Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Tmc8-202ENSMUST00000106334 2644 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Trim54Q9ERP3 Leng8-202ENSMUST00000117274 874 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Trim54Q9ERP3 Gm14660-201ENSMUST00000119809 575 ntBASIC14.78□□□□□ -0.04
Trim54Q9ERP3 Gm13834-201ENSMUST00000123757 137 ntTSL 3 BASIC14.78□□□□□ -0.04
Trim54Q9ERP3 Gm15420-201ENSMUST00000133274 382 ntTSL 3 BASIC14.78□□□□□ -0.04
Trim54Q9ERP3 Egfl7-208ENSMUST00000149789 683 ntTSL 3 BASIC14.78□□□□□ -0.04
Trim54Q9ERP3 Gm20652-201ENSMUST00000177314 383 ntTSL 2 BASIC14.78□□□□□ -0.04
Trim54Q9ERP3 Gm9299-201ENSMUST00000206392 1140 ntBASIC14.78□□□□□ -0.04
Trim54Q9ERP3 Haus7-202ENSMUST00000077243 1032 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Trim54Q9ERP3 Gm24447-201ENSMUST00000083977 338 ntBASIC14.78□□□□□ -0.04
Trim54Q9ERP3 Tpr-201ENSMUST00000119161 7480 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
Trim54Q9ERP3 4921514A10Rik-201ENSMUST00000181450 2114 ntTSL 5 BASIC14.78□□□□□ -0.04
Trim54Q9ERP3 Cflar-204ENSMUST00000114309 2010 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Trim54Q9ERP3 Caprin2-201ENSMUST00000072324 2952 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
Trim54Q9ERP3 Ulk1-211ENSMUST00000200299 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Trim54Q9ERP3 Sesn1-201ENSMUST00000041438 2600 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
Trim54Q9ERP3 Car3-201ENSMUST00000029076 1679 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Trim54Q9ERP3 Grin3a-202ENSMUST00000093859 7491 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Trim54Q9ERP3 Pam-201ENSMUST00000058762 4095 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
Trim54Q9ERP3 Gm37297-201ENSMUST00000192974 2384 ntBASIC14.77□□□□□ -0.04
Trim54Q9ERP3 Igsf5-202ENSMUST00000081093 1554 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Trim54Q9ERP3 C130050O18Rik-201ENSMUST00000052176 1532 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Trim54Q9ERP3 Gm16534-201ENSMUST00000149300 1492 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Trim54Q9ERP3 Evx1os-201ENSMUST00000125305 2916 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Trim54Q9ERP3 Col9a2-201ENSMUST00000030372 2924 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Trim54Q9ERP3 Sntb2-203ENSMUST00000212524 9945 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.04
Trim54Q9ERP3 Gm9200-201ENSMUST00000118513 1354 ntBASIC14.77□□□□□ -0.04
Trim54Q9ERP3 F10-204ENSMUST00000128418 1395 ntTSL 5 BASIC14.77□□□□□ -0.04
Trim54Q9ERP3 Clptm1-201ENSMUST00000055242 4143 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Trim54Q9ERP3 Slc35c2-204ENSMUST00000109300 2008 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Trim54Q9ERP3 Glyr1-202ENSMUST00000115844 3348 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Trim54Q9ERP3 Glyr1-201ENSMUST00000023189 3330 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Trim54Q9ERP3 Lats2-210ENSMUST00000174694 3287 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.04
Trim54Q9ERP3 Rasl12-202ENSMUST00000165682 1903 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Trim54Q9ERP3 Rpl9-203ENSMUST00000120094 680 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.05
Trim54Q9ERP3 Ccdc70-201ENSMUST00000017193 1054 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Trim54Q9ERP3 Grp-202ENSMUST00000173530 617 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.05
Trim54Q9ERP3 Gm26721-201ENSMUST00000181723 992 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Trim54Q9ERP3 4933434E20Rik-202ENSMUST00000029552 1080 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Trim54Q9ERP3 Olfr222-201ENSMUST00000071943 1115 ntAPPRIS P1 BASIC14.77□□□□□ -0.05
Trim54Q9ERP3 Tmem256-201ENSMUST00000094065 492 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Trim54Q9ERP3 Ece2-201ENSMUST00000003898 3152 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
Trim54Q9ERP3 Sgce-204ENSMUST00000115577 1776 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Trim54Q9ERP3 Etl4-207ENSMUST00000114610 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
Trim54Q9ERP3 Tesmin-202ENSMUST00000127142 1714 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
Trim54Q9ERP3 Nop58-201ENSMUST00000027174 1713 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.05
Trim54Q9ERP3 Gpr155-202ENSMUST00000076463 5061 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
Trim54Q9ERP3 2700080J24Rik-201ENSMUST00000205314 1662 ntBASIC14.77□□□□□ -0.05
Trim54Q9ERP3 Zkscan14-203ENSMUST00000198959 2243 ntBASIC14.77□□□□□ -0.05
Trim54Q9ERP3 Dixdc1-202ENSMUST00000117093 1613 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Trim54Q9ERP3 Camsap2-202ENSMUST00000192001 6329 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
Trim54Q9ERP3 AU040320-202ENSMUST00000102607 4191 ntAPPRIS P4 TSL 1 (best) BASIC14.77□□□□□ -0.05
Trim54Q9ERP3 Usp16-202ENSMUST00000119504 2562 ntTSL 5 BASIC14.77□□□□□ -0.05
Trim54Q9ERP3 Chodl-201ENSMUST00000023568 2535 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Trim54Q9ERP3 Osbpl11-201ENSMUST00000039733 4520 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Trim54Q9ERP3 Zbp1-201ENSMUST00000029018 1989 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Trim54Q9ERP3 Glmn-202ENSMUST00000082121 1945 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Trim54Q9ERP3 Nek7-202ENSMUST00000186017 5258 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Trim54Q9ERP3 Edc4-201ENSMUST00000040254 4780 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Trim54Q9ERP3 Rspry1-207ENSMUST00000212729 2800 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Trim54Q9ERP3 Fam214b-202ENSMUST00000107956 3107 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
Trim54Q9ERP3 Ylpm1-207ENSMUST00000168977 4893 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
Trim54Q9ERP3 Gm13050-201ENSMUST00000122149 1345 ntBASIC14.76□□□□□ -0.05
Trim54Q9ERP3 Scarf1-202ENSMUST00000118243 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Trim54Q9ERP3 Kmt5c-203ENSMUST00000108583 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Trim54Q9ERP3 Btbd10-201ENSMUST00000047091 2581 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Trim54Q9ERP3 Ptdss1-201ENSMUST00000021990 3424 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Trim54Q9ERP3 1700061E18Rik-201ENSMUST00000154159 588 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Trim54Q9ERP3 Mir6420-201ENSMUST00000185032 102 ntBASIC14.76□□□□□ -0.05
Trim54Q9ERP3 Gm29127-201ENSMUST00000188304 517 ntBASIC14.76□□□□□ -0.05
Trim54Q9ERP3 Gm42442-201ENSMUST00000197951 1133 ntBASIC14.76□□□□□ -0.05
Trim54Q9ERP3 Tgif2-ps1-201ENSMUST00000203590 713 ntBASIC14.76□□□□□ -0.05
Trim54Q9ERP3 Tmem54-202ENSMUST00000030577 988 ntAPPRIS ALT2 TSL 3 BASIC14.76□□□□□ -0.05
Trim54Q9ERP3 Isg20-201ENSMUST00000038142 1083 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Trim54Q9ERP3 Atpif1-201ENSMUST00000067496 539 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Trim54Q9ERP3 Stt3b-201ENSMUST00000035010 4221 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Trim54Q9ERP3 Cxadr-202ENSMUST00000114229 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Trim54Q9ERP3 Pnkd-201ENSMUST00000027370 2937 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Trim54Q9ERP3 Ly9-201ENSMUST00000004827 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Trim54Q9ERP3 4931428F04Rik-203ENSMUST00000212219 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Trim54Q9ERP3 Rab9b-201ENSMUST00000058814 3980 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Trim54Q9ERP3 Snx14-204ENSMUST00000165315 3109 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Trim54Q9ERP3 Krit1-211ENSMUST00000200386 2343 ntTSL 5 BASIC14.76□□□□□ -0.05
Trim54Q9ERP3 Cep170b-204ENSMUST00000220627 5395 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Trim54Q9ERP3 Ube3a-201ENSMUST00000107537 4911 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Trim54Q9ERP3 Mocs2-208ENSMUST00000166176 1855 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Trim54Q9ERP3 Lims2-201ENSMUST00000025254 1870 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Trim54Q9ERP3 Brsk2-204ENSMUST00000105989 2149 ntAPPRIS P4 TSL 5 BASIC14.75□□□□□ -0.05
Trim54Q9ERP3 Zfp628-201ENSMUST00000116354 3523 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Trim54Q9ERP3 Aptx-201ENSMUST00000030119 5250 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Trim54Q9ERP3 Gpsm1-203ENSMUST00000078616 3127 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Trim54Q9ERP3 Rbmx2-201ENSMUST00000033433 1747 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Trim54Q9ERP3 Aip-202ENSMUST00000117831 1378 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Trim54Q9ERP3 Creld2-201ENSMUST00000024042 1364 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Trim54Q9ERP3 Zcchc3-201ENSMUST00000099207 3073 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
Trim54Q9ERP3 Gm43399-201ENSMUST00000202546 2374 ntBASIC14.75□□□□□ -0.05
Trim54Q9ERP3 Med15-201ENSMUST00000012259 3383 ntAPPRIS P4 TSL 1 (best) BASIC14.75□□□□□ -0.05
Trim54Q9ERP3 Gm12404-201ENSMUST00000122839 1661 ntTSL 5 BASIC14.75□□□□□ -0.05
Trim54Q9ERP3 Slc25a54-201ENSMUST00000029478 1673 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Trim54Q9ERP3 Cc2d1b-201ENSMUST00000030320 3303 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Retrieved 100 of 76,532 protein–RNA pairs in 26.8 ms