Protein–RNA interactions for Protein: Q62158

Trim27, Zinc finger protein RFP, mousemouse

Predictions only

Length 513 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim27Q62158 Gm26867-201ENSMUST00000180963 3615 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Trim27Q62158 Hapln4-201ENSMUST00000007738 3648 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trim27Q62158 Nacc2-201ENSMUST00000028300 6378 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trim27Q62158 Srrm1-202ENSMUST00000084846 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trim27Q62158 Adgrg3-201ENSMUST00000051259 2439 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trim27Q62158 Styxl1-204ENSMUST00000111163 1276 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trim27Q62158 Flt3l-201ENSMUST00000146760 1075 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trim27Q62158 Tmem61-202ENSMUST00000177702 561 ntTSL 5 BASIC16.74■□□□□ 0.27
Trim27Q62158 Gm19265-201ENSMUST00000201818 894 ntTSL 3 BASIC16.74■□□□□ 0.27
Trim27Q62158 Fuom-201ENSMUST00000026539 685 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trim27Q62158 1700020A23Rik-201ENSMUST00000028898 712 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trim27Q62158 1700018B08Rik-201ENSMUST00000034265 1084 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trim27Q62158 Rps11-201ENSMUST00000003521 661 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trim27Q62158 Erp29-201ENSMUST00000052590 1123 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Trim27Q62158 Gm5161-201ENSMUST00000075243 853 ntBASIC16.74■□□□□ 0.27
Trim27Q62158 Kansl3-205ENSMUST00000186470 2801 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Trim27Q62158 Ttc7-201ENSMUST00000041110 4614 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trim27Q62158 Polr3g-201ENSMUST00000048993 3054 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trim27Q62158 Dnmt3l-208ENSMUST00000151242 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trim27Q62158 Smarcb1-201ENSMUST00000000925 1660 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trim27Q62158 Trim59-201ENSMUST00000107802 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trim27Q62158 Anks1b-231ENSMUST00000183136 2786 ntTSL 5 BASIC16.74■□□□□ 0.27
Trim27Q62158 Gm37795-201ENSMUST00000194216 2459 ntBASIC16.74■□□□□ 0.27
Trim27Q62158 Ankmy2-201ENSMUST00000041640 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trim27Q62158 Mpi-201ENSMUST00000034856 1780 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trim27Q62158 Pcdh10-204ENSMUST00000193252 4638 ntAPPRIS ALT2 BASIC16.74■□□□□ 0.27
Trim27Q62158 Dhx9-201ENSMUST00000042141 4616 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
Trim27Q62158 Rrp1b-201ENSMUST00000081339 4874 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trim27Q62158 Tspan32-205ENSMUST00000105924 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trim27Q62158 Gnb2-202ENSMUST00000111020 1470 ntTSL 5 BASIC16.73■□□□□ 0.27
Trim27Q62158 Dlst-201ENSMUST00000053811 2764 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trim27Q62158 Clstn2-202ENSMUST00000162295 4174 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
Trim27Q62158 4930556M19Rik-201ENSMUST00000180604 2468 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Trim27Q62158 Slco3a1-203ENSMUST00000107453 3793 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Trim27Q62158 Arhgef1-202ENSMUST00000098683 3375 ntAPPRIS P4 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trim27Q62158 Wisp3-201ENSMUST00000076713 1419 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
Trim27Q62158 Gm16244-201ENSMUST00000159313 2327 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Trim27Q62158 Neil1-203ENSMUST00000190245 1693 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trim27Q62158 Cpxm2-201ENSMUST00000033149 3498 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trim27Q62158 Trav3d-3-201ENSMUST00000103599 276 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
Trim27Q62158 Trav3n-3-201ENSMUST00000103625 276 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
Trim27Q62158 Gm13886-201ENSMUST00000117876 1183 ntBASIC16.73■□□□□ 0.27
Trim27Q62158 Gm11524-201ENSMUST00000119349 807 ntBASIC16.73■□□□□ 0.27
Trim27Q62158 Adgrv1-205ENSMUST00000126444 3823 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Trim27Q62158 4930527A07Rik-201ENSMUST00000130677 559 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Trim27Q62158 Gm15491-201ENSMUST00000133963 751 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Trim27Q62158 Trav3-3-202ENSMUST00000183835 276 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
Trim27Q62158 Gm29542-201ENSMUST00000186876 704 ntTSL 3 BASIC16.73■□□□□ 0.27
Trim27Q62158 Cited1-201ENSMUST00000050551 901 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trim27Q62158 Gm2423-201ENSMUST00000074863 733 ntBASIC16.73■□□□□ 0.27
Trim27Q62158 Zic4-209ENSMUST00000173933 1764 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
Trim27Q62158 Inpp4a-209ENSMUST00000140264 3676 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Trim27Q62158 Arl6ip6-201ENSMUST00000028336 2548 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trim27Q62158 Atg16l1-202ENSMUST00000113186 3004 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trim27Q62158 Oprm1-215ENSMUST00000105607 2369 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trim27Q62158 Arr3-201ENSMUST00000113769 1359 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trim27Q62158 Gm37019-201ENSMUST00000192133 2134 ntBASIC16.73■□□□□ 0.27
Trim27Q62158 Gm21038-201ENSMUST00000222205 1383 ntBASIC16.73■□□□□ 0.27
Trim27Q62158 Noxa1-202ENSMUST00000114373 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trim27Q62158 Itgav-202ENSMUST00000111740 6788 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
Trim27Q62158 Nol4-208ENSMUST00000164893 2175 ntAPPRIS ALT1 TSL 5 BASIC16.72■□□□□ 0.27
Trim27Q62158 Slc8b1-204ENSMUST00000111890 2775 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Trim27Q62158 Speg-205ENSMUST00000113590 3393 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Trim27Q62158 Ccdc106-202ENSMUST00000108571 1318 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Trim27Q62158 Tnfrsf11a-201ENSMUST00000027559 5027 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trim27Q62158 Gale-202ENSMUST00000102541 1430 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trim27Q62158 Ccnc-203ENSMUST00000108240 1406 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Trim27Q62158 Irak3-201ENSMUST00000020448 3097 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trim27Q62158 Srrm1-203ENSMUST00000105861 3797 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
Trim27Q62158 B3gat1-206ENSMUST00000161431 3858 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
Trim27Q62158 Hmgb3-201ENSMUST00000015361 1544 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trim27Q62158 Cd81-201ENSMUST00000037941 1533 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trim27Q62158 Ldlrap1-201ENSMUST00000037828 6549 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trim27Q62158 Phf21b-201ENSMUST00000016768 3377 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trim27Q62158 Gsn-201ENSMUST00000028239 2653 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trim27Q62158 Gfpt1-202ENSMUST00000113655 1255 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Trim27Q62158 Pigyl-201ENSMUST00000123680 695 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
Trim27Q62158 B3gat1-204ENSMUST00000160899 3801 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Trim27Q62158 Gm10576-201ENSMUST00000191927 825 ntBASIC16.72■□□□□ 0.27
Trim27Q62158 Gm17870-201ENSMUST00000219489 1174 ntBASIC16.72■□□□□ 0.27
Trim27Q62158 Armc12-201ENSMUST00000025060 1083 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trim27Q62158 Gm5129-201ENSMUST00000065372 300 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
Trim27Q62158 Krt35-201ENSMUST00000103127 1722 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trim27Q62158 Gm13730-201ENSMUST00000121036 1462 ntBASIC16.72■□□□□ 0.27
Trim27Q62158 Orc6-202ENSMUST00000170141 1466 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Trim27Q62158 Zbtb46-201ENSMUST00000029106 5309 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
Trim27Q62158 Fbxo10-201ENSMUST00000052236 4635 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trim27Q62158 Gna13-201ENSMUST00000020930 6160 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trim27Q62158 Arid4b-202ENSMUST00000110533 3020 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Trim27Q62158 Ecsit-201ENSMUST00000098937 1673 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trim27Q62158 Acot4-201ENSMUST00000021652 6203 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trim27Q62158 Cul7-201ENSMUST00000043464 5530 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trim27Q62158 Cnppd1-201ENSMUST00000041213 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trim27Q62158 Ciz1-203ENSMUST00000113332 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trim27Q62158 Nkain3-201ENSMUST00000102998 3098 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Trim27Q62158 Gm29530-201ENSMUST00000187556 1956 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Trim27Q62158 Adsl-206ENSMUST00000168756 1439 ntTSL 5 BASIC16.71■□□□□ 0.27
Trim27Q62158 Kcnc2-201ENSMUST00000092175 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trim27Q62158 Scg3-202ENSMUST00000213324 2152 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Trim27Q62158 Bap1-201ENSMUST00000022458 3460 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Retrieved 100 of 76,532 protein–RNA pairs in 28.9 ms