Protein–RNA interactions for Protein: Q99K46

Usp11, Ubiquitin carboxyl-terminal hydrolase 11, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp11Q99K46 AC121804.3-201ENSMUST00000223420 295 ntBASIC14.4□□□□□ -0.1
Usp11Q99K46 Zfp146-201ENSMUST00000062181 2029 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Usp11Q99K46 Spag1-201ENSMUST00000047348 3646 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Usp11Q99K46 Hk2-204ENSMUST00000170833 2792 ntTSL 5 BASIC14.4□□□□□ -0.1
Usp11Q99K46 Il11-201ENSMUST00000094892 1949 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Usp11Q99K46 Rusc1-201ENSMUST00000052539 3316 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Usp11Q99K46 Ube2d-ps-205ENSMUST00000142942 1840 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Usp11Q99K46 Eif1ad-201ENSMUST00000025759 2469 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Usp11Q99K46 Foxred2-202ENSMUST00000117725 4347 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Usp11Q99K46 Gm9947-201ENSMUST00000067599 2920 ntBASIC14.4□□□□□ -0.1
Usp11Q99K46 Fip1l1-201ENSMUST00000080164 4673 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
Usp11Q99K46 Hnrnpul1-201ENSMUST00000043765 3354 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Usp11Q99K46 Nfasc-207ENSMUST00000187861 4927 ntTSL 5 BASIC14.4□□□□□ -0.1
Usp11Q99K46 Trim32-202ENSMUST00000107366 3191 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Usp11Q99K46 Krt18-201ENSMUST00000023803 1400 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Usp11Q99K46 Irak2-202ENSMUST00000089022 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Usp11Q99K46 Phgdh-201ENSMUST00000065793 1893 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Usp11Q99K46 Scara5-201ENSMUST00000022610 3794 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Usp11Q99K46 Gm8334-201ENSMUST00000112755 1662 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
Usp11Q99K46 AW209491-202ENSMUST00000178289 2035 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Usp11Q99K46 Chrnd-202ENSMUST00000186373 2949 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Usp11Q99K46 Slc12a4-201ENSMUST00000034370 3811 ntAPPRIS ALT1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Usp11Q99K46 Tspan31-201ENSMUST00000060991 1556 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Usp11Q99K46 Pcdhgc3-201ENSMUST00000076807 4687 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Usp11Q99K46 Acp5-201ENSMUST00000069330 1356 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Usp11Q99K46 A530020G20Rik-202ENSMUST00000181070 3660 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Usp11Q99K46 AC155298.2-201ENSMUST00000225485 6226 ntBASIC14.39□□□□□ -0.11
Usp11Q99K46 Snx13-201ENSMUST00000048519 6231 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Usp11Q99K46 Tmprss9-203ENSMUST00000219817 3581 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
Usp11Q99K46 Trbc1-201ENSMUST00000103291 512 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
Usp11Q99K46 Trbc2-201ENSMUST00000103299 692 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
Usp11Q99K46 Haghl-203ENSMUST00000133071 1128 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Usp11Q99K46 Gm15825-201ENSMUST00000159108 918 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Usp11Q99K46 Gm27321-201ENSMUST00000185021 205 ntBASIC14.39□□□□□ -0.11
Usp11Q99K46 Lsamp-207ENSMUST00000189229 637 ntTSL 3 BASIC14.39□□□□□ -0.11
Usp11Q99K46 Lsamp-210ENSMUST00000191610 1297 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Usp11Q99K46 2610008E11Rik-204ENSMUST00000220220 799 ntTSL 2 BASIC14.39□□□□□ -0.11
Usp11Q99K46 Gm9063-201ENSMUST00000223299 582 ntBASIC14.39□□□□□ -0.11
Usp11Q99K46 AC156016.3-201ENSMUST00000228623 344 ntBASIC14.39□□□□□ -0.11
Usp11Q99K46 Cmtm5-201ENSMUST00000037814 1095 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Usp11Q99K46 Haus1-201ENSMUST00000048192 1004 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Usp11Q99K46 Zswim7-201ENSMUST00000072916 732 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Usp11Q99K46 Obp2a-201ENSMUST00000077667 744 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Usp11Q99K46 Rec114-201ENSMUST00000098674 883 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Usp11Q99K46 Arid4b-202ENSMUST00000110533 3020 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Usp11Q99K46 Igf2-201ENSMUST00000000033 3708 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Usp11Q99K46 Spred3-201ENSMUST00000048923 4056 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Usp11Q99K46 Tbx3-203ENSMUST00000121021 4777 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Usp11Q99K46 Csrnp1-201ENSMUST00000035101 2906 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Usp11Q99K46 Hoxa3-201ENSMUST00000114434 2591 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Usp11Q99K46 Sf3a2-203ENSMUST00000148665 2213 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Usp11Q99K46 Camk2b-208ENSMUST00000109812 1875 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Usp11Q99K46 Gm5320-201ENSMUST00000207163 1519 ntBASIC14.39□□□□□ -0.11
Usp11Q99K46 Bend3-201ENSMUST00000040147 5882 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Usp11Q99K46 Dnaaf1-201ENSMUST00000093100 2821 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Usp11Q99K46 Srsf10-205ENSMUST00000126641 3754 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Usp11Q99K46 Plcd1-203ENSMUST00000214470 2706 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Usp11Q99K46 Vps4b-201ENSMUST00000094646 4633 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Usp11Q99K46 Fn1-211ENSMUST00000187938 7965 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Usp11Q99K46 Ephb3-201ENSMUST00000006112 4185 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Usp11Q99K46 Lzts3-202ENSMUST00000089561 4169 ntAPPRIS P3 TSL 5 BASIC14.39□□□□□ -0.11
Usp11Q99K46 Slc25a25-204ENSMUST00000113308 2643 ntTSL 5 BASIC14.39□□□□□ -0.11
Usp11Q99K46 Ube2g1-201ENSMUST00000021148 3815 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Usp11Q99K46 Sppl2a-201ENSMUST00000028844 5616 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Usp11Q99K46 Mdm1-208ENSMUST00000219087 1318 ntTSL 2 BASIC14.39□□□□□ -0.11
Usp11Q99K46 Tmed5-202ENSMUST00000061203 2194 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Usp11Q99K46 Esyt3-201ENSMUST00000042158 4483 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Usp11Q99K46 Ccne2-202ENSMUST00000108324 2908 ntAPPRIS P4 TSL 1 (best) BASIC14.38□□□□□ -0.11
Usp11Q99K46 Trem1-202ENSMUST00000113251 2077 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Usp11Q99K46 Nfyb-204ENSMUST00000130911 2554 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Usp11Q99K46 Gm40765-201ENSMUST00000218612 1469 ntTSL 5 BASIC14.38□□□□□ -0.11
Usp11Q99K46 Nwd2-201ENSMUST00000159584 8534 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Usp11Q99K46 Cmpk2-201ENSMUST00000020969 3200 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Usp11Q99K46 Arap1-204ENSMUST00000107010 5147 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Usp11Q99K46 AC121801.1-201ENSMUST00000225363 1899 ntBASIC14.38□□□□□ -0.11
Usp11Q99K46 Serhl-201ENSMUST00000078218 1371 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Usp11Q99K46 Umad1-208ENSMUST00000162034 2015 ntAPPRIS ALT2 TSL 3 BASIC14.38□□□□□ -0.11
Usp11Q99K46 Yeats2-201ENSMUST00000090052 5997 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
Usp11Q99K46 Kcnd3-203ENSMUST00000118360 2668 ntAPPRIS P4 TSL 5 BASIC14.38□□□□□ -0.11
Usp11Q99K46 Mrto4-202ENSMUST00000102503 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Usp11Q99K46 Ltc4s-202ENSMUST00000102772 649 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Usp11Q99K46 Rph3al-203ENSMUST00000108420 695 ntTSL 3 BASIC14.38□□□□□ -0.11
Usp11Q99K46 Lcn6-202ENSMUST00000114197 635 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Usp11Q99K46 Lgals3-203ENSMUST00000146468 1072 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Usp11Q99K46 Gm30191-201ENSMUST00000205501 647 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Usp11Q99K46 Gm20949-201ENSMUST00000206478 952 ntBASIC14.38□□□□□ -0.11
Usp11Q99K46 Gm7775-201ENSMUST00000218871 853 ntBASIC14.38□□□□□ -0.11
Usp11Q99K46 Hrasls5-201ENSMUST00000025929 1063 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Usp11Q99K46 Hes5-201ENSMUST00000049621 1273 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Usp11Q99K46 Syce1l-202ENSMUST00000095173 791 ntAPPRIS P4 TSL 1 (best) BASIC14.38□□□□□ -0.11
Usp11Q99K46 Il6ra-201ENSMUST00000029559 3343 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
Usp11Q99K46 Usf1-208ENSMUST00000161241 2167 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Usp11Q99K46 Gramd1b-201ENSMUST00000045682 7488 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Usp11Q99K46 Actn4-201ENSMUST00000068045 3877 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Usp11Q99K46 Fahd1-201ENSMUST00000049642 1407 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
Usp11Q99K46 Smyd1-203ENSMUST00000114188 2064 ntTSL 5 BASIC14.38□□□□□ -0.11
Usp11Q99K46 Bnc2-215ENSMUST00000176691 3385 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Usp11Q99K46 Bptf-203ENSMUST00000106763 12036 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
Usp11Q99K46 Afdn-216ENSMUST00000170827 7338 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
Usp11Q99K46 Esrrb-202ENSMUST00000110203 2363 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 52.2 ms