Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Pnpla2-203ENSMUST00000164016 2625 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Col1a1P11087 Elovl3-201ENSMUST00000043739 1494 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Col1a1P11087 Ets1-201ENSMUST00000034534 5080 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Col1a1P11087 Slc2a6-201ENSMUST00000045702 2138 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Col1a1P11087 Gm28590-201ENSMUST00000185679 1609 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Col1a1P11087 Mettl17-201ENSMUST00000047899 1623 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col1a1P11087 Trappc10-201ENSMUST00000000384 5047 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col1a1P11087 Tomt-202ENSMUST00000106970 1354 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col1a1P11087 Lrrfip2-214ENSMUST00000217117 1363 ntTSL 5 BASIC15.73■□□□□ 0.11
Col1a1P11087 4833439L19Rik-201ENSMUST00000026989 2727 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col1a1P11087 Gpihbp1-203ENSMUST00000189874 1652 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Col1a1P11087 Rbm3-202ENSMUST00000115615 1183 ntAPPRIS ALT1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col1a1P11087 Rbm3-203ENSMUST00000115616 1225 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col1a1P11087 Serf1-203ENSMUST00000132053 516 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Col1a1P11087 Gm13850-201ENSMUST00000140465 623 ntTSL 3 BASIC15.73■□□□□ 0.11
Col1a1P11087 9330198N18Rik-201ENSMUST00000146702 1247 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Col1a1P11087 Fbxw4-203ENSMUST00000160003 387 ntTSL 3 BASIC15.73■□□□□ 0.11
Col1a1P11087 Gm29856-201ENSMUST00000191905 1257 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Col1a1P11087 Gm38317-201ENSMUST00000195564 343 ntBASIC15.73■□□□□ 0.11
Col1a1P11087 Nit2-201ENSMUST00000023432 1280 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col1a1P11087 Fabp4-201ENSMUST00000029041 896 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col1a1P11087 Psma7-201ENSMUST00000029082 914 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col1a1P11087 Pxdn-201ENSMUST00000118321 2698 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Col1a1P11087 Etnk2-203ENSMUST00000135222 2297 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col1a1P11087 Evl-203ENSMUST00000109854 1870 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col1a1P11087 Marveld2-203ENSMUST00000168772 1888 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
Col1a1P11087 Tsta3-201ENSMUST00000023231 1311 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col1a1P11087 Nek3-201ENSMUST00000033865 2021 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col1a1P11087 Gm10782-202ENSMUST00000223775 1480 ntBASIC15.73■□□□□ 0.11
Col1a1P11087 Pja1-203ENSMUST00000113792 3038 ntAPPRIS P4 TSL 5 BASIC15.73■□□□□ 0.11
Col1a1P11087 E2f3-203ENSMUST00000221536 4597 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col1a1P11087 E2f3-204ENSMUST00000222730 4579 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col1a1P11087 Grn-201ENSMUST00000049460 2340 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col1a1P11087 Rabep1-201ENSMUST00000076270 5408 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col1a1P11087 Rfx5-201ENSMUST00000029772 4189 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col1a1P11087 Pcdha7-201ENSMUST00000192631 5337 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col1a1P11087 Fam83g-202ENSMUST00000093019 4778 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col1a1P11087 Anks1-202ENSMUST00000088027 6781 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col1a1P11087 Wbscr25-202ENSMUST00000148729 2075 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Col1a1P11087 H2-Q6-202ENSMUST00000174699 2085 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
Col1a1P11087 Avl9-201ENSMUST00000031805 6670 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col1a1P11087 Ccdc117-201ENSMUST00000020776 3372 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col1a1P11087 Lcmt1-201ENSMUST00000033025 1369 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col1a1P11087 Exosc2-201ENSMUST00000038474 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col1a1P11087 Gse1-202ENSMUST00000118136 4492 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col1a1P11087 Atxn7-201ENSMUST00000022257 6853 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Col1a1P11087 Zfp318-204ENSMUST00000138127 3936 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
Col1a1P11087 Gm12539-201ENSMUST00000121549 1098 ntBASIC15.72■□□□□ 0.11
Col1a1P11087 Cpped1-203ENSMUST00000121750 2614 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Col1a1P11087 Eif4e1b-204ENSMUST00000132005 706 ntTSL 2 BASIC15.72■□□□□ 0.11
Col1a1P11087 Gm22902-201ENSMUST00000158488 302 ntBASIC15.72■□□□□ 0.11
Col1a1P11087 Spata3-211ENSMUST00000159876 760 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
Col1a1P11087 Tmem40-205ENSMUST00000166254 811 ntAPPRIS P3 TSL 5 BASIC15.72■□□□□ 0.11
Col1a1P11087 Dleu2-205ENSMUST00000182325 463 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Col1a1P11087 Dleu2-212ENSMUST00000183079 535 ntTSL 3 BASIC15.72■□□□□ 0.11
Col1a1P11087 Nkx2-2os-202ENSMUST00000184407 458 ntBASIC15.72■□□□□ 0.11
Col1a1P11087 Gm31256-201ENSMUST00000194705 506 ntBASIC15.72■□□□□ 0.11
Col1a1P11087 AC126253.1-202ENSMUST00000226732 835 ntBASIC15.72■□□□□ 0.11
Col1a1P11087 2310002L09Rik-201ENSMUST00000030101 958 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
Col1a1P11087 Cdt1-201ENSMUST00000006760 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Col1a1P11087 Olfr1423-201ENSMUST00000087831 933 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
Col1a1P11087 Pelp1-201ENSMUST00000019065 3435 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Col1a1P11087 Ispd-202ENSMUST00000220519 3122 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Col1a1P11087 Ppp4r3a-202ENSMUST00000163095 4083 ntTSL 5 BASIC15.72■□□□□ 0.11
Col1a1P11087 Itfg1-201ENSMUST00000034140 3306 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Col1a1P11087 Itsn1-203ENSMUST00000095909 6103 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Col1a1P11087 Prg4-207ENSMUST00000162367 1480 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Col1a1P11087 Ado-201ENSMUST00000075686 4445 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
Col1a1P11087 Gm9333-201ENSMUST00000205452 1323 ntBASIC15.72■□□□□ 0.11
Col1a1P11087 Aqp11-205ENSMUST00000206389 3737 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Col1a1P11087 Skp2-203ENSMUST00000190131 1819 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Col1a1P11087 Camkk2-201ENSMUST00000111668 4861 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Col1a1P11087 Hp1bp3-202ENSMUST00000097836 3113 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Col1a1P11087 Gria4-203ENSMUST00000163309 2338 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Col1a1P11087 Kifc5c-ps-201ENSMUST00000179040 1530 ntBASIC15.72■□□□□ 0.11
Col1a1P11087 Ap4b1-202ENSMUST00000076599 2692 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Col1a1P11087 Ythdf3-203ENSMUST00000191774 3196 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Col1a1P11087 Smarcd2-203ENSMUST00000106843 2548 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Col1a1P11087 Arih1-207ENSMUST00000171975 6971 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Col1a1P11087 Zfp57-211ENSMUST00000174524 1747 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
Col1a1P11087 AC139350.1-201ENSMUST00000227064 1594 ntBASIC15.72■□□□□ 0.11
Col1a1P11087 Pir-201ENSMUST00000033749 1599 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Col1a1P11087 Hcrtr1-202ENSMUST00000119423 2439 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
Col1a1P11087 Fam53b-203ENSMUST00000097999 5465 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Col1a1P11087 Gm4909-201ENSMUST00000118749 794 ntBASIC15.71■□□□□ 0.11
Col1a1P11087 Tnfrsf18-203ENSMUST00000122001 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Col1a1P11087 Endov-204ENSMUST00000129327 1184 ntTSL 5 BASIC15.71■□□□□ 0.11
Col1a1P11087 Gm44172-201ENSMUST00000203903 1235 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Col1a1P11087 Calca-204ENSMUST00000205714 416 ntTSL 2 BASIC15.71■□□□□ 0.11
Col1a1P11087 Gm18212-201ENSMUST00000211678 889 ntBASIC15.71■□□□□ 0.11
Col1a1P11087 Tmem108-206ENSMUST00000215136 724 ntTSL 3 BASIC15.71■□□□□ 0.11
Col1a1P11087 AI463170-204ENSMUST00000220157 447 ntTSL 3 BASIC15.71■□□□□ 0.11
Col1a1P11087 Nmral1-201ENSMUST00000074970 1155 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Col1a1P11087 Lrmda-201ENSMUST00000075639 908 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Col1a1P11087 Pten-201ENSMUST00000013807 8292 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Col1a1P11087 Tmem143-203ENSMUST00000209350 2466 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Col1a1P11087 Ubqln1-201ENSMUST00000058735 3686 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Col1a1P11087 Wac-216ENSMUST00000171486 1608 ntTSL 5 BASIC15.71■□□□□ 0.11
Col1a1P11087 Rfx7-203ENSMUST00000183372 1457 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Col1a1P11087 Tekt2-201ENSMUST00000030658 1492 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Retrieved 100 of 76,532 protein–RNA pairs in 46.8 ms