Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Dancr-202ENSMUST00000120364 575 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Ddx56Q9D0R4 Rnaseh2a-206ENSMUST00000128972 1141 ntTSL 2 BASIC14.35□□□□□ -0.11
Ddx56Q9D0R4 Fxyd5-208ENSMUST00000161805 1166 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Ddx56Q9D0R4 Tmem33-206ENSMUST00000162543 664 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Ddx56Q9D0R4 Ppt2-202ENSMUST00000166040 1139 ntAPPRIS P1 TSL 3 BASIC14.35□□□□□ -0.11
Ddx56Q9D0R4 Gm24694-201ENSMUST00000180054 110 ntBASIC14.35□□□□□ -0.11
Ddx56Q9D0R4 Gm15294-202ENSMUST00000182079 366 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
Ddx56Q9D0R4 Gpx4-207ENSMUST00000183037 735 ntTSL 2 BASIC14.35□□□□□ -0.11
Ddx56Q9D0R4 Gm27663-201ENSMUST00000184839 110 ntBASIC14.35□□□□□ -0.11
Ddx56Q9D0R4 Gm30906-201ENSMUST00000219578 535 ntTSL 3 BASIC14.35□□□□□ -0.11
Ddx56Q9D0R4 Epb41l2-201ENSMUST00000053748 4385 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Ddx56Q9D0R4 Golim4-208ENSMUST00000167078 2902 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Ddx56Q9D0R4 Kmt2e-202ENSMUST00000115128 7317 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Ddx56Q9D0R4 Chp2-201ENSMUST00000033152 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Ddx56Q9D0R4 Grin1-204ENSMUST00000114310 4276 ntTSL 5 BASIC14.35□□□□□ -0.11
Ddx56Q9D0R4 Gm20632-201ENSMUST00000176760 2427 ntBASIC14.35□□□□□ -0.11
Ddx56Q9D0R4 Atp2a3-204ENSMUST00000108486 4540 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
Ddx56Q9D0R4 Gypc-202ENSMUST00000174000 2072 ntAPPRIS ALT2 TSL 3 BASIC14.35□□□□□ -0.11
Ddx56Q9D0R4 Amz1-201ENSMUST00000060918 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Ddx56Q9D0R4 Agpat4-201ENSMUST00000024594 1915 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Ddx56Q9D0R4 AC139350.1-201ENSMUST00000227064 1594 ntBASIC14.34□□□□□ -0.11
Ddx56Q9D0R4 Cln3-203ENSMUST00000098036 1571 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ddx56Q9D0R4 Atrip-201ENSMUST00000045011 2572 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ddx56Q9D0R4 Fktn-204ENSMUST00000221657 6241 ntTSL 5 BASIC14.34□□□□□ -0.11
Ddx56Q9D0R4 Emc7-201ENSMUST00000069747 5826 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ddx56Q9D0R4 Spin1-201ENSMUST00000095797 4434 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ddx56Q9D0R4 Cabp7-201ENSMUST00000009219 2628 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ddx56Q9D0R4 Shmt2-206ENSMUST00000219239 2238 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ddx56Q9D0R4 Ugt1a5-201ENSMUST00000097659 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ddx56Q9D0R4 Ephx2-201ENSMUST00000070515 2035 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ddx56Q9D0R4 Sipa1-201ENSMUST00000071857 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ddx56Q9D0R4 Setd1b-204ENSMUST00000163030 8857 ntAPPRIS P2 TSL 5 BASIC14.34□□□□□ -0.11
Ddx56Q9D0R4 AC154262.2-201ENSMUST00000224310 2293 ntBASIC14.34□□□□□ -0.11
Ddx56Q9D0R4 Grin3a-202ENSMUST00000093859 7491 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Ddx56Q9D0R4 Syt6-203ENSMUST00000118117 1856 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Ddx56Q9D0R4 Sdha-201ENSMUST00000022062 2900 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ddx56Q9D0R4 H3f3b-202ENSMUST00000106454 2514 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Ddx56Q9D0R4 Zfp683-201ENSMUST00000105884 1471 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Ddx56Q9D0R4 Mbd3-202ENSMUST00000105347 914 ntTSL 2 BASIC14.34□□□□□ -0.11
Ddx56Q9D0R4 Rgs19-203ENSMUST00000108771 1110 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Ddx56Q9D0R4 Rgs19-205ENSMUST00000108776 1216 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ddx56Q9D0R4 Nudt1-203ENSMUST00000110825 599 ntTSL 2 BASIC14.34□□□□□ -0.11
Ddx56Q9D0R4 Adprm-201ENSMUST00000116363 1283 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ddx56Q9D0R4 Ptgr2-205ENSMUST00000135001 1286 ntTSL 5 BASIC14.34□□□□□ -0.11
Ddx56Q9D0R4 Tnni1-205ENSMUST00000148201 1150 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Ddx56Q9D0R4 Tnni1-206ENSMUST00000152075 1038 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Ddx56Q9D0R4 Tnni1-207ENSMUST00000152208 1105 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Ddx56Q9D0R4 Selenoh-205ENSMUST00000189636 499 ntAPPRIS ALT2 TSL 3 BASIC14.34□□□□□ -0.11
Ddx56Q9D0R4 Gm15411-202ENSMUST00000201913 668 ntTSL 3 BASIC14.34□□□□□ -0.11
Ddx56Q9D0R4 Aprt-209ENSMUST00000213062 560 ntTSL 2 BASIC14.34□□□□□ -0.11
Ddx56Q9D0R4 Dzip1-202ENSMUST00000047208 4476 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Ddx56Q9D0R4 Lrfn2-201ENSMUST00000046254 3202 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ddx56Q9D0R4 AC161252.3-201ENSMUST00000225465 1549 ntBASIC14.34□□□□□ -0.11
Ddx56Q9D0R4 Slc25a14-201ENSMUST00000033431 1760 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ddx56Q9D0R4 Opa1-206ENSMUST00000160597 6230 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ddx56Q9D0R4 Plcb2-202ENSMUST00000102524 5145 ntAPPRIS P3 TSL 2 BASIC14.34□□□□□ -0.11
Ddx56Q9D0R4 Hlcs-202ENSMUST00000163193 5371 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ddx56Q9D0R4 B3gat1-204ENSMUST00000160899 3801 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Ddx56Q9D0R4 Gm9946-202ENSMUST00000162741 1580 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Ddx56Q9D0R4 Zfp219-201ENSMUST00000067549 2933 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ddx56Q9D0R4 Fbxl19-202ENSMUST00000186116 3641 ntTSL 5 BASIC14.34□□□□□ -0.11
Ddx56Q9D0R4 Fhad1-201ENSMUST00000036701 1366 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Ddx56Q9D0R4 Gpc2-201ENSMUST00000014089 2514 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Ddx56Q9D0R4 Mllt10-203ENSMUST00000114671 5063 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Ddx56Q9D0R4 Gapvd1-202ENSMUST00000102800 8339 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ddx56Q9D0R4 Zfp647-201ENSMUST00000048854 1608 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Ddx56Q9D0R4 Zbtb33-201ENSMUST00000049740 5122 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Ddx56Q9D0R4 Eloa-201ENSMUST00000030427 4708 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Ddx56Q9D0R4 Thap2-202ENSMUST00000218842 4970 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Ddx56Q9D0R4 Tjap1-203ENSMUST00000180283 2368 ntAPPRIS P2 TSL 5 BASIC14.33□□□□□ -0.11
Ddx56Q9D0R4 Cabp4-201ENSMUST00000025761 1431 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Ddx56Q9D0R4 Ubqln2-201ENSMUST00000060714 3344 ntAPPRIS P1 BASIC14.33□□□□□ -0.11
Ddx56Q9D0R4 Mutyh-201ENSMUST00000102699 1654 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Ddx56Q9D0R4 Ell3-202ENSMUST00000116432 1674 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Ddx56Q9D0R4 Slc25a46-201ENSMUST00000060396 4371 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ddx56Q9D0R4 Iqcm-203ENSMUST00000212704 2035 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ddx56Q9D0R4 Gm45799-201ENSMUST00000106785 367 ntAPPRIS ALT2 TSL 3 BASIC14.33□□□□□ -0.12
Ddx56Q9D0R4 Lamtor2-202ENSMUST00000119002 568 ntTSL 2 BASIC14.33□□□□□ -0.12
Ddx56Q9D0R4 Pdpn-202ENSMUST00000119654 762 ntAPPRIS ALT2 TSL 3 BASIC14.33□□□□□ -0.12
Ddx56Q9D0R4 Gm11773-201ENSMUST00000138256 497 ntTSL 2 BASIC14.33□□□□□ -0.12
Ddx56Q9D0R4 Pam16-201ENSMUST00000014445 596 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ddx56Q9D0R4 Ube4bos1-202ENSMUST00000151896 1286 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Ddx56Q9D0R4 Gm20949-201ENSMUST00000206478 952 ntBASIC14.33□□□□□ -0.12
Ddx56Q9D0R4 Lcmt1-204ENSMUST00000206574 1286 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
Ddx56Q9D0R4 Gm33045-202ENSMUST00000210049 975 ntTSL 5 BASIC14.33□□□□□ -0.12
Ddx56Q9D0R4 AC158987.1-201ENSMUST00000214586 961 ntTSL 5 BASIC14.33□□□□□ -0.12
Ddx56Q9D0R4 Tmem179-202ENSMUST00000222836 521 ntTSL 5 BASIC14.33□□□□□ -0.12
Ddx56Q9D0R4 AC139580.1-202ENSMUST00000223574 928 ntBASIC14.33□□□□□ -0.12
Ddx56Q9D0R4 Syce1l-201ENSMUST00000034219 896 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ddx56Q9D0R4 1700018B08Rik-201ENSMUST00000034265 1084 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ddx56Q9D0R4 Wdr83-201ENSMUST00000093357 1238 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ddx56Q9D0R4 Olfr615-201ENSMUST00000098198 942 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
Ddx56Q9D0R4 Tspyl1-201ENSMUST00000061372 3086 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
Ddx56Q9D0R4 Gm4297-201ENSMUST00000119285 2579 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
Ddx56Q9D0R4 Mocs1-204ENSMUST00000173033 2588 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ddx56Q9D0R4 Enox1-201ENSMUST00000022589 3142 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ddx56Q9D0R4 Pik3cd-214ENSMUST00000177654 4765 ntAPPRIS P4 TSL 5 BASIC14.33□□□□□ -0.12
Ddx56Q9D0R4 Ltbp4-201ENSMUST00000038618 5386 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ddx56Q9D0R4 Hoxd3-202ENSMUST00000111982 2413 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ddx56Q9D0R4 Slc4a5-201ENSMUST00000039212 5123 ntAPPRIS P2 TSL 5 BASIC14.33□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 34.3 ms