Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Rspry1-207ENSMUST00000212729 2800 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Hoxd3P09027 Cchcr1-202ENSMUST00000164242 2656 ntAPPRIS P2 TSL 1 (best) BASIC10.67□□□□□ -0.7
Hoxd3P09027 Tcf4-253ENSMUST00000202610 1959 ntTSL 5 BASIC10.67□□□□□ -0.7
Hoxd3P09027 AW822073-202ENSMUST00000204003 1959 ntAPPRIS P1 BASIC10.67□□□□□ -0.7
Hoxd3P09027 Ubc-202ENSMUST00000136312 2618 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Hoxd3P09027 Mvk-202ENSMUST00000112239 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC10.67□□□□□ -0.7
Hoxd3P09027 Kdm5b-201ENSMUST00000047714 8714 ntAPPRIS P2 TSL 1 (best) BASIC10.67□□□□□ -0.7
Hoxd3P09027 Atp2a3-202ENSMUST00000108484 4467 ntAPPRIS ALT2 TSL 5 BASIC10.67□□□□□ -0.7
Hoxd3P09027 Gm5797-201ENSMUST00000100886 997 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Hoxd3P09027 Gm3149-201ENSMUST00000112779 997 ntAPPRIS ALT2 TSL 5 BASIC10.67□□□□□ -0.7
Hoxd3P09027 Sec11a-202ENSMUST00000117383 1094 ntTSL 2 BASIC10.67□□□□□ -0.7
Hoxd3P09027 Defa-ps4-201ENSMUST00000118021 183 ntBASIC10.67□□□□□ -0.7
Hoxd3P09027 C430049B03Rik-201ENSMUST00000129764 868 ntTSL 3 BASIC10.67□□□□□ -0.7
Hoxd3P09027 Gm11723-201ENSMUST00000155505 466 ntTSL 3 BASIC10.67□□□□□ -0.7
Hoxd3P09027 Gm17019-201ENSMUST00000167908 1162 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Hoxd3P09027 Gm8362-202ENSMUST00000170673 997 ntAPPRIS ALT2 TSL 5 BASIC10.67□□□□□ -0.7
Hoxd3P09027 Rab10os-207ENSMUST00000179924 823 ntTSL 5 BASIC10.67□□□□□ -0.7
Hoxd3P09027 Gm26812-202ENSMUST00000181776 599 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Hoxd3P09027 Gm27772-201ENSMUST00000184900 187 ntBASIC10.67□□□□□ -0.7
Hoxd3P09027 Gm29417-201ENSMUST00000188160 571 ntTSL 5 BASIC10.67□□□□□ -0.7
Hoxd3P09027 Gm7558-201ENSMUST00000193221 1165 ntBASIC10.67□□□□□ -0.7
Hoxd3P09027 Gm43066-201ENSMUST00000199589 1260 ntBASIC10.67□□□□□ -0.7
Hoxd3P09027 Gm18307-201ENSMUST00000206864 949 ntBASIC10.67□□□□□ -0.7
Hoxd3P09027 Gm32926-202ENSMUST00000215162 1176 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Hoxd3P09027 Isca2-201ENSMUST00000021667 883 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Hoxd3P09027 Gm4129-201ENSMUST00000220083 625 ntTSL 3 BASIC10.67□□□□□ -0.7
Hoxd3P09027 Ifitm3-201ENSMUST00000026565 678 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Hoxd3P09027 Dnmt3b-204ENSMUST00000088976 4130 ntAPPRIS ALT2 TSL 1 (best) BASIC10.67□□□□□ -0.7
Hoxd3P09027 Bpifa6-201ENSMUST00000109753 1572 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Hoxd3P09027 Abhd3-202ENSMUST00000117726 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC10.67□□□□□ -0.7
Hoxd3P09027 Nt5c2-203ENSMUST00000172239 3148 ntTSL 5 BASIC10.67□□□□□ -0.7
Hoxd3P09027 Fam46a-201ENSMUST00000034802 5479 ntAPPRIS P3 TSL 3 BASIC10.67□□□□□ -0.7
Hoxd3P09027 1700029J07Rik-201ENSMUST00000095323 2740 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Hoxd3P09027 Gm26788-201ENSMUST00000181692 1750 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Hoxd3P09027 Tmem184a-201ENSMUST00000044002 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC10.67□□□□□ -0.7
Hoxd3P09027 Gm29358-201ENSMUST00000186510 1734 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Hoxd3P09027 Notch1-201ENSMUST00000028288 9488 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Hoxd3P09027 Plekhg2-202ENSMUST00000119990 4880 ntAPPRIS ALT2 TSL 1 (best) BASIC10.67□□□□□ -0.7
Hoxd3P09027 Cldn9-201ENSMUST00000085989 1435 ntAPPRIS P1 BASIC10.67□□□□□ -0.7
Hoxd3P09027 Gm38577-201ENSMUST00000221531 4545 ntBASIC10.66□□□□□ -0.7
Hoxd3P09027 Srsf10-204ENSMUST00000105853 3058 ntAPPRIS P3 TSL 1 (best) BASIC10.66□□□□□ -0.7
Hoxd3P09027 Repin1-204ENSMUST00000135151 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC10.66□□□□□ -0.7
Hoxd3P09027 Morn1-201ENSMUST00000030915 1659 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Hoxd3P09027 Zfp346-201ENSMUST00000021937 3333 ntAPPRIS P2 TSL 1 (best) BASIC10.66□□□□□ -0.7
Hoxd3P09027 Plekhn1-201ENSMUST00000105569 3014 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Hoxd3P09027 Adm-201ENSMUST00000033054 1390 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Hoxd3P09027 Eif3j1-201ENSMUST00000028668 5413 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Hoxd3P09027 Gm38037-201ENSMUST00000192600 1624 ntBASIC10.66□□□□□ -0.7
Hoxd3P09027 Ap4b1-202ENSMUST00000076599 2692 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Hoxd3P09027 Spg20-204ENSMUST00000118118 3981 ntAPPRIS P3 TSL 1 (best) BASIC10.66□□□□□ -0.7
Hoxd3P09027 Dhrs3-207ENSMUST00000171001 1349 ntTSL 5 BASIC10.66□□□□□ -0.7
Hoxd3P09027 Gdf10-201ENSMUST00000168727 5210 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Hoxd3P09027 Mrpl58-209ENSMUST00000153983 2596 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Hoxd3P09027 Mir698-201ENSMUST00000102164 109 ntBASIC10.66□□□□□ -0.7
Hoxd3P09027 Mul1-203ENSMUST00000105815 473 ntTSL 3 BASIC10.66□□□□□ -0.7
Hoxd3P09027 1700001C02Rik-203ENSMUST00000127815 660 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
Hoxd3P09027 Gm12718-202ENSMUST00000156144 660 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
Hoxd3P09027 Zfp414-204ENSMUST00000166627 1211 ntAPPRIS ALT2 TSL 1 (best) BASIC10.66□□□□□ -0.7
Hoxd3P09027 4930478K11Rik-201ENSMUST00000181875 715 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
Hoxd3P09027 Gm20822-202ENSMUST00000188422 1229 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Hoxd3P09027 Gm20828-202ENSMUST00000190516 1229 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Hoxd3P09027 Gm42921-201ENSMUST00000196670 655 ntTSL 2 BASIC10.66□□□□□ -0.7
Hoxd3P09027 Gm43049-202ENSMUST00000198942 559 ntTSL 2 BASIC10.66□□□□□ -0.7
Hoxd3P09027 Blvra-201ENSMUST00000002064 1160 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Hoxd3P09027 Cplx3-202ENSMUST00000215487 594 ntTSL 3 BASIC10.66□□□□□ -0.7
Hoxd3P09027 Ndufs6-201ENSMUST00000022097 568 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Hoxd3P09027 AC102569.1-204ENSMUST00000222816 793 ntTSL 3 BASIC10.66□□□□□ -0.7
Hoxd3P09027 Gm7745-202ENSMUST00000222914 567 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
Hoxd3P09027 Tmem219-201ENSMUST00000032926 941 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Hoxd3P09027 Nupr1-201ENSMUST00000032961 829 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Hoxd3P09027 Zfp414-201ENSMUST00000073570 1197 ntAPPRIS P2 TSL 1 (best) BASIC10.66□□□□□ -0.7
Hoxd3P09027 Cacna2d1-202ENSMUST00000078272 7311 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
Hoxd3P09027 Zbtb4-202ENSMUST00000108639 7811 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Hoxd3P09027 Slc35e2-202ENSMUST00000105608 6291 ntAPPRIS P1 TSL 5 BASIC10.66□□□□□ -0.7
Hoxd3P09027 Adgrb2-206ENSMUST00000106018 4470 ntAPPRIS ALT2 TSL 5 BASIC10.66□□□□□ -0.7
Hoxd3P09027 Ppt2-209ENSMUST00000171121 1710 ntAPPRIS P1 TSL 5 BASIC10.66□□□□□ -0.7
Hoxd3P09027 Syce1-201ENSMUST00000026553 1460 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Hoxd3P09027 Gm2115-201ENSMUST00000180387 7055 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Hoxd3P09027 Racgap1-201ENSMUST00000023756 2933 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Hoxd3P09027 Brix1-201ENSMUST00000022855 2664 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Hoxd3P09027 Atp2b3-201ENSMUST00000033744 3894 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
Hoxd3P09027 Arhgap28-201ENSMUST00000024840 5322 ntAPPRIS P2 TSL 1 (best) BASIC10.66□□□□□ -0.7
Hoxd3P09027 Fam19a4-201ENSMUST00000089295 2190 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Hoxd3P09027 Gm38102-201ENSMUST00000192791 1935 ntBASIC10.66□□□□□ -0.7
Hoxd3P09027 Glmn-202ENSMUST00000082121 1945 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Hoxd3P09027 Il11-201ENSMUST00000094892 1949 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Hoxd3P09027 Taf7l-201ENSMUST00000009740 1933 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Hoxd3P09027 Fn1-213ENSMUST00000188674 7680 ntAPPRIS ALT2 TSL 1 (best) BASIC10.66□□□□□ -0.7
Hoxd3P09027 Fn1-217ENSMUST00000190780 7694 ntAPPRIS ALT2 TSL 1 (best) BASIC10.66□□□□□ -0.7
Hoxd3P09027 Ccnf-201ENSMUST00000115390 3099 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Hoxd3P09027 4921514A10Rik-201ENSMUST00000181450 2114 ntTSL 5 BASIC10.66□□□□□ -0.7
Hoxd3P09027 Gm2762-202ENSMUST00000201517 2339 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
Hoxd3P09027 Ptpn11-202ENSMUST00000100770 5599 ntAPPRIS ALT1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Hoxd3P09027 Tmem131l-202ENSMUST00000191758 5555 ntAPPRIS P2 TSL 1 (best) BASIC10.66□□□□□ -0.7
Hoxd3P09027 Vegfa-202ENSMUST00000071648 3451 ntAPPRIS ALT2 TSL 1 (best) BASIC10.66□□□□□ -0.7
Hoxd3P09027 Map2k6-201ENSMUST00000020949 2068 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Hoxd3P09027 Bmp4-201ENSMUST00000074077 2064 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Hoxd3P09027 Ilf2-201ENSMUST00000001042 2027 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Hoxd3P09027 Prkcb-202ENSMUST00000064989 2911 ntAPPRIS P3 TSL 1 (best) BASIC10.65□□□□□ -0.7
Hoxd3P09027 Taok2-201ENSMUST00000071268 4720 ntAPPRIS ALT2 TSL 1 (best) BASIC10.65□□□□□ -0.7
Retrieved 100 of 76,532 protein–RNA pairs in 37.2 ms