Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Stau2-215ENSMUST00000162435 2735 ntTSL 5 BASIC16.06■□□□□ 0.16
Trim56Q80VI1 Ssh3-201ENSMUST00000037992 2728 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trim56Q80VI1 Egln3-201ENSMUST00000039516 2662 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trim56Q80VI1 Fam71a-201ENSMUST00000171798 2234 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
Trim56Q80VI1 Mbp-207ENSMUST00000114674 2108 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Trim56Q80VI1 Cyb561d1-202ENSMUST00000106654 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trim56Q80VI1 Trim34b-201ENSMUST00000106847 1827 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trim56Q80VI1 Kir3dl1-202ENSMUST00000113105 1544 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trim56Q80VI1 Rab22a-201ENSMUST00000029024 7155 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trim56Q80VI1 Canx-205ENSMUST00000179865 4281 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trim56Q80VI1 Vgll3-201ENSMUST00000168064 7009 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trim56Q80VI1 Gins2-201ENSMUST00000034278 3900 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trim56Q80VI1 Far2os1-201ENSMUST00000162391 555 ntTSL 2 BASIC16.06■□□□□ 0.16
Trim56Q80VI1 Prss55-203ENSMUST00000171503 1074 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Trim56Q80VI1 Gsg1l2-202ENSMUST00000181566 1158 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
Trim56Q80VI1 Psmc3ip-201ENSMUST00000019447 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trim56Q80VI1 AC087891.2-201ENSMUST00000219293 658 ntTSL 5 BASIC16.06■□□□□ 0.16
Trim56Q80VI1 Wdr74-201ENSMUST00000049424 1204 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trim56Q80VI1 Cby3-201ENSMUST00000052596 703 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Trim56Q80VI1 Cep170b-201ENSMUST00000092279 3817 ntTSL 5 BASIC16.06■□□□□ 0.16
Trim56Q80VI1 Zfp553-202ENSMUST00000106312 3342 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trim56Q80VI1 Trim52-201ENSMUST00000022708 3075 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
Trim56Q80VI1 Cblb-201ENSMUST00000114471 6648 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trim56Q80VI1 4833439L19Rik-201ENSMUST00000026989 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trim56Q80VI1 Trib1-201ENSMUST00000067543 4330 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trim56Q80VI1 Slc16a13-201ENSMUST00000060010 2531 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trim56Q80VI1 Elac1-201ENSMUST00000041138 4971 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trim56Q80VI1 Prkcd-203ENSMUST00000112203 1927 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Trim56Q80VI1 Rpl21-201ENSMUST00000035983 1856 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trim56Q80VI1 A430034D21Rik-201ENSMUST00000194339 1802 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Trim56Q80VI1 Lin54-208ENSMUST00000149714 3869 ntTSL 5 BASIC16.05■□□□□ 0.16
Trim56Q80VI1 Spef1-202ENSMUST00000110218 2600 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trim56Q80VI1 Ldlrap1-201ENSMUST00000037828 6549 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trim56Q80VI1 Rapsn-202ENSMUST00000111445 1450 ntTSL 5 BASIC16.05■□□□□ 0.16
Trim56Q80VI1 Tjap1-203ENSMUST00000180283 2368 ntAPPRIS P2 TSL 5 BASIC16.05■□□□□ 0.16
Trim56Q80VI1 Gm43399-201ENSMUST00000202546 2374 ntBASIC16.05■□□□□ 0.16
Trim56Q80VI1 Dlg4-204ENSMUST00000108589 3271 ntTSL 5 BASIC16.05■□□□□ 0.16
Trim56Q80VI1 AU040320-202ENSMUST00000102607 4191 ntAPPRIS P4 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trim56Q80VI1 Gm43650-201ENSMUST00000197337 1382 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Trim56Q80VI1 Gm30214-201ENSMUST00000199271 1383 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Trim56Q80VI1 Anapc15-204ENSMUST00000106973 650 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
Trim56Q80VI1 Id1-202ENSMUST00000109824 1160 ntAPPRIS ALT2 BASIC16.05■□□□□ 0.16
Trim56Q80VI1 Gm12928-201ENSMUST00000117115 573 ntBASIC16.05■□□□□ 0.16
Trim56Q80VI1 Rpl17-ps5-201ENSMUST00000121001 555 ntBASIC16.05■□□□□ 0.16
Trim56Q80VI1 Tmem80-205ENSMUST00000132061 667 ntAPPRIS P1 TSL 3 BASIC16.05■□□□□ 0.16
Trim56Q80VI1 Gm13112-201ENSMUST00000138795 1258 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Trim56Q80VI1 Rasgef1b-209ENSMUST00000168092 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trim56Q80VI1 Asb1-205ENSMUST00000188081 1272 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Trim56Q80VI1 2810429I04Rik-210ENSMUST00000189464 868 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Trim56Q80VI1 Gm43691-201ENSMUST00000196625 697 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Trim56Q80VI1 Srgn-201ENSMUST00000020271 938 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trim56Q80VI1 4933435G04Rik-201ENSMUST00000205892 2108 ntBASIC16.05■□□□□ 0.16
Trim56Q80VI1 Gm42303-201ENSMUST00000209960 1170 ntTSL 5 BASIC16.05■□□□□ 0.16
Trim56Q80VI1 Nudt17-201ENSMUST00000029742 1039 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Trim56Q80VI1 Txn1-201ENSMUST00000030051 1051 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trim56Q80VI1 Rasgef1b-201ENSMUST00000031276 2990 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trim56Q80VI1 Gm5129-201ENSMUST00000065372 300 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
Trim56Q80VI1 Ppil3-201ENSMUST00000081677 896 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trim56Q80VI1 4933434M16Rik-202ENSMUST00000153429 1940 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Trim56Q80VI1 Zfp503-201ENSMUST00000043409 4216 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trim56Q80VI1 Kcnh1-202ENSMUST00000110844 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trim56Q80VI1 Scp2-201ENSMUST00000030340 2640 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trim56Q80VI1 Klf12-201ENSMUST00000097079 1856 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trim56Q80VI1 Hspb8-201ENSMUST00000036991 1816 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trim56Q80VI1 Cplx4-201ENSMUST00000025397 1751 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trim56Q80VI1 Itgb1-201ENSMUST00000090006 3815 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trim56Q80VI1 Usp42-201ENSMUST00000053287 5151 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
Trim56Q80VI1 Arfgap1-205ENSMUST00000108862 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trim56Q80VI1 Clpb-202ENSMUST00000106998 2287 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
Trim56Q80VI1 Adam15-204ENSMUST00000107448 2893 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
Trim56Q80VI1 Ugt1a5-201ENSMUST00000097659 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trim56Q80VI1 Zbtb25-205ENSMUST00000176509 1591 ntTSL 2 BASIC16.04■□□□□ 0.16
Trim56Q80VI1 Shank3-201ENSMUST00000039074 7131 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trim56Q80VI1 Zkscan7-202ENSMUST00000215872 4035 ntTSL 5 BASIC16.04■□□□□ 0.16
Trim56Q80VI1 Rpn2-202ENSMUST00000116380 2756 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trim56Q80VI1 Appbp2-201ENSMUST00000018625 6463 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trim56Q80VI1 Chaf1a-201ENSMUST00000002914 3308 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trim56Q80VI1 Kansl2-ps-201ENSMUST00000181818 1461 ntBASIC16.04■□□□□ 0.16
Trim56Q80VI1 Trim32-202ENSMUST00000107366 3191 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trim56Q80VI1 Gm43273-201ENSMUST00000199649 2594 ntBASIC16.04■□□□□ 0.16
Trim56Q80VI1 Fhad1-202ENSMUST00000105779 4263 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
Trim56Q80VI1 Cenpl-202ENSMUST00000111618 1996 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
Trim56Q80VI1 Mapt-201ENSMUST00000100347 1362 ntAPPRIS P4 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trim56Q80VI1 Rgs6-204ENSMUST00000185674 1362 ntTSL 5 BASIC16.04■□□□□ 0.16
Trim56Q80VI1 Tbx4-201ENSMUST00000000096 3011 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trim56Q80VI1 Aatk-202ENSMUST00000103019 5177 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trim56Q80VI1 Eps8l1-214ENSMUST00000171445 2975 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
Trim56Q80VI1 A530083I20Rik-201ENSMUST00000180486 2421 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Trim56Q80VI1 Fhl4-202ENSMUST00000216889 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trim56Q80VI1 Tmprss12-201ENSMUST00000096200 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trim56Q80VI1 Gm10010-201ENSMUST00000071101 2346 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Trim56Q80VI1 Ap2a1-202ENSMUST00000107857 3301 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Trim56Q80VI1 Cox16-202ENSMUST00000110340 668 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Trim56Q80VI1 Ift20-203ENSMUST00000128788 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trim56Q80VI1 Gm44397-201ENSMUST00000195950 113 ntBASIC16.04■□□□□ 0.16
Trim56Q80VI1 4930438A08Rik-202ENSMUST00000208022 918 ntTSL 5 BASIC16.04■□□□□ 0.16
Trim56Q80VI1 Fam173b-201ENSMUST00000042702 1164 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trim56Q80VI1 Tada3-203ENSMUST00000099118 1282 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Trim56Q80VI1 Mpi-201ENSMUST00000034856 1780 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trim56Q80VI1 Cmip-201ENSMUST00000095172 2276 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 27.1 ms