Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Aff4-201ENSMUST00000060945 10099 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Nkx3-1P97436 Plekhn1-201ENSMUST00000105569 3014 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Nkx3-1P97436 Gigyf2-201ENSMUST00000027475 5724 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.53
Nkx3-1P97436 Lrp11-201ENSMUST00000019931 3386 ntAPPRIS P2 TSL 1 (best) BASIC11.77□□□□□ -0.53
Nkx3-1P97436 Nr2e3-201ENSMUST00000034831 2037 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Nkx3-1P97436 Tagap1-201ENSMUST00000063683 2358 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Nkx3-1P97436 Raf1-201ENSMUST00000000451 3070 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Nkx3-1P97436 Atp9b-213ENSMUST00000225980 5150 ntAPPRIS P2 BASIC11.77□□□□□ -0.53
Nkx3-1P97436 Kif17-201ENSMUST00000030539 3453 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.53
Nkx3-1P97436 Vldlr-208ENSMUST00000172302 3855 ntAPPRIS ALT1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Nkx3-1P97436 Cbs-201ENSMUST00000067801 2497 ntAPPRIS P4 TSL 1 (best) BASIC11.77□□□□□ -0.53
Nkx3-1P97436 Smtnl2-202ENSMUST00000108500 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
Nkx3-1P97436 Chodl-201ENSMUST00000023568 2535 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Nkx3-1P97436 Mypn-202ENSMUST00000218978 1833 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Nkx3-1P97436 Syt10-201ENSMUST00000029441 1845 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Nkx3-1P97436 Lzts1-201ENSMUST00000037049 1800 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Nkx3-1P97436 Vopp1-202ENSMUST00000127485 2908 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Nkx3-1P97436 Gm16534-201ENSMUST00000149300 1492 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Nkx3-1P97436 Gm5779-202ENSMUST00000219564 1477 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Nkx3-1P97436 Pdk2-201ENSMUST00000038431 2246 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Nkx3-1P97436 Tap1-206ENSMUST00000170086 2953 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
Nkx3-1P97436 Gm14379-201ENSMUST00000128858 1878 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Nkx3-1P97436 Il2rb-202ENSMUST00000163494 1894 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Nkx3-1P97436 Slc25a21-201ENSMUST00000044634 2609 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
Nkx3-1P97436 Gabrg3-202ENSMUST00000068911 9767 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Nkx3-1P97436 Ece2-201ENSMUST00000003898 3152 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
Nkx3-1P97436 Sall3-201ENSMUST00000057950 6886 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Nkx3-1P97436 Gspt2-201ENSMUST00000096368 2491 ntAPPRIS P1 BASIC11.76□□□□□ -0.53
Nkx3-1P97436 Gnas-210ENSMUST00000109095 2059 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Nkx3-1P97436 Apbb1-212ENSMUST00000189072 2085 ntTSL 5 BASIC11.76□□□□□ -0.53
Nkx3-1P97436 Dimt1-201ENSMUST00000022203 2051 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Nkx3-1P97436 Nbeal2-206ENSMUST00000133191 8782 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
Nkx3-1P97436 Cbarp-215ENSMUST00000170219 2941 ntAPPRIS P2 TSL 5 BASIC11.76□□□□□ -0.53
Nkx3-1P97436 Arl5c-202ENSMUST00000107563 823 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Nkx3-1P97436 1700061E18Rik-201ENSMUST00000154159 588 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Nkx3-1P97436 Mhrt-201ENSMUST00000181782 828 ntTSL 2 BASIC11.76□□□□□ -0.53
Nkx3-1P97436 Gm27572-201ENSMUST00000183702 255 ntBASIC11.76□□□□□ -0.53
Nkx3-1P97436 Cryaa-201ENSMUST00000019192 1176 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Nkx3-1P97436 Sox2ot-208ENSMUST00000197103 802 ntTSL 2 BASIC11.76□□□□□ -0.53
Nkx3-1P97436 Dera-204ENSMUST00000203216 688 ntTSL 5 BASIC11.76□□□□□ -0.53
Nkx3-1P97436 Wfdc1-202ENSMUST00000212901 921 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Nkx3-1P97436 AC159896.2-201ENSMUST00000214753 269 ntBASIC11.76□□□□□ -0.53
Nkx3-1P97436 AC154319.1-201ENSMUST00000216330 312 ntBASIC11.76□□□□□ -0.53
Nkx3-1P97436 Oit1-201ENSMUST00000022269 1253 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Nkx3-1P97436 AL589735.1-201ENSMUST00000224353 270 ntBASIC11.76□□□□□ -0.53
Nkx3-1P97436 Tomm7-201ENSMUST00000030851 1125 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Nkx3-1P97436 Cox7a2-201ENSMUST00000034881 659 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Nkx3-1P97436 Gm8399-201ENSMUST00000082300 1117 ntBASIC11.76□□□□□ -0.53
Nkx3-1P97436 Itgb1-201ENSMUST00000090006 3815 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Nkx3-1P97436 B230118H07Rik-202ENSMUST00000099682 895 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
Nkx3-1P97436 Hcrtr1-201ENSMUST00000030562 2187 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Nkx3-1P97436 Decr2-201ENSMUST00000040907 2187 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Nkx3-1P97436 Caprin1-201ENSMUST00000028607 6169 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Nkx3-1P97436 D6Ertd527e-204ENSMUST00000204927 2218 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
Nkx3-1P97436 Naa30-201ENSMUST00000037362 4464 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
Nkx3-1P97436 Slc4a1-201ENSMUST00000006749 4545 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Nkx3-1P97436 Ttll3-201ENSMUST00000032414 3168 ntAPPRIS P2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Nkx3-1P97436 Aip-202ENSMUST00000117831 1378 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Nkx3-1P97436 Barhl2-201ENSMUST00000086795 2314 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Nkx3-1P97436 Ints3-203ENSMUST00000196530 3778 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Nkx3-1P97436 Stox2-201ENSMUST00000079195 10467 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Nkx3-1P97436 Evc-201ENSMUST00000031005 4325 ntAPPRIS P2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Nkx3-1P97436 Gnl3-201ENSMUST00000037739 1947 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Nkx3-1P97436 Gm13730-201ENSMUST00000121036 1462 ntBASIC11.76□□□□□ -0.53
Nkx3-1P97436 Slc43a1-203ENSMUST00000111625 2487 ntAPPRIS P4 TSL 1 (best) BASIC11.76□□□□□ -0.53
Nkx3-1P97436 Iqce-202ENSMUST00000077890 2494 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Nkx3-1P97436 Grm5-204ENSMUST00000155358 4500 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Nkx3-1P97436 Dctn4-202ENSMUST00000223590 1530 ntBASIC11.76□□□□□ -0.53
Nkx3-1P97436 Las1l-202ENSMUST00000113864 2581 ntAPPRIS ALT2 TSL 5 BASIC11.75□□□□□ -0.53
Nkx3-1P97436 C230004F18Rik-203ENSMUST00000137153 2138 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Nkx3-1P97436 Slc2a6-201ENSMUST00000045702 2138 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Nkx3-1P97436 Aggf1-201ENSMUST00000022189 3249 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Nkx3-1P97436 Tmem181b-ps-203ENSMUST00000188746 1626 ntTSL 5 BASIC11.75□□□□□ -0.53
Nkx3-1P97436 Abhd6-202ENSMUST00000166497 2226 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Nkx3-1P97436 2700080J24Rik-201ENSMUST00000205314 1662 ntBASIC11.75□□□□□ -0.53
Nkx3-1P97436 Vps53-201ENSMUST00000056601 2833 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Nkx3-1P97436 Ablim1-209ENSMUST00000111546 2267 ntAPPRIS ALT2 TSL 5 BASIC11.75□□□□□ -0.53
Nkx3-1P97436 Ank1-208ENSMUST00000121075 1740 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Nkx3-1P97436 Tesmin-202ENSMUST00000127142 1714 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Nkx3-1P97436 Pde4a-202ENSMUST00000039413 4653 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
Nkx3-1P97436 Cacna2d3-201ENSMUST00000022567 3695 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Nkx3-1P97436 Lims2-201ENSMUST00000025254 1870 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Nkx3-1P97436 Edn3-201ENSMUST00000029030 3117 ntAPPRIS P2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Nkx3-1P97436 Nkx6-1-201ENSMUST00000044125 3138 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Nkx3-1P97436 Hnf1a-201ENSMUST00000031535 3191 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Nkx3-1P97436 Htr2c-203ENSMUST00000112831 809 ntTSL 3 BASIC11.75□□□□□ -0.53
Nkx3-1P97436 Nfu1-203ENSMUST00000120240 1195 ntAPPRIS P3 TSL 5 BASIC11.75□□□□□ -0.53
Nkx3-1P97436 Myadml2os-201ENSMUST00000126642 1044 ntTSL 5 BASIC11.75□□□□□ -0.53
Nkx3-1P97436 Gm27206-201ENSMUST00000154038 979 ntTSL 5 BASIC11.75□□□□□ -0.53
Nkx3-1P97436 Gm8584-201ENSMUST00000171982 758 ntBASIC11.75□□□□□ -0.53
Nkx3-1P97436 Gm8810-201ENSMUST00000172895 754 ntBASIC11.75□□□□□ -0.53
Nkx3-1P97436 1700037C18Rik-205ENSMUST00000177323 915 ntAPPRIS ALT2 TSL 5 BASIC11.75□□□□□ -0.53
Nkx3-1P97436 Gm5370-201ENSMUST00000187187 574 ntBASIC11.75□□□□□ -0.53
Nkx3-1P97436 Gm43755-201ENSMUST00000200001 408 ntTSL 5 BASIC11.75□□□□□ -0.53
Nkx3-1P97436 Sct-204ENSMUST00000211667 506 ntAPPRIS ALT2 TSL 2 BASIC11.75□□□□□ -0.53
Nkx3-1P97436 Gm36634-201ENSMUST00000218356 1259 ntTSL 3 BASIC11.75□□□□□ -0.53
Nkx3-1P97436 Net1-207ENSMUST00000223258 597 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Nkx3-1P97436 Alkbh3-201ENSMUST00000040005 1228 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Nkx3-1P97436 Rps5-201ENSMUST00000004554 761 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Nkx3-1P97436 Itgb4-203ENSMUST00000106458 5779 ntAPPRIS ALT2 TSL 5 BASIC11.75□□□□□ -0.53
Retrieved 100 of 76,532 protein–RNA pairs in 34.5 ms