Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 A430005L14Rik-201ENSMUST00000058393 1098 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Clp1Q99LI9 Cma2-201ENSMUST00000089555 947 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Clp1Q99LI9 Cadps2-204ENSMUST00000115356 3533 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Clp1Q99LI9 Mcrs1-201ENSMUST00000041190 1915 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Clp1Q99LI9 Stx4a-202ENSMUST00000121705 1316 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Clp1Q99LI9 Avpr1a-201ENSMUST00000020323 2670 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Clp1Q99LI9 Rspo4-201ENSMUST00000042217 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Clp1Q99LI9 Top3b-201ENSMUST00000023465 3073 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Clp1Q99LI9 Itga8-201ENSMUST00000028106 5812 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Clp1Q99LI9 Mff-201ENSMUST00000073025 1706 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Clp1Q99LI9 Lrp1-202ENSMUST00000118455 2097 ntTSL 5 BASIC14.32□□□□□ -0.12
Clp1Q99LI9 Ncbp2-201ENSMUST00000023460 2070 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Clp1Q99LI9 Neurod2-201ENSMUST00000041685 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Clp1Q99LI9 Col7a1-201ENSMUST00000026740 9198 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Clp1Q99LI9 Papd7-204ENSMUST00000223344 2118 ntAPPRIS P2 TSL 3 BASIC14.32□□□□□ -0.12
Clp1Q99LI9 Cnbd2-202ENSMUST00000073942 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Clp1Q99LI9 Cep57-201ENSMUST00000034398 2523 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Clp1Q99LI9 Rai2-202ENSMUST00000112338 2165 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Clp1Q99LI9 Oscar-202ENSMUST00000108645 1829 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Clp1Q99LI9 Oscar-201ENSMUST00000039507 1823 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Clp1Q99LI9 Zcwpw2-202ENSMUST00000187329 1469 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Clp1Q99LI9 Ccdc13-202ENSMUST00000135986 2640 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
Clp1Q99LI9 Pef1-202ENSMUST00000118199 1915 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
Clp1Q99LI9 Suv39h2-201ENSMUST00000027956 4327 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Clp1Q99LI9 Cspg5-204ENSMUST00000197850 7868 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
Clp1Q99LI9 Ppp1r3g-201ENSMUST00000132661 2361 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Clp1Q99LI9 Foxo3-203ENSMUST00000105502 6848 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Clp1Q99LI9 Ccnt2-202ENSMUST00000112570 4511 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Clp1Q99LI9 F2r-201ENSMUST00000059193 3336 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Clp1Q99LI9 E2f3-203ENSMUST00000221536 4597 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Clp1Q99LI9 E2f3-204ENSMUST00000222730 4579 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Clp1Q99LI9 Serp1-201ENSMUST00000029385 4611 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Clp1Q99LI9 Gm11637-201ENSMUST00000120601 592 ntBASIC14.31□□□□□ -0.12
Clp1Q99LI9 Gm14381-201ENSMUST00000122105 414 ntBASIC14.31□□□□□ -0.12
Clp1Q99LI9 Gm12749-201ENSMUST00000122138 1159 ntBASIC14.31□□□□□ -0.12
Clp1Q99LI9 2010320O07Rik-201ENSMUST00000160935 525 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Clp1Q99LI9 Ly6g5b-202ENSMUST00000172854 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Clp1Q99LI9 Rpl7a-ps10-201ENSMUST00000190579 798 ntBASIC14.31□□□□□ -0.12
Clp1Q99LI9 Dnajc17-201ENSMUST00000038439 1008 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Clp1Q99LI9 4930442H23Rik-201ENSMUST00000056086 1245 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
Clp1Q99LI9 Mettl5-201ENSMUST00000060447 968 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
Clp1Q99LI9 Gm5129-201ENSMUST00000065372 300 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
Clp1Q99LI9 Gm3695-201ENSMUST00000087222 1009 ntBASIC14.31□□□□□ -0.12
Clp1Q99LI9 Rpl7a-ps3-201ENSMUST00000090170 796 ntBASIC14.31□□□□□ -0.12
Clp1Q99LI9 Rpl7a-ps5-201ENSMUST00000095218 807 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
Clp1Q99LI9 Xylt2-201ENSMUST00000116349 3442 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Clp1Q99LI9 Mlx-203ENSMUST00000107303 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Clp1Q99LI9 Pik3ap1-201ENSMUST00000059672 2615 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Clp1Q99LI9 A330035P11Rik-202ENSMUST00000144926 3074 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Clp1Q99LI9 Pcdha11-202ENSMUST00000115657 5360 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Clp1Q99LI9 Ppp1r18-205ENSMUST00000187690 3185 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Clp1Q99LI9 Mlx-202ENSMUST00000107302 1826 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Clp1Q99LI9 Gabra4-201ENSMUST00000031121 4108 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Clp1Q99LI9 Sybu-201ENSMUST00000090057 3230 ntAPPRIS P4 TSL 1 (best) BASIC14.31□□□□□ -0.12
Clp1Q99LI9 Padi4-201ENSMUST00000026381 2316 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Clp1Q99LI9 2310022A10Rik-204ENSMUST00000187032 1871 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Clp1Q99LI9 Cspg5-201ENSMUST00000035058 3870 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Clp1Q99LI9 Kcnq2-202ENSMUST00000049792 2920 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Clp1Q99LI9 Art3-206ENSMUST00000120416 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Clp1Q99LI9 Ccdc134-201ENSMUST00000089174 2043 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Clp1Q99LI9 Gm37648-201ENSMUST00000192072 2563 ntBASIC14.3□□□□□ -0.12
Clp1Q99LI9 Scarf1-202ENSMUST00000118243 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Clp1Q99LI9 Hck-204ENSMUST00000191431 1575 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
Clp1Q99LI9 Cdr2l-201ENSMUST00000053288 3700 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Clp1Q99LI9 Pax7-201ENSMUST00000030508 5854 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Clp1Q99LI9 Cry2-202ENSMUST00000111278 2160 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Clp1Q99LI9 Farp2-201ENSMUST00000120301 3937 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Clp1Q99LI9 Adam9-202ENSMUST00000084035 3985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Clp1Q99LI9 Slc5a2-202ENSMUST00000118169 2277 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Clp1Q99LI9 Gm28372-201ENSMUST00000188900 1876 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Clp1Q99LI9 Osbpl9-202ENSMUST00000084366 3134 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Clp1Q99LI9 Arhgef1-218ENSMUST00000206508 3195 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Clp1Q99LI9 Derl1-201ENSMUST00000022993 3175 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Clp1Q99LI9 Gm4986-201ENSMUST00000119731 549 ntBASIC14.3□□□□□ -0.12
Clp1Q99LI9 Gm12216-202ENSMUST00000120776 826 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
Clp1Q99LI9 Gm15501-201ENSMUST00000133910 849 ntTSL 3 BASIC14.3□□□□□ -0.12
Clp1Q99LI9 Gm7008-202ENSMUST00000170019 402 ntTSL 2 BASIC14.3□□□□□ -0.12
Clp1Q99LI9 Lsm2-207ENSMUST00000173004 870 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Clp1Q99LI9 Gm11523-203ENSMUST00000184482 802 ntTSL 3 BASIC14.3□□□□□ -0.12
Clp1Q99LI9 Ighv1-62-201ENSMUST00000193406 350 ntBASIC14.3□□□□□ -0.12
Clp1Q99LI9 Gm38161-201ENSMUST00000195344 576 ntTSL 2 BASIC14.3□□□□□ -0.12
Clp1Q99LI9 AC148335.1-201ENSMUST00000218778 818 ntTSL 5 BASIC14.3□□□□□ -0.12
Clp1Q99LI9 AC132384.14-201ENSMUST00000219346 1147 ntBASIC14.3□□□□□ -0.12
Clp1Q99LI9 CT573034.1-201ENSMUST00000222983 313 ntBASIC14.3□□□□□ -0.12
Clp1Q99LI9 Ddit3-201ENSMUST00000026475 890 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Clp1Q99LI9 Olfr983-201ENSMUST00000050996 1050 ntTSL 2 BASIC14.3□□□□□ -0.12
Clp1Q99LI9 Tgif2-201ENSMUST00000073352 2690 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Clp1Q99LI9 Mybl1-201ENSMUST00000088658 4980 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Clp1Q99LI9 AC162938.1-201ENSMUST00000213140 2323 ntBASIC14.3□□□□□ -0.12
Clp1Q99LI9 Gm16425-201ENSMUST00000118143 3130 ntBASIC14.3□□□□□ -0.12
Clp1Q99LI9 Prdx2-203ENSMUST00000109734 1612 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
Clp1Q99LI9 Mdm1-202ENSMUST00000163238 2461 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Clp1Q99LI9 Erbb2-201ENSMUST00000058295 5012 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Clp1Q99LI9 B3gnt7-201ENSMUST00000113306 2582 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Clp1Q99LI9 Ddo-203ENSMUST00000213503 1759 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Clp1Q99LI9 Syn2-201ENSMUST00000009538 2708 ntAPPRIS P4 TSL 1 (best) BASIC14.29□□□□□ -0.12
Clp1Q99LI9 Glipr2-202ENSMUST00000107855 1816 ntTSL 2 BASIC14.29□□□□□ -0.12
Clp1Q99LI9 Avpr2-201ENSMUST00000033765 1812 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Clp1Q99LI9 Cand2-201ENSMUST00000075995 5474 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Clp1Q99LI9 Cul7-201ENSMUST00000043464 5530 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 52.5 ms