Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Gm16845-201ENSMUST00000180419 1415 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Trim40Q3UWA4 Sbno2-209ENSMUST00000219260 4850 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
Trim40Q3UWA4 4931428F04Rik-203ENSMUST00000212219 2044 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Trim40Q3UWA4 Myh14-203ENSMUST00000107900 6400 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
Trim40Q3UWA4 CT025626.1-201ENSMUST00000223735 1455 ntBASIC12.79□□□□□ -0.36
Trim40Q3UWA4 Klhl30-201ENSMUST00000027533 3089 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Trim40Q3UWA4 AC116503.1-201ENSMUST00000215445 2192 ntBASIC12.79□□□□□ -0.36
Trim40Q3UWA4 Col14a1-203ENSMUST00000110221 5679 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Trim40Q3UWA4 Rtkn2-203ENSMUST00000117086 2246 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Trim40Q3UWA4 Zfp595-205ENSMUST00000171466 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Trim40Q3UWA4 Dhdds-203ENSMUST00000105886 1015 ntTSL 5 BASIC12.79□□□□□ -0.36
Trim40Q3UWA4 Cpt2-203ENSMUST00000106720 1015 ntTSL 2 BASIC12.79□□□□□ -0.36
Trim40Q3UWA4 Gm9385-201ENSMUST00000117563 472 ntBASIC12.79□□□□□ -0.36
Trim40Q3UWA4 Timm23-201ENSMUST00000013845 1173 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Trim40Q3UWA4 Tspan18-201ENSMUST00000028646 1203 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Trim40Q3UWA4 Tlcd2-201ENSMUST00000043598 1153 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
Trim40Q3UWA4 Mrpl34-201ENSMUST00000048914 607 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Trim40Q3UWA4 Gm9925-201ENSMUST00000066583 483 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
Trim40Q3UWA4 Ttyh1-202ENSMUST00000079415 2882 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Trim40Q3UWA4 Ncald-211ENSMUST00000168992 3538 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
Trim40Q3UWA4 St6gal1-201ENSMUST00000023601 4506 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Trim40Q3UWA4 Sin3a-208ENSMUST00000168678 5206 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
Trim40Q3UWA4 Ciz1-202ENSMUST00000113331 2604 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
Trim40Q3UWA4 Igf2r-201ENSMUST00000024599 8887 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Trim40Q3UWA4 Rnf19b-202ENSMUST00000097874 1992 ntTSL 5 BASIC12.79□□□□□ -0.36
Trim40Q3UWA4 Tmem201-202ENSMUST00000103208 3620 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
Trim40Q3UWA4 Gatad2a-206ENSMUST00000212478 3622 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
Trim40Q3UWA4 Slc6a8-201ENSMUST00000033752 3964 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Trim40Q3UWA4 Slc39a8-206ENSMUST00000180196 3383 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
Trim40Q3UWA4 Tspan32-206ENSMUST00000105925 1376 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Trim40Q3UWA4 Armcx1-205ENSMUST00000113199 2413 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Trim40Q3UWA4 Trafd1-202ENSMUST00000120784 2425 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Trim40Q3UWA4 Nup88-203ENSMUST00000108531 2453 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Trim40Q3UWA4 Rlbp1-201ENSMUST00000053718 2134 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Trim40Q3UWA4 Rps6kb2-202ENSMUST00000118483 1409 ntTSL 5 BASIC12.79□□□□□ -0.36
Trim40Q3UWA4 Gm28043-201ENSMUST00000130871 6521 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
Trim40Q3UWA4 Oas1e-201ENSMUST00000100785 1801 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trim40Q3UWA4 Snx13-201ENSMUST00000048519 6231 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trim40Q3UWA4 Gm42480-201ENSMUST00000198434 2595 ntBASIC12.78□□□□□ -0.36
Trim40Q3UWA4 Fhl4-202ENSMUST00000216889 1860 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trim40Q3UWA4 Acaa2-201ENSMUST00000041053 1515 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trim40Q3UWA4 Tnfaip8-207ENSMUST00000148159 1921 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Trim40Q3UWA4 Tmem55a-201ENSMUST00000029875 2339 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trim40Q3UWA4 Tfe3-206ENSMUST00000115679 3239 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Trim40Q3UWA4 Trpv4-202ENSMUST00000112217 2436 ntTSL 5 BASIC12.78□□□□□ -0.36
Trim40Q3UWA4 Gpnmb-203ENSMUST00000204260 2430 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trim40Q3UWA4 Arhgef2-219ENSMUST00000176500 4492 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
Trim40Q3UWA4 Tspan12-201ENSMUST00000031678 2490 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trim40Q3UWA4 Sgce-205ENSMUST00000115579 1696 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trim40Q3UWA4 Bud13-201ENSMUST00000074957 2539 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trim40Q3UWA4 Trappc12-201ENSMUST00000020954 3377 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trim40Q3UWA4 Get4-202ENSMUST00000110878 1180 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trim40Q3UWA4 Sgsm3-208ENSMUST00000139517 2996 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trim40Q3UWA4 Tmem262-201ENSMUST00000143303 545 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trim40Q3UWA4 Smim17-203ENSMUST00000161855 664 ntAPPRIS P1 TSL 3 BASIC12.78□□□□□ -0.36
Trim40Q3UWA4 Nabp1-202ENSMUST00000185534 708 ntTSL 2 BASIC12.78□□□□□ -0.36
Trim40Q3UWA4 9430007M09Rik-201ENSMUST00000201947 804 ntBASIC12.78□□□□□ -0.36
Trim40Q3UWA4 Mdk-202ENSMUST00000069423 773 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trim40Q3UWA4 Bcl7a-201ENSMUST00000031391 4718 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trim40Q3UWA4 Tmem206-201ENSMUST00000027940 2246 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trim40Q3UWA4 Klhl18-201ENSMUST00000068025 4530 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trim40Q3UWA4 Lnx1-205ENSMUST00000117525 2259 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Trim40Q3UWA4 Arhgap10-202ENSMUST00000210519 2295 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Trim40Q3UWA4 Gm13613-201ENSMUST00000126240 1444 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Trim40Q3UWA4 Rtp3-201ENSMUST00000084922 1425 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
Trim40Q3UWA4 Fosb-207ENSMUST00000208505 3523 ntTSL 5 BASIC12.78□□□□□ -0.36
Trim40Q3UWA4 Sbds-201ENSMUST00000026387 1548 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trim40Q3UWA4 Gm13814-201ENSMUST00000141341 3077 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
Trim40Q3UWA4 Frzb-201ENSMUST00000028389 3149 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Trim40Q3UWA4 Ncan-201ENSMUST00000002412 7195 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Trim40Q3UWA4 D6Ertd527e-203ENSMUST00000203747 2216 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.36
Trim40Q3UWA4 Bscl2-203ENSMUST00000159634 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.36
Trim40Q3UWA4 Aldh9a1-201ENSMUST00000028004 2835 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Trim40Q3UWA4 Mapk4-201ENSMUST00000091851 4594 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Trim40Q3UWA4 Mpv17-201ENSMUST00000154241 1724 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.36
Trim40Q3UWA4 Abhd14b-201ENSMUST00000048527 1745 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Trim40Q3UWA4 Iqsec3-203ENSMUST00000151397 8067 ntTSL 2 BASIC12.77□□□□□ -0.36
Trim40Q3UWA4 Vps4b-201ENSMUST00000094646 4633 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Trim40Q3UWA4 Elf1-201ENSMUST00000040131 4235 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.36
Trim40Q3UWA4 Cnppd1-201ENSMUST00000041213 2429 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Trim40Q3UWA4 Gm16976-201ENSMUST00000099718 1894 ntTSL 5 BASIC12.77□□□□□ -0.37
Trim40Q3UWA4 Gpd2-207ENSMUST00000169687 5745 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Trim40Q3UWA4 Dnajc24-201ENSMUST00000102555 1197 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Trim40Q3UWA4 Pex11g-202ENSMUST00000111081 666 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Trim40Q3UWA4 Slc7a10-203ENSMUST00000135452 629 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Trim40Q3UWA4 Gm17613-201ENSMUST00000138893 669 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Trim40Q3UWA4 Gm13830-202ENSMUST00000144202 381 ntTSL 3 BASIC12.77□□□□□ -0.37
Trim40Q3UWA4 Lmbrd1-202ENSMUST00000186096 688 ntTSL 2 BASIC12.77□□□□□ -0.37
Trim40Q3UWA4 Hist1h3h-201ENSMUST00000188775 411 ntAPPRIS P1 BASIC12.77□□□□□ -0.37
Trim40Q3UWA4 Hist1h3i-201ENSMUST00000189457 411 ntAPPRIS P1 BASIC12.77□□□□□ -0.37
Trim40Q3UWA4 Gm44719-201ENSMUST00000206404 149 ntBASIC12.77□□□□□ -0.37
Trim40Q3UWA4 AC154572.2-201ENSMUST00000225105 997 ntBASIC12.77□□□□□ -0.37
Trim40Q3UWA4 AC139350.3-201ENSMUST00000226151 420 ntBASIC12.77□□□□□ -0.37
Trim40Q3UWA4 Rpl28-202ENSMUST00000078432 772 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
Trim40Q3UWA4 Cep295nl-201ENSMUST00000103024 1944 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Trim40Q3UWA4 Zfyve28-201ENSMUST00000094868 3983 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Trim40Q3UWA4 Crybg1-202ENSMUST00000200401 7525 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
Trim40Q3UWA4 Capg-203ENSMUST00000114072 1388 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Trim40Q3UWA4 Gm14342-201ENSMUST00000137629 2119 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Trim40Q3UWA4 Opn4-201ENSMUST00000022331 2156 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 45.4 ms