Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Slc6a19os-201ENSMUST00000022049 1532 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
Col1a1P11087 Dctn1-201ENSMUST00000077407 4118 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
Col1a1P11087 Sorcs3-201ENSMUST00000078880 5634 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Col1a1P11087 Sox17-201ENSMUST00000027035 3127 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Col1a1P11087 Me2-201ENSMUST00000025439 2455 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Col1a1P11087 Ankrd13b-202ENSMUST00000092892 3336 ntAPPRIS P2 TSL 5 BASIC15.77■□□□□ 0.11
Col1a1P11087 Fam53b-205ENSMUST00000106166 1270 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
Col1a1P11087 Gm11439-201ENSMUST00000118598 409 ntBASIC15.77■□□□□ 0.11
Col1a1P11087 Gm12012-201ENSMUST00000118857 1066 ntBASIC15.77■□□□□ 0.11
Col1a1P11087 Mrps17-205ENSMUST00000119985 859 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.11
Col1a1P11087 Ggnbp1-202ENSMUST00000122106 1107 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.11
Col1a1P11087 4933407E24Rik-201ENSMUST00000133499 969 ntTSL 2 BASIC15.77■□□□□ 0.11
Col1a1P11087 Gm5869-201ENSMUST00000200248 1257 ntBASIC15.77■□□□□ 0.11
Col1a1P11087 Odf4-201ENSMUST00000038932 1078 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Col1a1P11087 Arid1a-205ENSMUST00000145664 8187 ntAPPRIS ALT2 TSL 2 BASIC15.77■□□□□ 0.11
Col1a1P11087 Abcg8-202ENSMUST00000170725 2415 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
Col1a1P11087 Gm12500-202ENSMUST00000186471 2428 ntBASIC15.77■□□□□ 0.11
Col1a1P11087 Actc1-201ENSMUST00000090269 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Col1a1P11087 Mutyh-201ENSMUST00000102699 1654 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Col1a1P11087 Agap1-204ENSMUST00000190096 4078 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
Col1a1P11087 Psmd8-207ENSMUST00000209034 1983 ntTSL 2 BASIC15.76■□□□□ 0.11
Col1a1P11087 Zfp566-201ENSMUST00000088785 1709 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Col1a1P11087 Eif4e2-206ENSMUST00000113233 1807 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Col1a1P11087 Amhr2-201ENSMUST00000023809 1938 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Col1a1P11087 Mtif2-202ENSMUST00000093239 2741 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Col1a1P11087 Ints14-201ENSMUST00000037504 2837 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Col1a1P11087 Snx14-204ENSMUST00000165315 3109 ntAPPRIS P2 TSL 1 (best) BASIC15.76■□□□□ 0.11
Col1a1P11087 Midn-201ENSMUST00000042057 3727 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
Col1a1P11087 Tmcc3-201ENSMUST00000065060 5530 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Col1a1P11087 Rad17-202ENSMUST00000177848 2392 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Col1a1P11087 Tufm-201ENSMUST00000098048 1679 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Col1a1P11087 Lat2-205ENSMUST00000200998 1481 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Col1a1P11087 E130114P18Rik-202ENSMUST00000107068 1132 ntAPPRIS P5 TSL 3 BASIC15.76■□□□□ 0.11
Col1a1P11087 Fgf18-202ENSMUST00000109363 991 ntTSL 3 BASIC15.76■□□□□ 0.11
Col1a1P11087 Nsg2-203ENSMUST00000109409 641 ntTSL 2 BASIC15.76■□□□□ 0.11
Col1a1P11087 Qdpr-203ENSMUST00000118097 1232 ntTSL 5 BASIC15.76■□□□□ 0.11
Col1a1P11087 Gm11978-201ENSMUST00000122315 466 ntBASIC15.76■□□□□ 0.11
Col1a1P11087 Gm2260-201ENSMUST00000184965 657 ntBASIC15.76■□□□□ 0.11
Col1a1P11087 Gm32025-201ENSMUST00000217960 307 ntBASIC15.76■□□□□ 0.11
Col1a1P11087 Gm19605-202ENSMUST00000221514 1084 ntTSL 5 BASIC15.76■□□□□ 0.11
Col1a1P11087 March8-201ENSMUST00000079012 4450 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Col1a1P11087 Scg2-201ENSMUST00000049972 2515 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
Col1a1P11087 Stk38-202ENSMUST00000119274 1939 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Col1a1P11087 Drd5-201ENSMUST00000041646 3152 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
Col1a1P11087 Tpm1-209ENSMUST00000113690 2890 ntTSL 3 BASIC15.76■□□□□ 0.11
Col1a1P11087 1500009C09Rik-201ENSMUST00000136948 1526 ntAPPRIS P5 TSL 3 BASIC15.75■□□□□ 0.11
Col1a1P11087 Nectin3-202ENSMUST00000023335 9116 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
Col1a1P11087 Prkcz-201ENSMUST00000030922 2641 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Col1a1P11087 Cdr2l-201ENSMUST00000053288 3700 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Col1a1P11087 Hnrnpc-211ENSMUST00000228748 1691 ntAPPRIS P5 BASIC15.75■□□□□ 0.11
Col1a1P11087 Ttc13-210ENSMUST00000214828 3301 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
Col1a1P11087 Ccdc167-202ENSMUST00000128751 1365 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Col1a1P11087 0610010K14Rik-203ENSMUST00000100950 545 ntTSL 2 BASIC15.75■□□□□ 0.11
Col1a1P11087 Rhbdl2-202ENSMUST00000106204 1120 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
Col1a1P11087 Pigp-205ENSMUST00000113917 805 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Col1a1P11087 Ly6g6c-201ENSMUST00000173207 598 ntAPPRIS ALT2 TSL 3 BASIC15.75■□□□□ 0.11
Col1a1P11087 Ly6g6c-202ENSMUST00000173478 962 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
Col1a1P11087 Bloc1s2-ps-201ENSMUST00000183232 432 ntBASIC15.75■□□□□ 0.11
Col1a1P11087 Gm42838-201ENSMUST00000196503 439 ntTSL 5 BASIC15.75■□□□□ 0.11
Col1a1P11087 Gm44992-206ENSMUST00000209313 1261 ntTSL 5 BASIC15.75■□□□□ 0.11
Col1a1P11087 Timm9-203ENSMUST00000220482 859 ntAPPRIS P1 TSL 3 BASIC15.75■□□□□ 0.11
Col1a1P11087 Gm18615-201ENSMUST00000222919 1031 ntBASIC15.75■□□□□ 0.11
Col1a1P11087 Asb8-201ENSMUST00000059112 1049 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Col1a1P11087 Cryba2-201ENSMUST00000006721 720 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Col1a1P11087 Gm16519-201ENSMUST00000092011 489 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
Col1a1P11087 Wasf2-201ENSMUST00000084241 5642 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Col1a1P11087 Atp6ap1-201ENSMUST00000019231 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Col1a1P11087 Kdm3a-201ENSMUST00000065509 4816 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Col1a1P11087 Gpsm1-203ENSMUST00000078616 3127 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Col1a1P11087 Med15-201ENSMUST00000012259 3383 ntAPPRIS P4 TSL 1 (best) BASIC15.75■□□□□ 0.11
Col1a1P11087 Txn2-203ENSMUST00000109747 1778 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Col1a1P11087 Nupl1-207ENSMUST00000225311 2475 ntBASIC15.75■□□□□ 0.11
Col1a1P11087 Ubc-202ENSMUST00000136312 2618 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Col1a1P11087 Rtraf-201ENSMUST00000022341 1562 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Col1a1P11087 Irak1-204ENSMUST00000114352 3825 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
Col1a1P11087 Hpse-201ENSMUST00000045617 3117 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Col1a1P11087 Fbp1-201ENSMUST00000092888 1479 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Col1a1P11087 Samd4-203ENSMUST00000125113 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Col1a1P11087 Cpeb4-201ENSMUST00000020543 2312 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Col1a1P11087 Slc35e2-201ENSMUST00000043829 2910 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Col1a1P11087 Acp5-203ENSMUST00000165735 1376 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Col1a1P11087 Gosr2-202ENSMUST00000107013 1044 ntTSL 2 BASIC15.74■□□□□ 0.11
Col1a1P11087 Clic3-202ENSMUST00000114265 808 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Col1a1P11087 C330007P06Rik-203ENSMUST00000115249 1145 ntTSL 5 BASIC15.74■□□□□ 0.11
Col1a1P11087 Gm8738-201ENSMUST00000172606 329 ntBASIC15.74■□□□□ 0.11
Col1a1P11087 Tmem267-202ENSMUST00000176171 880 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
Col1a1P11087 Gm27341-201ENSMUST00000183570 106 ntBASIC15.74■□□□□ 0.11
Col1a1P11087 Gm37986-201ENSMUST00000193285 383 ntBASIC15.74■□□□□ 0.11
Col1a1P11087 Gm38979-201ENSMUST00000207099 698 ntTSL 3 BASIC15.74■□□□□ 0.11
Col1a1P11087 Gm13097-201ENSMUST00000210722 397 ntBASIC15.74■□□□□ 0.11
Col1a1P11087 Kdelr1-203ENSMUST00000211234 832 ntTSL 2 BASIC15.74■□□□□ 0.11
Col1a1P11087 AC069562.3-201ENSMUST00000225387 587 ntBASIC15.74■□□□□ 0.11
Col1a1P11087 Eef1d-203ENSMUST00000089680 973 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Col1a1P11087 Cldn18-204ENSMUST00000136429 1409 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Col1a1P11087 Glod4-201ENSMUST00000017430 1434 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Col1a1P11087 Smtnl2-202ENSMUST00000108500 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Col1a1P11087 Chodl-203ENSMUST00000114216 1550 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Col1a1P11087 Stk40-202ENSMUST00000116286 3860 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Col1a1P11087 Pbx2-203ENSMUST00000173328 1990 ntTSL 2 BASIC15.74■□□□□ 0.11
Col1a1P11087 Sppl2b-201ENSMUST00000035597 2869 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Retrieved 100 of 76,532 protein–RNA pairs in 27.1 ms