Protein–RNA interactions for Protein: Q8VC31

Ccdc9, Coiled-coil domain-containing protein 9, mousemouse

Known RBP Predictions only

Length 543 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc9Q8VC31 Kdm5b-201ENSMUST00000047714 8714 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Ccdc9Q8VC31 Kcnj12-203ENSMUST00000108717 2463 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
Ccdc9Q8VC31 Mapk4-201ENSMUST00000091851 4594 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Ccdc9Q8VC31 Pcdhga11-201ENSMUST00000061279 4756 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Ccdc9Q8VC31 Fen1-202ENSMUST00000116542 2100 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Ccdc9Q8VC31 Tcf25-203ENSMUST00000211932 5002 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Ccdc9Q8VC31 Asb3-202ENSMUST00000117883 2509 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Ccdc9Q8VC31 D10Jhu81e-201ENSMUST00000001242 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Ccdc9Q8VC31 Ahsa1-201ENSMUST00000021425 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Ccdc9Q8VC31 Grhl2-201ENSMUST00000022895 4947 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Ccdc9Q8VC31 Lrrc57-202ENSMUST00000102497 1962 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Ccdc9Q8VC31 Pik3cd-206ENSMUST00000122059 4832 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Ccdc9Q8VC31 Kcnma1-212ENSMUST00000188285 4440 ntAPPRIS P4 TSL 1 (best) BASIC16.38■□□□□ 0.21
Ccdc9Q8VC31 Ndc80-201ENSMUST00000024851 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Ccdc9Q8VC31 Slc5a11-207ENSMUST00000167299 2022 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
Ccdc9Q8VC31 Tm6sf2-201ENSMUST00000049197 1418 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
Ccdc9Q8VC31 Sgip1-201ENSMUST00000066824 4305 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Ccdc9Q8VC31 Sgk1-203ENSMUST00000100036 2476 ntTSL 5 BASIC16.38■□□□□ 0.21
Ccdc9Q8VC31 Sgk1-201ENSMUST00000020145 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Ccdc9Q8VC31 Mif4gd-203ENSMUST00000106507 1656 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Ccdc9Q8VC31 Riok1-201ENSMUST00000021866 2738 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Ccdc9Q8VC31 Arfgap1-203ENSMUST00000108860 2326 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Ccdc9Q8VC31 Dhx57-202ENSMUST00000086555 5077 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Ccdc9Q8VC31 Tsc22d1-208ENSMUST00000142683 797 ntTSL 3 BASIC16.38■□□□□ 0.21
Ccdc9Q8VC31 Rbfox2-207ENSMUST00000227533 1041 ntBASIC16.38■□□□□ 0.21
Ccdc9Q8VC31 A930016O22Rik-201ENSMUST00000047020 1214 ntTSL 2 BASIC16.38■□□□□ 0.21
Ccdc9Q8VC31 Csrnp2-201ENSMUST00000061457 4126 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Ccdc9Q8VC31 Trmu-201ENSMUST00000023019 1526 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Ccdc9Q8VC31 1700128E19Rik-201ENSMUST00000134409 2439 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Ccdc9Q8VC31 Cd3d-201ENSMUST00000034602 1617 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Ccdc9Q8VC31 Shc1-201ENSMUST00000039110 3250 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
Ccdc9Q8VC31 Kctd18-210ENSMUST00000164963 2114 ntTSL 5 BASIC16.37■□□□□ 0.21
Ccdc9Q8VC31 Tmod2-208ENSMUST00000215614 1921 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Ccdc9Q8VC31 3830432H09Rik-202ENSMUST00000188909 2414 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Ccdc9Q8VC31 Cyp2s1-201ENSMUST00000043314 2745 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Ccdc9Q8VC31 Hnrnpk-202ENSMUST00000116403 2970 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Ccdc9Q8VC31 Sh3bp5l-201ENSMUST00000073128 2977 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Ccdc9Q8VC31 Igfn1-203ENSMUST00000166193 8989 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Ccdc9Q8VC31 Grsf1-202ENSMUST00000113234 2286 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Ccdc9Q8VC31 Mixl1-201ENSMUST00000027778 2294 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Ccdc9Q8VC31 Gm8344-201ENSMUST00000119813 856 ntBASIC16.37■□□□□ 0.21
Ccdc9Q8VC31 Edf1-201ENSMUST00000015236 722 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Ccdc9Q8VC31 Gm26646-202ENSMUST00000205705 439 ntTSL 5 BASIC16.37■□□□□ 0.21
Ccdc9Q8VC31 Gm7506-201ENSMUST00000207758 815 ntBASIC16.37■□□□□ 0.21
Ccdc9Q8VC31 Gm18622-201ENSMUST00000219361 595 ntBASIC16.37■□□□□ 0.21
Ccdc9Q8VC31 Tomm22-201ENSMUST00000023062 1031 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Ccdc9Q8VC31 Birc2-201ENSMUST00000054878 378 ntBASIC16.37■□□□□ 0.21
Ccdc9Q8VC31 4931422A03Rik-201ENSMUST00000056170 1037 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Ccdc9Q8VC31 Ptprcap-201ENSMUST00000061086 927 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Ccdc9Q8VC31 Hp1bp3-201ENSMUST00000030541 3311 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
Ccdc9Q8VC31 Sstr5-202ENSMUST00000165183 2581 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Ccdc9Q8VC31 Rhobtb1-210ENSMUST00000167384 2331 ntTSL 5 BASIC16.37■□□□□ 0.21
Ccdc9Q8VC31 Dcaf13-201ENSMUST00000022909 1551 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Ccdc9Q8VC31 Pml-211ENSMUST00000153820 2652 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Ccdc9Q8VC31 Cyp4f40-201ENSMUST00000165061 1858 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Ccdc9Q8VC31 Asl-203ENSMUST00000160129 2413 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
Ccdc9Q8VC31 Dnmt3b-205ENSMUST00000103150 4070 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Ccdc9Q8VC31 Tnk1-203ENSMUST00000108628 2450 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
Ccdc9Q8VC31 Tcf4-234ENSMUST00000201410 1915 ntTSL 5 BASIC16.37■□□□□ 0.21
Ccdc9Q8VC31 Tcf4-243ENSMUST00000202057 1941 ntTSL 5 BASIC16.37■□□□□ 0.21
Ccdc9Q8VC31 Gm34006-202ENSMUST00000216467 1918 ntTSL 2 BASIC16.37■□□□□ 0.21
Ccdc9Q8VC31 Kcnj3-203ENSMUST00000112633 1679 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Ccdc9Q8VC31 Kcnb1-204ENSMUST00000207917 11153 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Ccdc9Q8VC31 Hadhb-202ENSMUST00000114783 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ccdc9Q8VC31 Gm12020-201ENSMUST00000119030 2042 ntBASIC16.36■□□□□ 0.21
Ccdc9Q8VC31 Mogat2-201ENSMUST00000064231 1780 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ccdc9Q8VC31 Gm16564-201ENSMUST00000162545 3010 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Ccdc9Q8VC31 4930429H19Rik-201ENSMUST00000205260 1818 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Ccdc9Q8VC31 Pak1-201ENSMUST00000033040 3065 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ccdc9Q8VC31 Edc4-202ENSMUST00000119261 4645 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ccdc9Q8VC31 Naaladl1-201ENSMUST00000044451 2491 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
Ccdc9Q8VC31 Arhgef15-203ENSMUST00000108671 4372 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
Ccdc9Q8VC31 Fam3a-203ENSMUST00000114139 931 ntTSL 5 BASIC16.36■□□□□ 0.21
Ccdc9Q8VC31 9430038I01Rik-202ENSMUST00000117404 699 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
Ccdc9Q8VC31 Gm16295-201ENSMUST00000139512 643 ntTSL 3 BASIC16.36■□□□□ 0.21
Ccdc9Q8VC31 Pbx2-205ENSMUST00000183827 1186 ntTSL 5 BASIC16.36■□□□□ 0.21
Ccdc9Q8VC31 Cmtm5-203ENSMUST00000227441 610 ntBASIC16.36■□□□□ 0.21
Ccdc9Q8VC31 Rit1-201ENSMUST00000029692 1204 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ccdc9Q8VC31 Prdm5-203ENSMUST00000081219 984 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Ccdc9Q8VC31 Slc29a1-203ENSMUST00000097317 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ccdc9Q8VC31 Cpped1-202ENSMUST00000096272 2663 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ccdc9Q8VC31 Iqsec3-203ENSMUST00000151397 8067 ntTSL 2 BASIC16.36■□□□□ 0.21
Ccdc9Q8VC31 Tgfb1i1-207ENSMUST00000167965 1746 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ccdc9Q8VC31 4930432B10Rik-201ENSMUST00000181688 2085 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Ccdc9Q8VC31 Sorl1-201ENSMUST00000060989 10715 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ccdc9Q8VC31 Zkscan3-202ENSMUST00000116433 1421 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Ccdc9Q8VC31 Ildr1-203ENSMUST00000119464 2878 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ccdc9Q8VC31 Arl6ip1-201ENSMUST00000032888 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ccdc9Q8VC31 Gtf2ird1-207ENSMUST00000111245 3299 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ccdc9Q8VC31 Rnf26-205ENSMUST00000215685 1804 ntTSL 5 BASIC16.35■□□□□ 0.21
Ccdc9Q8VC31 Rgs12-207ENSMUST00000114285 2924 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
Ccdc9Q8VC31 Amdhd2-201ENSMUST00000040735 1496 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ccdc9Q8VC31 Ttbk2-203ENSMUST00000085840 11152 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
Ccdc9Q8VC31 Pcnx-201ENSMUST00000021567 12139 ntAPPRIS P2 TSL 2 BASIC16.35■□□□□ 0.21
Ccdc9Q8VC31 Ap4e1-203ENSMUST00000110394 2271 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Ccdc9Q8VC31 Hltf-201ENSMUST00000002502 4955 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ccdc9Q8VC31 Gm20687-203ENSMUST00000185121 4242 ntTSL 2 BASIC16.35■□□□□ 0.21
Ccdc9Q8VC31 Nemp1-203ENSMUST00000118728 2362 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ccdc9Q8VC31 Gm17276-201ENSMUST00000180839 2782 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Ccdc9Q8VC31 Itpr3-201ENSMUST00000049308 8990 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 27.1 ms