Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Igbp1b-201ENSMUST00000054786 1456 ntAPPRIS P1 BASIC12.89□□□□□ -0.35
Cdx2P43241 Kitl-202ENSMUST00000105283 5648 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdx2P43241 Rps6ka5-209ENSMUST00000222731 5642 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdx2P43241 Crhr2-201ENSMUST00000003568 2695 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Cdx2P43241 Slc39a11-201ENSMUST00000042657 2781 ntAPPRIS ALT2 TSL 2 BASIC12.89□□□□□ -0.35
Cdx2P43241 Bach2os-201ENSMUST00000126225 1661 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Cdx2P43241 Fbxl4-201ENSMUST00000039234 2546 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdx2P43241 Scarf1-202ENSMUST00000118243 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdx2P43241 Kif17-201ENSMUST00000030539 3453 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdx2P43241 Acox3-204ENSMUST00000114238 2825 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdx2P43241 Mpl-201ENSMUST00000006556 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdx2P43241 Dpysl3-204ENSMUST00000121805 5484 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Cdx2P43241 Uck2-202ENSMUST00000053686 4731 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdx2P43241 Gm43579-201ENSMUST00000202387 1307 ntBASIC12.88□□□□□ -0.35
Cdx2P43241 Slc25a22-202ENSMUST00000106006 2277 ntTSL 5 BASIC12.88□□□□□ -0.35
Cdx2P43241 Mst1-201ENSMUST00000035211 2262 ntAPPRIS P2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdx2P43241 Troap-201ENSMUST00000039665 2264 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdx2P43241 Nyap1-204ENSMUST00000212152 2499 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdx2P43241 Poli-201ENSMUST00000043286 2591 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Cdx2P43241 Tpk1-201ENSMUST00000067888 2671 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdx2P43241 Reps2-202ENSMUST00000112334 7675 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdx2P43241 Mlx-202ENSMUST00000107302 1826 ntAPPRIS ALT1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdx2P43241 Lurap1l-201ENSMUST00000055922 3066 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdx2P43241 Sema4c-203ENSMUST00000191677 3779 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
Cdx2P43241 Cul7-201ENSMUST00000043464 5530 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdx2P43241 Fndc7-201ENSMUST00000053065 3009 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdx2P43241 Timm10-202ENSMUST00000111631 564 ntAPPRIS P1 TSL 3 BASIC12.88□□□□□ -0.35
Cdx2P43241 Fam71f2-201ENSMUST00000115286 1180 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdx2P43241 Cdkn1a-202ENSMUST00000119901 748 ntAPPRIS P1 TSL 2 BASIC12.88□□□□□ -0.35
Cdx2P43241 Gm13786-201ENSMUST00000122371 333 ntBASIC12.88□□□□□ -0.35
Cdx2P43241 C87198-201ENSMUST00000173553 1045 ntTSL 3 BASIC12.88□□□□□ -0.35
Cdx2P43241 Gm7895-201ENSMUST00000187459 1173 ntBASIC12.88□□□□□ -0.35
Cdx2P43241 Gm29199-201ENSMUST00000187766 775 ntBASIC12.88□□□□□ -0.35
Cdx2P43241 Gm33056-201ENSMUST00000213234 1120 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Cdx2P43241 Tsc22d4-201ENSMUST00000031738 1043 ntTSL 3 BASIC12.88□□□□□ -0.35
Cdx2P43241 Olfr12-201ENSMUST00000081274 1121 ntAPPRIS P1 BASIC12.88□□□□□ -0.35
Cdx2P43241 Pdcd6-203ENSMUST00000222759 1376 ntAPPRIS ALT1 TSL 2 BASIC12.88□□□□□ -0.35
Cdx2P43241 Wfdc1-201ENSMUST00000024107 1371 ntAPPRIS P2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdx2P43241 Mfsd4b5-205ENSMUST00000170579 1554 ntAPPRIS P1 TSL 2 BASIC12.88□□□□□ -0.35
Cdx2P43241 Kcnj3-203ENSMUST00000112633 1679 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdx2P43241 Kif1c-201ENSMUST00000072187 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdx2P43241 Ddi2-201ENSMUST00000102484 9553 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdx2P43241 4930579G24Rik-201ENSMUST00000029388 1970 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdx2P43241 Kdm8-201ENSMUST00000033010 2389 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdx2P43241 Gm17108-201ENSMUST00000168625 2877 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Cdx2P43241 Senp6-202ENSMUST00000164859 3853 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdx2P43241 Dlgap1-211ENSMUST00000148486 5276 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdx2P43241 Stag1-206ENSMUST00000129269 6186 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdx2P43241 Crb2-201ENSMUST00000050372 6372 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
Cdx2P43241 Itfg1-201ENSMUST00000034140 3306 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdx2P43241 Kdm7a-201ENSMUST00000002305 9566 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdx2P43241 Smarce1-201ENSMUST00000103133 2919 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdx2P43241 Gm4793-201ENSMUST00000067468 2616 ntTSL 2 BASIC12.88□□□□□ -0.35
Cdx2P43241 Slc31a2-201ENSMUST00000084530 1820 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdx2P43241 Map2k7-203ENSMUST00000110994 1600 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Cdx2P43241 7420426K07Rik-201ENSMUST00000098460 1504 ntAPPRIS P1 BASIC12.88□□□□□ -0.35
Cdx2P43241 Zhx3-203ENSMUST00000109460 4480 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdx2P43241 R3hdm2-212ENSMUST00000166820 4281 ntAPPRIS P2 TSL 5 BASIC12.88□□□□□ -0.35
Cdx2P43241 Dlx5-202ENSMUST00000142635 1324 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Cdx2P43241 Erbb2-201ENSMUST00000058295 5012 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cdx2P43241 Ctdp1-201ENSMUST00000036229 3713 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cdx2P43241 Ccdc157-202ENSMUST00000101626 5153 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cdx2P43241 Traf1-201ENSMUST00000028234 2069 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
Cdx2P43241 9330182L06Rik-202ENSMUST00000115348 3403 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cdx2P43241 Pnkd-201ENSMUST00000027370 2937 ntAPPRIS P2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cdx2P43241 Sugp2-214ENSMUST00000164403 4099 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cdx2P43241 Hs3st1-202ENSMUST00000117944 1686 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cdx2P43241 Eomes-201ENSMUST00000035020 3560 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cdx2P43241 Nab1-204ENSMUST00000170269 1371 ntTSL 5 BASIC12.87□□□□□ -0.35
Cdx2P43241 Fgd1-201ENSMUST00000026296 4001 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cdx2P43241 Serpinh1-201ENSMUST00000094154 2215 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cdx2P43241 Tomm5-204ENSMUST00000107810 639 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cdx2P43241 Gm15370-201ENSMUST00000117158 253 ntBASIC12.87□□□□□ -0.35
Cdx2P43241 Rhox7-ps1-201ENSMUST00000117595 806 ntBASIC12.87□□□□□ -0.35
Cdx2P43241 Gm8805-201ENSMUST00000117848 313 ntBASIC12.87□□□□□ -0.35
Cdx2P43241 Gm5637-201ENSMUST00000153890 1119 ntBASIC12.87□□□□□ -0.35
Cdx2P43241 Gm16570-201ENSMUST00000161951 436 ntBASIC12.87□□□□□ -0.35
Cdx2P43241 Gm38161-201ENSMUST00000195344 576 ntTSL 2 BASIC12.87□□□□□ -0.35
Cdx2P43241 Gm43714-201ENSMUST00000198351 1204 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Cdx2P43241 1810059H22Rik-208ENSMUST00000204941 642 ntTSL 2 BASIC12.87□□□□□ -0.35
Cdx2P43241 Gm45881-201ENSMUST00000210659 517 ntTSL 5 BASIC12.87□□□□□ -0.35
Cdx2P43241 Gdf3-201ENSMUST00000032211 2125 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cdx2P43241 Ccs-201ENSMUST00000037246 1057 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cdx2P43241 Gm12166-201ENSMUST00000093169 958 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
Cdx2P43241 Oscar-202ENSMUST00000108645 1829 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cdx2P43241 Oscar-201ENSMUST00000039507 1823 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cdx2P43241 Mff-201ENSMUST00000073025 1706 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Cdx2P43241 Itga8-201ENSMUST00000028106 5812 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cdx2P43241 Fzd6-202ENSMUST00000179165 4325 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cdx2P43241 Rnps1-202ENSMUST00000115371 1617 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Cdx2P43241 4933431E20Rik-209ENSMUST00000146337 1636 ntTSL 5 BASIC12.87□□□□□ -0.35
Cdx2P43241 Pigg-203ENSMUST00000119014 4573 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
Cdx2P43241 Tmc8-202ENSMUST00000106334 2644 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cdx2P43241 Sox5-202ENSMUST00000077160 2526 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Cdx2P43241 Lpar1-201ENSMUST00000055018 3512 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cdx2P43241 Aurka-203ENSMUST00000109140 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cdx2P43241 Cacng2-201ENSMUST00000019290 5510 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cdx2P43241 Eif4g1-201ENSMUST00000044783 5444 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cdx2P43241 Foxj3-201ENSMUST00000044564 4789 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
Cdx2P43241 Trmt1-205ENSMUST00000125370 2114 ntAPPRIS ALT2 TSL 5 BASIC12.86□□□□□ -0.35
Retrieved 100 of 76,532 protein–RNA pairs in 40.8 ms