Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Lrfn2-201ENSMUST00000046254 3202 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Limch1Q3UH68 Prrg3-203ENSMUST00000170096 3408 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Limch1Q3UH68 Axdnd1-204ENSMUST00000178036 3586 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
Limch1Q3UH68 Gpr157-201ENSMUST00000094451 4900 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Limch1Q3UH68 Yod1-201ENSMUST00000049813 6128 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Limch1Q3UH68 Pcdha11-201ENSMUST00000115658 5359 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Limch1Q3UH68 Wdr5-201ENSMUST00000113952 2890 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Limch1Q3UH68 Stau2-215ENSMUST00000162435 2735 ntTSL 5 BASIC16.06■□□□□ 0.16
Limch1Q3UH68 Rnf114-201ENSMUST00000078050 2502 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Limch1Q3UH68 Prr33-201ENSMUST00000054910 2251 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Limch1Q3UH68 Kyat1-204ENSMUST00000113661 2057 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Limch1Q3UH68 H2-Q6-202ENSMUST00000174699 2085 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
Limch1Q3UH68 Stag1-206ENSMUST00000129269 6186 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Limch1Q3UH68 Il18r1-204ENSMUST00000193391 1738 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Limch1Q3UH68 Atp9b-213ENSMUST00000225980 5150 ntAPPRIS P2 BASIC16.06■□□□□ 0.16
Limch1Q3UH68 Crybb3-203ENSMUST00000118226 892 ntAPPRIS P1 TSL 3 BASIC16.06■□□□□ 0.16
Limch1Q3UH68 Gm15222-201ENSMUST00000127359 344 ntTSL 3 BASIC16.06■□□□□ 0.16
Limch1Q3UH68 Gm6283-201ENSMUST00000182369 1000 ntBASIC16.06■□□□□ 0.16
Limch1Q3UH68 Gm28760-201ENSMUST00000185995 736 ntBASIC16.06■□□□□ 0.16
Limch1Q3UH68 Gm31326-201ENSMUST00000191856 1048 ntBASIC16.06■□□□□ 0.16
Limch1Q3UH68 Agrp-202ENSMUST00000194091 734 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
Limch1Q3UH68 4930502C17Rik-201ENSMUST00000200282 948 ntBASIC16.06■□□□□ 0.16
Limch1Q3UH68 Cxcl17-202ENSMUST00000200880 760 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Limch1Q3UH68 Gm45059-201ENSMUST00000205558 1077 ntBASIC16.06■□□□□ 0.16
Limch1Q3UH68 Gm4971-201ENSMUST00000205991 1108 ntBASIC16.06■□□□□ 0.16
Limch1Q3UH68 Coq7-205ENSMUST00000209146 799 ntTSL 3 BASIC16.06■□□□□ 0.16
Limch1Q3UH68 Isca2-201ENSMUST00000021667 883 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Limch1Q3UH68 AC166997.1-201ENSMUST00000225122 572 ntBASIC16.06■□□□□ 0.16
Limch1Q3UH68 Prss38-201ENSMUST00000061481 1243 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Limch1Q3UH68 Cxcl17-201ENSMUST00000074040 761 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
Limch1Q3UH68 Crybb3-201ENSMUST00000076069 816 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Limch1Q3UH68 Gm25857-201ENSMUST00000082788 129 ntBASIC16.06■□□□□ 0.16
Limch1Q3UH68 Olfr554-201ENSMUST00000098221 954 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
Limch1Q3UH68 1600014C10Rik-205ENSMUST00000178876 3283 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Limch1Q3UH68 Cog7-201ENSMUST00000057576 2902 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Limch1Q3UH68 Wbp11-201ENSMUST00000116514 2739 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Limch1Q3UH68 Galnt6-203ENSMUST00000161514 2746 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Limch1Q3UH68 Mcoln2-201ENSMUST00000011152 2520 ntAPPRIS P4 TSL 1 (best) BASIC16.06■□□□□ 0.16
Limch1Q3UH68 Eif1ad-201ENSMUST00000025759 2469 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Limch1Q3UH68 Cpeb4-201ENSMUST00000020543 2312 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Limch1Q3UH68 Gtf2ird1-229ENSMUST00000202554 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Limch1Q3UH68 Ube3a-201ENSMUST00000107537 4911 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Limch1Q3UH68 Vamp8-202ENSMUST00000142613 2076 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Limch1Q3UH68 Slc22a15-207ENSMUST00000190824 3010 ntTSL 5 BASIC16.05■□□□□ 0.16
Limch1Q3UH68 Alkbh4-202ENSMUST00000100568 1714 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
Limch1Q3UH68 Alx1-208ENSMUST00000219194 1695 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
Limch1Q3UH68 Mtif3-202ENSMUST00000066675 4927 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Limch1Q3UH68 Arhgap4-204ENSMUST00000114406 2749 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Limch1Q3UH68 Etfrf1-205ENSMUST00000111724 1618 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Limch1Q3UH68 Gtf2a1l-201ENSMUST00000024970 1621 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Limch1Q3UH68 Cnnm2-202ENSMUST00000099373 3558 ntAPPRIS P4 TSL 1 (best) BASIC16.05■□□□□ 0.16
Limch1Q3UH68 Fntb-206ENSMUST00000137826 1442 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
Limch1Q3UH68 Gm6871-201ENSMUST00000073410 1430 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
Limch1Q3UH68 Gm2762-202ENSMUST00000201517 2339 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Limch1Q3UH68 Grb10-201ENSMUST00000093321 5061 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
Limch1Q3UH68 Taco1-201ENSMUST00000002048 1383 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Limch1Q3UH68 Ift52-201ENSMUST00000018002 2248 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Limch1Q3UH68 Cpne4-201ENSMUST00000057742 3959 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Limch1Q3UH68 Mul1-203ENSMUST00000105815 473 ntTSL 3 BASIC16.05■□□□□ 0.16
Limch1Q3UH68 Bola2-202ENSMUST00000106369 642 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Limch1Q3UH68 Pmvk-202ENSMUST00000107410 652 ntTSL 5 BASIC16.05■□□□□ 0.16
Limch1Q3UH68 Shf-202ENSMUST00000110530 910 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
Limch1Q3UH68 Rnaseh2a-206ENSMUST00000128972 1141 ntTSL 2 BASIC16.05■□□□□ 0.16
Limch1Q3UH68 Tex30-211ENSMUST00000150911 960 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
Limch1Q3UH68 Gm10535-201ENSMUST00000182275 915 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Limch1Q3UH68 1700080E11Rik-202ENSMUST00000190661 682 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Limch1Q3UH68 Gm43156-201ENSMUST00000202338 2127 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Limch1Q3UH68 AC154595.3-201ENSMUST00000224579 384 ntBASIC16.05■□□□□ 0.16
Limch1Q3UH68 Ccdc58-201ENSMUST00000099937 747 ntTSL 3 BASIC16.05■□□□□ 0.16
Limch1Q3UH68 Tcirg1-211ENSMUST00000145791 2729 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Limch1Q3UH68 Eml3-201ENSMUST00000096241 3322 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Limch1Q3UH68 Cplx4-201ENSMUST00000025397 1751 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Limch1Q3UH68 Il1rn-204ENSMUST00000114487 2474 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Limch1Q3UH68 Slc12a4-201ENSMUST00000034370 3811 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Limch1Q3UH68 Endov-202ENSMUST00000106244 5070 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Limch1Q3UH68 Gm13589-201ENSMUST00000146404 1675 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Limch1Q3UH68 Mst1-201ENSMUST00000035211 2262 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Limch1Q3UH68 Cmip-201ENSMUST00000095172 2276 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Limch1Q3UH68 Lysmd4-201ENSMUST00000058771 2898 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Limch1Q3UH68 Igf2os-203ENSMUST00000141681 4778 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Limch1Q3UH68 Shmt2-206ENSMUST00000219239 2238 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Limch1Q3UH68 Cux2-210ENSMUST00000168288 4697 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
Limch1Q3UH68 Maged2-203ENSMUST00000112699 2183 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Limch1Q3UH68 Ttc3-201ENSMUST00000117648 7417 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
Limch1Q3UH68 Opa1-201ENSMUST00000038867 3230 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Limch1Q3UH68 Bscl2-201ENSMUST00000086058 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Limch1Q3UH68 Cdkn2aip-201ENSMUST00000038738 3464 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Limch1Q3UH68 Chd4-203ENSMUST00000112392 6652 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
Limch1Q3UH68 Agap1-201ENSMUST00000027521 11921 ntAPPRIS P4 TSL 1 (best) BASIC16.04■□□□□ 0.16
Limch1Q3UH68 Tsc2-221ENSMUST00000228412 5432 ntAPPRIS ALT2 BASIC16.04■□□□□ 0.16
Limch1Q3UH68 Src-202ENSMUST00000092576 3887 ntTSL 5 BASIC16.04■□□□□ 0.16
Limch1Q3UH68 Vps29-204ENSMUST00000118830 1014 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Limch1Q3UH68 Gm15393-201ENSMUST00000120499 219 ntBASIC16.04■□□□□ 0.16
Limch1Q3UH68 4933405L10Rik-202ENSMUST00000211852 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Limch1Q3UH68 Rpp21-201ENSMUST00000025319 729 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Limch1Q3UH68 Hilpda-201ENSMUST00000054445 982 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Limch1Q3UH68 Uqcr10-201ENSMUST00000058407 434 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Limch1Q3UH68 Trp53-203ENSMUST00000108658 1771 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
Limch1Q3UH68 Trp53-201ENSMUST00000005371 1772 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Limch1Q3UH68 Poli-205ENSMUST00000161542 2736 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 136.2 ms