSMUST00000038196 2499 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Col28a1Q2UY11 Gm10433-202ENSMUST00000146364 1984 ntTSL 2 BASIC13.23□□□□□ -0.29
Col28a1Q2UY11 Gm13730-201ENSMUST00000121036 1462 ntBASIC13.23□□□□□ -0.29
Col28a1Q2UY11 1810008I18Rik-201ENSMUST00000185464 2419 ntBASIC13.23□□□□□ -0.29
Col28a1Q2UY11 Gm13613-201ENSMUST00000126240 1444 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Col28a1Q2UY11 Atg7-207ENSMUST00000182428 2264 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
Col28a1Q2UY11 4930513N10Rik-204ENSMUST00000212647 3957 ntBASIC13.23□□□□□ -0.29
Col28a1Q2UY11 Rfc3-201ENSMUST00000038131 1317 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Col28a1Q2UY11 Rnf40-202ENSMUST00000205694 5279 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Col28a1Q2UY11 Eya1-203ENSMUST00000168081 4366 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Col28a1Q2UY11 Epha8-201ENSMUST00000030420 4713 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Col28a1Q2UY11 Dnajc8-205ENSMUST00000105939 746 ntTSL 5 BASIC13.23□□□□□ -0.29
Col28a1Q2UY11 Hist1h2br-202ENSMUST00000110476 381 ntAPPRIS P1 BASIC13.23□□□□□ -0.29
Col28a1Q2UY11 Pex11g-202ENSMUST00000111081 666 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Col28a1Q2UY11 Tmem262-201ENSMUST00000143303 545 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Col28a1Q2UY11 Nabp1-202ENSMUST00000185534 708 ntTSL 2 BASIC13.23□□□□□ -0.29
Col28a1Q2UY11 Gm37277-201ENSMUST00000194052 1111 ntBASIC13.23□□□□□ -0.29
Col28a1Q2UY11 Gm44719-201ENSMUST00000206404 149 ntBASIC13.23□□□□□ -0.29
Col28a1Q2UY11 Gm45242-201ENSMUST00000210666 2129 ntBASIC13.23□□□□□ -0.29
Col28a1Q2UY11 Cplx3-202ENSMUST00000215487 594 ntTSL 3 BASIC13.23□□□□□ -0.29
Col28a1Q2UY11 AC125206.2-201ENSMUST00000217454 574 ntBASIC13.23□□□□□ -0.29
Col28a1Q2UY11 CT030684.1-201ENSMUST00000227292 914 ntBASIC13.23□□□□□ -0.29
Col28a1Q2UY11 Gzma-201ENSMUST00000023897 878 ntAPPRIS P2 TSL 1 (best) BASIC13.23□□□□□ -0.29
Col28a1Q2UY11 Eef1akmt2-201ENSMUST00000033257 1107 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Retrieved 100 of 76,532 protein–RNA pairs in 36.5 ms