Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Trim71-201ENSMUST00000111816 9332 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Col3a1P08121 Gm16244-201ENSMUST00000159313 2327 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Col3a1P08121 Gm2420-202ENSMUST00000202224 2249 ntBASIC16.08■□□□□ 0.16
Col3a1P08121 Gm6203-201ENSMUST00000209575 1342 ntBASIC16.08■□□□□ 0.16
Col3a1P08121 Pgr-201ENSMUST00000070463 3068 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Col3a1P08121 Pgr-202ENSMUST00000098986 3068 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Col3a1P08121 Slc34a3-201ENSMUST00000006638 2183 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Col3a1P08121 Gm6161-201ENSMUST00000121942 1102 ntBASIC16.08■□□□□ 0.16
Col3a1P08121 Gm13786-201ENSMUST00000122371 333 ntBASIC16.08■□□□□ 0.16
Col3a1P08121 4930579D09Rik-201ENSMUST00000132321 469 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Col3a1P08121 Hnrnpa3-207ENSMUST00000164947 1074 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
Col3a1P08121 Gm6254-201ENSMUST00000168178 1072 ntBASIC16.08■□□□□ 0.16
Col3a1P08121 Cd180-203ENSMUST00000170878 842 ntTSL 3 BASIC16.08■□□□□ 0.16
Col3a1P08121 Gm6153-201ENSMUST00000172004 1058 ntBASIC16.08■□□□□ 0.16
Col3a1P08121 Cd180-205ENSMUST00000172138 518 ntTSL 2 BASIC16.08■□□□□ 0.16
Col3a1P08121 Gm9242-201ENSMUST00000177820 1074 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
Col3a1P08121 Gm5641-202ENSMUST00000198699 1080 ntBASIC16.08■□□□□ 0.16
Col3a1P08121 Svip-203ENSMUST00000209193 487 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Col3a1P08121 Sema6d-201ENSMUST00000051419 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Col3a1P08121 Sqle-201ENSMUST00000022977 2758 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Col3a1P08121 Usp6nl-202ENSMUST00000114937 7484 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Col3a1P08121 Edil3-203ENSMUST00000118731 2721 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Col3a1P08121 Gtf3c5-202ENSMUST00000113889 2667 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Col3a1P08121 Chrna4-201ENSMUST00000067120 4565 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Col3a1P08121 Rnf139-201ENSMUST00000036904 4348 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Col3a1P08121 Scfd2-203ENSMUST00000113542 2279 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Col3a1P08121 Mettl17-206ENSMUST00000164902 1461 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
Col3a1P08121 Hnf4a-202ENSMUST00000109411 4362 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Col3a1P08121 Slc16a9-201ENSMUST00000046807 3756 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Col3a1P08121 Ephx2-201ENSMUST00000070515 2035 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Col3a1P08121 Tle1-202ENSMUST00000072695 3644 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Col3a1P08121 Pgm2-201ENSMUST00000058351 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Col3a1P08121 Nipsnap3b-202ENSMUST00000107665 848 ntTSL 2 BASIC16.07■□□□□ 0.16
Col3a1P08121 Fgf18-202ENSMUST00000109363 991 ntTSL 3 BASIC16.07■□□□□ 0.16
Col3a1P08121 Tmem219-203ENSMUST00000120007 1087 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Col3a1P08121 Creb3-206ENSMUST00000167751 1212 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
Col3a1P08121 Gm5896-201ENSMUST00000189662 1024 ntBASIC16.07■□□□□ 0.16
Col3a1P08121 Gm37042-201ENSMUST00000193816 581 ntBASIC16.07■□□□□ 0.16
Col3a1P08121 Gm38158-201ENSMUST00000194617 339 ntBASIC16.07■□□□□ 0.16
Col3a1P08121 Crip2-206ENSMUST00000200380 864 ntTSL 3 BASIC16.07■□□□□ 0.16
Col3a1P08121 9430007M09Rik-201ENSMUST00000201947 804 ntBASIC16.07■□□□□ 0.16
Col3a1P08121 Gm3961-201ENSMUST00000204425 994 ntBASIC16.07■□□□□ 0.16
Col3a1P08121 Olfr284-202ENSMUST00000206647 966 ntBASIC16.07■□□□□ 0.16
Col3a1P08121 Tpd52l1-205ENSMUST00000215515 857 ntTSL 2 BASIC16.07■□□□□ 0.16
Col3a1P08121 AC160029.2-201ENSMUST00000218285 548 ntTSL 3 BASIC16.07■□□□□ 0.16
Col3a1P08121 AC140406.1-201ENSMUST00000226481 465 ntBASIC16.07■□□□□ 0.16
Col3a1P08121 Arhgef1-203ENSMUST00000117419 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Col3a1P08121 Gucy1a2-201ENSMUST00000115733 2243 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
Col3a1P08121 Tada3-202ENSMUST00000043333 1708 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Col3a1P08121 Ano8-201ENSMUST00000093450 3653 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Col3a1P08121 Tufm-201ENSMUST00000098048 1679 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Col3a1P08121 Gm14752-201ENSMUST00000120719 2075 ntBASIC16.07■□□□□ 0.16
Col3a1P08121 Tmcc3-201ENSMUST00000065060 5530 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Col3a1P08121 Rad54b-202ENSMUST00000095145 2403 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Col3a1P08121 Gm5124-201ENSMUST00000127554 1970 ntTSL 5 BASIC16.07■□□□□ 0.16
Col3a1P08121 Kansl2-ps-201ENSMUST00000181818 1461 ntBASIC16.06■□□□□ 0.16
Col3a1P08121 Cab39-202ENSMUST00000113360 3805 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Col3a1P08121 1700037C18Rik-202ENSMUST00000115859 2592 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Col3a1P08121 Wwox-203ENSMUST00000109108 1771 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Col3a1P08121 Ccdc167-202ENSMUST00000128751 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Col3a1P08121 Mcoln2-201ENSMUST00000011152 2520 ntAPPRIS P4 TSL 1 (best) BASIC16.06■□□□□ 0.16
Col3a1P08121 Psmd11-201ENSMUST00000017572 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Col3a1P08121 Cox4i2-201ENSMUST00000010020 727 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Col3a1P08121 Pole-203ENSMUST00000112482 747 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Col3a1P08121 Gm9431-201ENSMUST00000119765 1051 ntBASIC16.06■□□□□ 0.16
Col3a1P08121 Ablim2-213ENSMUST00000150146 415 ntTSL 2 BASIC16.06■□□□□ 0.16
Col3a1P08121 Gm12315-201ENSMUST00000151599 911 ntTSL 3 BASIC16.06■□□□□ 0.16
Col3a1P08121 Gm12349-201ENSMUST00000153030 657 ntTSL 3 BASIC16.06■□□□□ 0.16
Col3a1P08121 Gm3890-201ENSMUST00000182416 207 ntBASIC16.06■□□□□ 0.16
Col3a1P08121 Tmem116-201ENSMUST00000031405 1288 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Col3a1P08121 Bag6-202ENSMUST00000166426 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Col3a1P08121 Gria4-203ENSMUST00000163309 2338 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Col3a1P08121 Lnx1-205ENSMUST00000117525 2259 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Col3a1P08121 Gm11405-201ENSMUST00000118689 1556 ntBASIC16.06■□□□□ 0.16
Col3a1P08121 Medag-201ENSMUST00000093110 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Col3a1P08121 Jazf1-201ENSMUST00000074541 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Col3a1P08121 Ptprn2-201ENSMUST00000070733 3201 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Col3a1P08121 Atp11b-201ENSMUST00000029257 4868 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Col3a1P08121 Slc8a3-203ENSMUST00000182208 3433 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
Col3a1P08121 Arhgap44-203ENSMUST00000093002 3982 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
Col3a1P08121 Barhl2-201ENSMUST00000086795 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Col3a1P08121 Hnrnpm-202ENSMUST00000114385 2550 ntTSL 2 BASIC16.05■□□□□ 0.16
Col3a1P08121 Gpr4-201ENSMUST00000060225 2882 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Col3a1P08121 Xkr5-202ENSMUST00000095438 2838 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Col3a1P08121 Gm5106-201ENSMUST00000181058 1334 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Col3a1P08121 Gm8793-201ENSMUST00000183069 1303 ntBASIC16.05■□□□□ 0.16
Col3a1P08121 Pfkfb3-212ENSMUST00000170196 2163 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Col3a1P08121 Togaram2-205ENSMUST00000153445 3302 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
Col3a1P08121 Snord83b-201ENSMUST00000104546 94 ntBASIC16.05■□□□□ 0.16
Col3a1P08121 Gm12167-201ENSMUST00000148132 578 ntTSL 2 BASIC16.05■□□□□ 0.16
Col3a1P08121 Egfl7-211ENSMUST00000152988 723 ntTSL 2 BASIC16.05■□□□□ 0.16
Col3a1P08121 1700120C18Rik-201ENSMUST00000182952 985 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Col3a1P08121 3830422I06Rik-201ENSMUST00000200199 1181 ntBASIC16.05■□□□□ 0.16
Col3a1P08121 Il15-202ENSMUST00000209363 1251 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Col3a1P08121 Gm32025-201ENSMUST00000217960 307 ntBASIC16.05■□□□□ 0.16
Col3a1P08121 Mrap-201ENSMUST00000038197 1001 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Col3a1P08121 Polr2e-201ENSMUST00000004786 1148 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Col3a1P08121 Gm17383-201ENSMUST00000078739 1041 ntBASIC16.05■□□□□ 0.16
Col3a1P08121 Olfr12-201ENSMUST00000081274 1121 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
Col3a1P08121 Wwox-202ENSMUST00000109107 2383 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 50.2 ms