Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Nr2f2-201ENSMUST00000032768 4222 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Trim3Q9R1R2 Ccdc106-201ENSMUST00000045543 1534 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Trim3Q9R1R2 Parp16-202ENSMUST00000213396 2518 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Trim3Q9R1R2 Pxdn-202ENSMUST00000122328 6614 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Trim3Q9R1R2 1700113H08Rik-201ENSMUST00000169849 1332 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
Trim3Q9R1R2 Tmem51os1-204ENSMUST00000153023 3440 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Trim3Q9R1R2 Bach2-202ENSMUST00000108180 8882 ntAPPRIS P2 TSL 5 BASIC12.86□□□□□ -0.35
Trim3Q9R1R2 Dnm1-201ENSMUST00000078352 3246 ntAPPRIS P2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Trim3Q9R1R2 Slfn2-201ENSMUST00000038038 1664 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Trim3Q9R1R2 Tmem163-205ENSMUST00000185560 3488 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Trim3Q9R1R2 Sema4b-201ENSMUST00000032754 3949 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Trim3Q9R1R2 Gm16685-201ENSMUST00000181286 1592 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Trim3Q9R1R2 Tbc1d16-201ENSMUST00000036113 6986 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
Trim3Q9R1R2 Plekhg2-202ENSMUST00000119990 4880 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Trim3Q9R1R2 Cad-206ENSMUST00000201838 3153 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Trim3Q9R1R2 Gm40765-201ENSMUST00000218612 1469 ntTSL 5 BASIC12.86□□□□□ -0.35
Trim3Q9R1R2 Taf1a-201ENSMUST00000097043 1472 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
Trim3Q9R1R2 Sh3bp5-202ENSMUST00000100730 2633 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Trim3Q9R1R2 Btrc-201ENSMUST00000065601 2978 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
Trim3Q9R1R2 Xrcc3-201ENSMUST00000021715 2422 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Trim3Q9R1R2 Rph3al-203ENSMUST00000108420 695 ntTSL 3 BASIC12.86□□□□□ -0.35
Trim3Q9R1R2 Apoo-203ENSMUST00000113897 1218 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Trim3Q9R1R2 Gm4875-201ENSMUST00000118257 786 ntBASIC12.86□□□□□ -0.35
Trim3Q9R1R2 Dancr-202ENSMUST00000120364 575 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Trim3Q9R1R2 Gm7820-201ENSMUST00000121012 1052 ntBASIC12.86□□□□□ -0.35
Trim3Q9R1R2 1700045H11Rik-201ENSMUST00000128056 593 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Trim3Q9R1R2 Vps53-204ENSMUST00000129256 650 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Trim3Q9R1R2 Tmem109-207ENSMUST00000147699 1096 ntTSL 2 BASIC12.86□□□□□ -0.35
Trim3Q9R1R2 Gm5108-201ENSMUST00000177891 543 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Trim3Q9R1R2 Gm27437-201ENSMUST00000183429 107 ntBASIC12.86□□□□□ -0.35
Trim3Q9R1R2 Gm42196-201ENSMUST00000209618 730 ntTSL 5 BASIC12.86□□□□□ -0.35
Trim3Q9R1R2 Gm5626-201ENSMUST00000222151 1058 ntBASIC12.86□□□□□ -0.35
Trim3Q9R1R2 AC238811.1-201ENSMUST00000225302 441 ntBASIC12.86□□□□□ -0.35
Trim3Q9R1R2 Reep6-201ENSMUST00000040081 850 ntTSL 5 BASIC12.86□□□□□ -0.35
Trim3Q9R1R2 Rnf113a1-201ENSMUST00000046433 1223 ntAPPRIS P1 BASIC12.86□□□□□ -0.35
Trim3Q9R1R2 Hist1h2aa-201ENSMUST00000072391 390 ntAPPRIS P1 BASIC12.86□□□□□ -0.35
Trim3Q9R1R2 Kcnip2-203ENSMUST00000086993 1005 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Trim3Q9R1R2 Bnc2-215ENSMUST00000176691 3385 ntAPPRIS P2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Trim3Q9R1R2 Ptbp2-201ENSMUST00000029780 3364 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
Trim3Q9R1R2 Sf3a2-203ENSMUST00000148665 2213 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Trim3Q9R1R2 Gale-201ENSMUST00000102540 1537 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Trim3Q9R1R2 Pnck-201ENSMUST00000002087 1536 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Trim3Q9R1R2 March8-213ENSMUST00000203193 4245 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Trim3Q9R1R2 Rbm47-206ENSMUST00000200775 3180 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
Trim3Q9R1R2 Tcirg1-211ENSMUST00000145791 2729 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Trim3Q9R1R2 AW209491-202ENSMUST00000178289 2035 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Trim3Q9R1R2 Hsph1-201ENSMUST00000074846 3240 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Trim3Q9R1R2 Tnrc6c-201ENSMUST00000026658 8724 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
Trim3Q9R1R2 Folr1-204ENSMUST00000106985 1313 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
Trim3Q9R1R2 Gm45667-201ENSMUST00000210380 1316 ntBASIC12.86□□□□□ -0.35
Trim3Q9R1R2 Prx-203ENSMUST00000108355 5433 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Trim3Q9R1R2 Slc11a2-201ENSMUST00000023774 3025 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
Trim3Q9R1R2 Plxnb2-202ENSMUST00000109331 6377 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
Trim3Q9R1R2 Bhlhb9-204ENSMUST00000180025 2812 ntAPPRIS P1 TSL 2 BASIC12.85□□□□□ -0.35
Trim3Q9R1R2 Pdlim3-203ENSMUST00000210422 1479 ntAPPRIS ALT1 TSL 5 BASIC12.85□□□□□ -0.35
Trim3Q9R1R2 Col6a2-202ENSMUST00000105413 4653 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Trim3Q9R1R2 Pbx2-203ENSMUST00000173328 1990 ntTSL 2 BASIC12.85□□□□□ -0.35
Trim3Q9R1R2 Cacna2d2-204ENSMUST00000166799 3474 ntAPPRIS ALT2 TSL 5 BASIC12.85□□□□□ -0.35
Trim3Q9R1R2 Tyw1-203ENSMUST00000100662 1867 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Trim3Q9R1R2 Fer-202ENSMUST00000038080 2365 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Trim3Q9R1R2 Scarf1-201ENSMUST00000042808 2887 ntAPPRIS P2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Trim3Q9R1R2 Sh2b1-206ENSMUST00000205889 3011 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Trim3Q9R1R2 Paox-201ENSMUST00000026537 4655 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Trim3Q9R1R2 Shank2-203ENSMUST00000105902 8988 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
Trim3Q9R1R2 Fam83e-201ENSMUST00000129507 2908 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Trim3Q9R1R2 Crhr2-201ENSMUST00000003568 2695 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Trim3Q9R1R2 Car4-201ENSMUST00000103194 1256 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Trim3Q9R1R2 Pla2g2e-202ENSMUST00000105803 381 ntTSL 5 BASIC12.85□□□□□ -0.35
Trim3Q9R1R2 Rnd1-203ENSMUST00000120997 856 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Trim3Q9R1R2 Gm12786-201ENSMUST00000129617 644 ntTSL 3 BASIC12.85□□□□□ -0.35
Trim3Q9R1R2 Ilkap-208ENSMUST00000187306 377 ntTSL 5 BASIC12.85□□□□□ -0.35
Trim3Q9R1R2 Arl3-201ENSMUST00000026009 822 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Trim3Q9R1R2 Ramp3-201ENSMUST00000045374 1233 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Trim3Q9R1R2 Ftl1-201ENSMUST00000094434 968 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Trim3Q9R1R2 Hnrnph1-203ENSMUST00000109142 2427 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Trim3Q9R1R2 Usp13-201ENSMUST00000072312 7580 ntAPPRIS P2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Trim3Q9R1R2 Slc52a3-204ENSMUST00000109861 2590 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Trim3Q9R1R2 Pik3ip1-201ENSMUST00000045153 2573 ntAPPRIS P2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Trim3Q9R1R2 Lmo7-201ENSMUST00000100337 6092 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Trim3Q9R1R2 Ltbp2-203ENSMUST00000163189 6470 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Trim3Q9R1R2 Gjb4-202ENSMUST00000106090 1446 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
Trim3Q9R1R2 Gjb4-201ENSMUST00000060419 1445 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Trim3Q9R1R2 Qsox1-202ENSMUST00000111764 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Trim3Q9R1R2 Pcdh19-202ENSMUST00000149154 10289 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
Trim3Q9R1R2 Alx4-202ENSMUST00000111254 7056 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Trim3Q9R1R2 Myh14-203ENSMUST00000107900 6400 ntAPPRIS ALT2 TSL 5 BASIC12.85□□□□□ -0.35
Trim3Q9R1R2 Hdac7-202ENSMUST00000088402 4223 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
Trim3Q9R1R2 Mpl-203ENSMUST00000106375 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Trim3Q9R1R2 Dhrs1-201ENSMUST00000002403 1477 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Trim3Q9R1R2 Mcm9-206ENSMUST00000220007 3513 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Trim3Q9R1R2 Gata2-202ENSMUST00000170089 3135 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trim3Q9R1R2 Lpcat1-201ENSMUST00000022099 3675 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trim3Q9R1R2 Lrrc29-203ENSMUST00000210412 2304 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
Trim3Q9R1R2 Art3-205ENSMUST00000120193 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trim3Q9R1R2 Ccdc171-204ENSMUST00000126429 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trim3Q9R1R2 Esm1-201ENSMUST00000038144 2097 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trim3Q9R1R2 St13-205ENSMUST00000172107 3346 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trim3Q9R1R2 Tgm6-201ENSMUST00000028888 3327 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trim3Q9R1R2 Gm15816-201ENSMUST00000141930 1688 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Trim3Q9R1R2 Gm10406-202ENSMUST00000170738 1955 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
Retrieved 100 of 76,532 protein–RNA pairs in 25.3 ms