Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Gm6015-201ENSMUST00000217493 1586 ntBASIC20.62■□□□□ 0.89
Cux1P53564 Pgd-201ENSMUST00000084124 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Cux1P53564 Klhl12-203ENSMUST00000116528 3277 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
Cux1P53564 Sh3bp5-202ENSMUST00000100730 2633 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Cux1P53564 Oas1f-201ENSMUST00000057814 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Cux1P53564 Gm2895-201ENSMUST00000171591 3194 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Cux1P53564 Gm14597-202ENSMUST00000129769 715 ntAPPRIS P5 TSL 3 BASIC20.61■□□□□ 0.89
Cux1P53564 4833427G06Rik-201ENSMUST00000170947 973 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Cux1P53564 2610016A17Rik-202ENSMUST00000186768 689 ntBASIC20.61■□□□□ 0.89
Cux1P53564 Rps4l-202ENSMUST00000204242 789 ntBASIC20.61■□□□□ 0.89
Cux1P53564 CT030182.1-201ENSMUST00000225935 533 ntBASIC20.61■□□□□ 0.89
Cux1P53564 Crip3-201ENSMUST00000024764 955 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Cux1P53564 Lsm7-201ENSMUST00000035775 468 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Cux1P53564 Cyb5d1-201ENSMUST00000051620 753 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Cux1P53564 Olfr156-202ENSMUST00000079465 1099 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
Cux1P53564 Mmp14-201ENSMUST00000089688 2596 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Cux1P53564 Gm29340-201ENSMUST00000188763 3854 ntBASIC20.61■□□□□ 0.89
Cux1P53564 Ralyl-206ENSMUST00000193117 2933 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
Cux1P53564 Tollip-204ENSMUST00000151890 1753 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Cux1P53564 AC167669.2-201ENSMUST00000224417 1620 ntBASIC20.6■□□□□ 0.89
Cux1P53564 AC122371.1-201ENSMUST00000220876 1477 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Cux1P53564 Scube2-203ENSMUST00000106729 3563 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Cux1P53564 Catsper3-202ENSMUST00000109898 1311 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
Cux1P53564 Osgepl1-201ENSMUST00000027265 1868 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Cux1P53564 Sox13-205ENSMUST00000153799 3693 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Cux1P53564 Gm11992-201ENSMUST00000043285 2400 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Cux1P53564 Pax7-202ENSMUST00000174681 1725 ntAPPRIS ALT1 TSL 5 BASIC20.6■□□□□ 0.89
Cux1P53564 Cstf3-201ENSMUST00000028599 2817 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Cux1P53564 Prss42-201ENSMUST00000035715 1584 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Cux1P53564 Cdc42ep1-201ENSMUST00000059619 2542 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Cux1P53564 Prpf3-201ENSMUST00000015892 2933 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Cux1P53564 Olfr56-204ENSMUST00000203149 1808 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Cux1P53564 Armcx1-206ENSMUST00000113201 2228 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
Cux1P53564 Iqcf6-201ENSMUST00000171091 537 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
Cux1P53564 Rnf141-207ENSMUST00000176716 1080 ntTSL 2 BASIC20.6■□□□□ 0.89
Cux1P53564 Gm44992-206ENSMUST00000209313 1261 ntTSL 5 BASIC20.6■□□□□ 0.89
Cux1P53564 CT025533.2-201ENSMUST00000228715 1248 ntBASIC20.6■□□□□ 0.89
Cux1P53564 Pxn-214ENSMUST00000212819 1689 ntTSL 5 BASIC20.6■□□□□ 0.89
Cux1P53564 Atp11a-201ENSMUST00000033818 7549 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Cux1P53564 Ffar2-202ENSMUST00000163504 1913 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
Cux1P53564 Sema3b-204ENSMUST00000102531 2958 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Cux1P53564 Gm8228-201ENSMUST00000189949 2192 ntBASIC20.6■□□□□ 0.89
Cux1P53564 Col18a1-202ENSMUST00000081654 5063 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Cux1P53564 AW209491-202ENSMUST00000178289 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Cux1P53564 Ephx2-201ENSMUST00000070515 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Cux1P53564 Hnrnpr-204ENSMUST00000131671 2543 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Cux1P53564 Ralgds-203ENSMUST00000113893 3683 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Cux1P53564 Gm26702-201ENSMUST00000181730 4570 ntTSL 5 BASIC20.6■□□□□ 0.89
Cux1P53564 Asic1-201ENSMUST00000023758 4114 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Cux1P53564 Kazn-201ENSMUST00000036476 3843 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Cux1P53564 Zfp747-201ENSMUST00000067425 2684 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Cux1P53564 Edem3-202ENSMUST00000187951 3115 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Cux1P53564 Slc44a3-201ENSMUST00000039197 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Cux1P53564 Cep89-201ENSMUST00000079414 2610 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Cux1P53564 Sept8-202ENSMUST00000117061 4563 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
Cux1P53564 Gm11531-201ENSMUST00000117614 555 ntBASIC20.59■□□□□ 0.89
Cux1P53564 Gm13875-201ENSMUST00000120162 282 ntBASIC20.59■□□□□ 0.89
Cux1P53564 Gm17208-201ENSMUST00000168388 535 ntBASIC20.59■□□□□ 0.89
Cux1P53564 Gm4819-201ENSMUST00000182170 1009 ntBASIC20.59■□□□□ 0.89
Cux1P53564 Gm38297-201ENSMUST00000195122 1057 ntBASIC20.59■□□□□ 0.89
Cux1P53564 Gm43068-201ENSMUST00000201095 1273 ntBASIC20.59■□□□□ 0.89
Cux1P53564 Gm5363-201ENSMUST00000211927 938 ntBASIC20.59■□□□□ 0.89
Cux1P53564 Gm9004-201ENSMUST00000218739 1222 ntBASIC20.59■□□□□ 0.89
Cux1P53564 AC167229.2-201ENSMUST00000218902 675 ntTSL 5 BASIC20.59■□□□□ 0.89
Cux1P53564 Gm16519-201ENSMUST00000092011 489 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
Cux1P53564 Plekha7-210ENSMUST00000182834 5257 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Cux1P53564 Arhgef33-201ENSMUST00000068175 3260 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
Cux1P53564 Cacnb1-201ENSMUST00000017552 3396 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Cux1P53564 Rfx7-203ENSMUST00000183372 1457 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Cux1P53564 Gm10451-201ENSMUST00000101281 1598 ntTSL 2 BASIC20.59■□□□□ 0.89
Cux1P53564 0610037L13Rik-207ENSMUST00000125107 1551 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Cux1P53564 AC139054.1-201ENSMUST00000226898 1598 ntBASIC20.59■□□□□ 0.89
Cux1P53564 Tspan32-203ENSMUST00000082008 1587 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Cux1P53564 N4bp3-201ENSMUST00000001080 2367 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Cux1P53564 Dnm1-205ENSMUST00000113365 3257 ntAPPRIS ALT1 TSL 5 BASIC20.59■□□□□ 0.89
Cux1P53564 4933431M02Rik-201ENSMUST00000203905 1432 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Cux1P53564 Cd74-202ENSMUST00000097563 1410 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Cux1P53564 Msi1-208ENSMUST00000150779 3133 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Cux1P53564 Nuak1-201ENSMUST00000020220 5558 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Cux1P53564 Aftph-201ENSMUST00000035350 3998 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
Cux1P53564 Krt71-201ENSMUST00000023710 2185 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Cux1P53564 Cmip-201ENSMUST00000095172 2276 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Cux1P53564 Gm23270-201ENSMUST00000104055 131 ntBASIC20.58■□□□□ 0.89
Cux1P53564 Rpl13-ps1-201ENSMUST00000121801 668 ntBASIC20.58■□□□□ 0.89
Cux1P53564 Tnfrsf18-203ENSMUST00000122001 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
Cux1P53564 Mb-201ENSMUST00000019037 966 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
Cux1P53564 5330425B07Rik-201ENSMUST00000196714 1027 ntBASIC20.58■□□□□ 0.89
Cux1P53564 Gm42797-201ENSMUST00000197573 494 ntTSL 3 BASIC20.58■□□□□ 0.89
Cux1P53564 Gm40437-201ENSMUST00000222338 767 ntTSL 5 BASIC20.58■□□□□ 0.89
Cux1P53564 Trex2-201ENSMUST00000033738 1017 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Cux1P53564 Tspan8-201ENSMUST00000035563 1244 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Cux1P53564 Iqgap2-201ENSMUST00000068603 5771 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Cux1P53564 Gckr-201ENSMUST00000072228 2014 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
Cux1P53564 Tpm1-209ENSMUST00000113690 2890 ntTSL 3 BASIC20.58■□□□□ 0.89
Cux1P53564 Smpd1-201ENSMUST00000046983 2412 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Cux1P53564 Dnajc25-201ENSMUST00000095070 4023 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Cux1P53564 CT009713.10-201ENSMUST00000225013 1986 ntBASIC20.58■□□□□ 0.89
Cux1P53564 Zic5-201ENSMUST00000039118 4767 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Cux1P53564 Drd5-201ENSMUST00000041646 3152 ntAPPRIS P1 BASIC20.58■□□□□ 0.88
Cux1P53564 Gtf2h5-201ENSMUST00000039487 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Retrieved 100 of 76,532 protein–RNA pairs in 80.9 ms