Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Faap100-201ENSMUST00000026448 3193 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Cdx1P18111 Gm10433-202ENSMUST00000146364 1984 ntTSL 2 BASIC11.04□□□□□ -0.64
Cdx1P18111 Chrdl1-203ENSMUST00000112878 4050 ntAPPRIS ALT2 TSL 5 BASIC11.04□□□□□ -0.64
Cdx1P18111 Tspan32-204ENSMUST00000105923 1499 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Cdx1P18111 Acat2-203ENSMUST00000159697 1800 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Cdx1P18111 4933427G23Rik-201ENSMUST00000122963 2515 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Cdx1P18111 Actr1b-201ENSMUST00000043951 3248 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Cdx1P18111 Myo10-202ENSMUST00000110457 8125 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Cdx1P18111 Mef2b-204ENSMUST00000110146 1342 ntAPPRIS P3 TSL 1 (best) BASIC11.04□□□□□ -0.64
Cdx1P18111 Phyhd1-204ENSMUST00000113645 1325 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Cdx1P18111 Sec11a-201ENSMUST00000026818 1345 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Cdx1P18111 Sbds-201ENSMUST00000026387 1548 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Cdx1P18111 Cacna1g-208ENSMUST00000107790 8035 ntAPPRIS ALT2 TSL 1 (best) BASIC11.04□□□□□ -0.64
Cdx1P18111 Fbxo8-202ENSMUST00000110322 1709 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Cdx1P18111 Selenbp1-201ENSMUST00000090839 1712 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Cdx1P18111 Selenbp2-201ENSMUST00000090848 1719 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Cdx1P18111 Shisa9-202ENSMUST00000170672 3421 ntAPPRIS P4 TSL 1 (best) BASIC11.03□□□□□ -0.64
Cdx1P18111 Clpb-211ENSMUST00000209579 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC11.03□□□□□ -0.64
Cdx1P18111 Gm2762-202ENSMUST00000201517 2339 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Cdx1P18111 Tsku-207ENSMUST00000206414 2310 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Cdx1P18111 Mpp3-204ENSMUST00000107168 3094 ntAPPRIS P1 TSL 5 BASIC11.03□□□□□ -0.64
Cdx1P18111 Tbc1d10c-201ENSMUST00000045864 1758 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Cdx1P18111 Ank3-201ENSMUST00000047061 2517 ntTSL 5 BASIC11.03□□□□□ -0.64
Cdx1P18111 Lypd1-202ENSMUST00000159417 6464 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Cdx1P18111 Gm8281-202ENSMUST00000163719 1954 ntAPPRIS P1 TSL 5 BASIC11.03□□□□□ -0.64
Cdx1P18111 Qrich2-201ENSMUST00000093909 2156 ntAPPRIS P2 TSL 1 (best) BASIC11.03□□□□□ -0.64
Cdx1P18111 Aifm3-202ENSMUST00000115685 2357 ntAPPRIS ALT1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Cdx1P18111 Ankrd42-202ENSMUST00000118157 2782 ntAPPRIS P2 TSL 1 (best) BASIC11.03□□□□□ -0.64
Cdx1P18111 Zfp467-204ENSMUST00000114559 3163 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Cdx1P18111 Ntm-203ENSMUST00000115237 2039 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Cdx1P18111 Dct-201ENSMUST00000022725 2202 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Cdx1P18111 Sbsn-201ENSMUST00000080518 2221 ntAPPRIS P3 TSL 1 (best) BASIC11.03□□□□□ -0.64
Cdx1P18111 Plxdc1-203ENSMUST00000107565 2439 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Cdx1P18111 Tnnc2-201ENSMUST00000103095 700 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Cdx1P18111 Tmsb10-203ENSMUST00000114050 570 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Cdx1P18111 Gm11453-201ENSMUST00000117318 1007 ntBASIC11.03□□□□□ -0.64
Cdx1P18111 Gm12892-201ENSMUST00000117367 1146 ntBASIC11.03□□□□□ -0.64
Cdx1P18111 9130204K15Rik-201ENSMUST00000131441 867 ntTSL 5 BASIC11.03□□□□□ -0.64
Cdx1P18111 Nup188-205ENSMUST00000138666 534 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Cdx1P18111 1700003M07Rik-202ENSMUST00000147634 564 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Cdx1P18111 Gm15758-201ENSMUST00000161681 695 ntTSL 5 BASIC11.03□□□□□ -0.64
Cdx1P18111 Gm10605-201ENSMUST00000182342 665 ntTSL 3 BASIC11.03□□□□□ -0.64
Cdx1P18111 Gm7286-201ENSMUST00000182691 1007 ntBASIC11.03□□□□□ -0.64
Cdx1P18111 Arfgap1-213ENSMUST00000184394 1209 ntAPPRIS ALT2 TSL 5 BASIC11.03□□□□□ -0.64
Cdx1P18111 1700025N23Rik-201ENSMUST00000186189 915 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Cdx1P18111 AC155252.2-201ENSMUST00000226946 680 ntBASIC11.03□□□□□ -0.64
Cdx1P18111 Erp27-201ENSMUST00000032343 1029 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Cdx1P18111 C1qtnf2-201ENSMUST00000057679 1211 ntAPPRIS P2 TSL 1 (best) BASIC11.03□□□□□ -0.64
Cdx1P18111 Eif5b-201ENSMUST00000027252 7797 ntAPPRIS P1 TSL 2 BASIC11.03□□□□□ -0.64
Cdx1P18111 Cndp2-202ENSMUST00000168419 2088 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Cdx1P18111 H2-Q6-202ENSMUST00000174699 2085 ntAPPRIS P1 TSL 5 BASIC11.03□□□□□ -0.64
Cdx1P18111 Gm37014-201ENSMUST00000194723 2253 ntBASIC11.03□□□□□ -0.64
Cdx1P18111 Cep164-201ENSMUST00000117194 5541 ntAPPRIS P2 TSL 5 BASIC11.03□□□□□ -0.64
Cdx1P18111 Prnd-203ENSMUST00000110171 1938 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Cdx1P18111 Diaph3-202ENSMUST00000168889 4582 ntAPPRIS P2 TSL 1 (best) BASIC11.03□□□□□ -0.64
Cdx1P18111 Diaph3-201ENSMUST00000022599 4582 ntAPPRIS ALT2 TSL 5 BASIC11.03□□□□□ -0.64
Cdx1P18111 Arid3b-209ENSMUST00000171444 4171 ntAPPRIS P2 TSL 5 BASIC11.03□□□□□ -0.64
Cdx1P18111 Has3-203ENSMUST00000176144 4150 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Cdx1P18111 Ccdc22-201ENSMUST00000033483 2353 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Cdx1P18111 Tspan12-202ENSMUST00000120965 2157 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Cdx1P18111 Usp13-201ENSMUST00000072312 7580 ntAPPRIS P2 TSL 1 (best) BASIC11.03□□□□□ -0.64
Cdx1P18111 Pex2-202ENSMUST00000071280 1777 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Cdx1P18111 Galnt6os-201ENSMUST00000160960 1389 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Cdx1P18111 Zeb2-202ENSMUST00000068415 5624 ntAPPRIS P2 TSL 1 (best) BASIC11.03□□□□□ -0.64
Cdx1P18111 Gm29361-201ENSMUST00000183323 2000 ntBASIC11.02□□□□□ -0.64
Cdx1P18111 Skida1-202ENSMUST00000091420 4376 ntAPPRIS P2 TSL 5 BASIC11.02□□□□□ -0.64
Cdx1P18111 Ercc2-201ENSMUST00000062831 3578 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.64
Cdx1P18111 Iba57-201ENSMUST00000054523 4021 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.64
Cdx1P18111 Arid3c-201ENSMUST00000084698 1417 ntAPPRIS P3 TSL 1 (best) BASIC11.02□□□□□ -0.64
Cdx1P18111 Pla2g6-201ENSMUST00000047816 2963 ntTSL 1 (best) BASIC11.02□□□□□ -0.64
Cdx1P18111 Zfp236-201ENSMUST00000171071 9626 ntAPPRIS P2 TSL 1 (best) BASIC11.02□□□□□ -0.64
Cdx1P18111 Rbm10-202ENSMUST00000082089 2562 ntAPPRIS ALT2 TSL 5 BASIC11.02□□□□□ -0.65
Cdx1P18111 Vcl-201ENSMUST00000022369 5267 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Cdx1P18111 Esrrb-203ENSMUST00000110204 4196 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
Cdx1P18111 Stx11-201ENSMUST00000042861 4173 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Cdx1P18111 Dlg4-204ENSMUST00000108589 3271 ntTSL 5 BASIC11.02□□□□□ -0.65
Cdx1P18111 Hdac7-202ENSMUST00000088402 4223 ntAPPRIS P3 TSL 1 (best) BASIC11.02□□□□□ -0.65
Cdx1P18111 Exoc6b-203ENSMUST00000160197 5439 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Cdx1P18111 Gm6226-201ENSMUST00000117765 1146 ntBASIC11.02□□□□□ -0.65
Cdx1P18111 Hagh-202ENSMUST00000118788 1191 ntAPPRIS P3 TSL 1 (best) BASIC11.02□□□□□ -0.65
Cdx1P18111 Gm13616-201ENSMUST00000120600 222 ntBASIC11.02□□□□□ -0.65
Cdx1P18111 Rprl2-201ENSMUST00000157150 290 ntBASIC11.02□□□□□ -0.65
Cdx1P18111 Runx2os2-201ENSMUST00000161664 818 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
Cdx1P18111 Mcee-203ENSMUST00000206194 532 ntTSL 2 BASIC11.02□□□□□ -0.65
Cdx1P18111 Gm18246-201ENSMUST00000221023 728 ntBASIC11.02□□□□□ -0.65
Cdx1P18111 Ftl1-ps1-202ENSMUST00000222435 938 ntAPPRIS P1 BASIC11.02□□□□□ -0.65
Cdx1P18111 Rnaseh2a-201ENSMUST00000065049 1006 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
Cdx1P18111 Gm10313-201ENSMUST00000095320 1002 ntBASIC11.02□□□□□ -0.65
Cdx1P18111 Stim1-201ENSMUST00000033289 4085 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Cdx1P18111 Zbtb4-202ENSMUST00000108639 7811 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Cdx1P18111 Kcnc2-204ENSMUST00000219301 2944 ntAPPRIS P2 TSL 1 (best) BASIC11.02□□□□□ -0.65
Cdx1P18111 Aarsd1-201ENSMUST00000070395 1516 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Cdx1P18111 Rasgrp4-214ENSMUST00000205027 2717 ntTSL 5 BASIC11.02□□□□□ -0.65
Cdx1P18111 Mynn-202ENSMUST00000192715 5555 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Cdx1P18111 Hadhb-203ENSMUST00000114786 2048 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Cdx1P18111 Necab1-201ENSMUST00000041606 4922 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Cdx1P18111 Elp6-205ENSMUST00000199592 1304 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Cdx1P18111 Asl-202ENSMUST00000159619 2088 ntAPPRIS P1 TSL 5 BASIC11.02□□□□□ -0.65
Cdx1P18111 Mpl-201ENSMUST00000006556 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.65
Cdx1P18111 Per1-203ENSMUST00000102605 4537 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.65
Retrieved 100 of 76,532 protein–RNA pairs in 30.1 ms