Protein–RNA interactions for Protein: Q9CQ71

Rpa3, Replication protein A 14 kDa subunit, mousemouse

Predictions only

Length 121 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rpa3Q9CQ71 Ska1-201ENSMUST00000040188 2669 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Rpa3Q9CQ71 Cep85-201ENSMUST00000040271 3893 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.09
Rpa3Q9CQ71 Higd1a-205ENSMUST00000215007 1980 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Rpa3Q9CQ71 Pdpn-202ENSMUST00000119654 762 ntAPPRIS ALT2 TSL 3 BASIC14.46□□□□□ -0.09
Rpa3Q9CQ71 Vps53-204ENSMUST00000129256 650 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Rpa3Q9CQ71 Gm12212-201ENSMUST00000141032 378 ntTSL 3 BASIC14.46□□□□□ -0.09
Rpa3Q9CQ71 Gm14493-201ENSMUST00000141174 543 ntTSL 5 BASIC14.46□□□□□ -0.09
Rpa3Q9CQ71 Gm16215-201ENSMUST00000161990 637 ntBASIC14.46□□□□□ -0.09
Rpa3Q9CQ71 Gm27772-201ENSMUST00000184900 187 ntBASIC14.46□□□□□ -0.09
Rpa3Q9CQ71 Gm33045-202ENSMUST00000210049 975 ntTSL 5 BASIC14.46□□□□□ -0.09
Rpa3Q9CQ71 AC158987.1-201ENSMUST00000214586 961 ntTSL 5 BASIC14.46□□□□□ -0.09
Rpa3Q9CQ71 Gm18934-201ENSMUST00000216671 1044 ntBASIC14.46□□□□□ -0.09
Rpa3Q9CQ71 AC139580.1-202ENSMUST00000223574 928 ntBASIC14.46□□□□□ -0.09
Rpa3Q9CQ71 Hist1h2al-201ENSMUST00000091708 339 ntBASIC14.46□□□□□ -0.09
Rpa3Q9CQ71 Tmem139-201ENSMUST00000095987 1147 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
Rpa3Q9CQ71 Trim27-206ENSMUST00000222544 4312 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
Rpa3Q9CQ71 Rbm42-201ENSMUST00000042726 1784 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.09
Rpa3Q9CQ71 AC168058.1-201ENSMUST00000219521 2282 ntBASIC14.46□□□□□ -0.09
Rpa3Q9CQ71 Nr4a2-203ENSMUST00000112629 3422 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
Rpa3Q9CQ71 Pcgf5-211ENSMUST00000225920 6443 ntBASIC14.46□□□□□ -0.09
Rpa3Q9CQ71 Sall3-201ENSMUST00000057950 6886 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Rpa3Q9CQ71 Pfkfb3-203ENSMUST00000100411 2008 ntTSL 5 BASIC14.46□□□□□ -0.1
Rpa3Q9CQ71 Usp19-201ENSMUST00000006854 4791 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.1
Rpa3Q9CQ71 Serpinh1-205ENSMUST00000208119 2173 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Rpa3Q9CQ71 Pcna-201ENSMUST00000028817 1518 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Rpa3Q9CQ71 E130317F20Rik-202ENSMUST00000217802 3420 ntBASIC14.46□□□□□ -0.1
Rpa3Q9CQ71 Ints3-202ENSMUST00000071488 4038 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Rpa3Q9CQ71 1300017J02Rik-201ENSMUST00000035163 2284 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Rpa3Q9CQ71 Mgat1-202ENSMUST00000101293 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Rpa3Q9CQ71 Dysf-214ENSMUST00000204354 6432 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
Rpa3Q9CQ71 Zfp647-201ENSMUST00000048854 1608 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Rpa3Q9CQ71 Trim15-203ENSMUST00000174195 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Rpa3Q9CQ71 Acot6-202ENSMUST00000222921 3622 ntBASIC14.45□□□□□ -0.1
Rpa3Q9CQ71 Kcnq2-208ENSMUST00000103051 4200 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
Rpa3Q9CQ71 Ift52-201ENSMUST00000018002 2248 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Rpa3Q9CQ71 Klhl32-204ENSMUST00000108218 7143 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
Rpa3Q9CQ71 Ccdc69-202ENSMUST00000108880 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Rpa3Q9CQ71 Gm13859-201ENSMUST00000119936 1423 ntBASIC14.45□□□□□ -0.1
Rpa3Q9CQ71 Sec22b-203ENSMUST00000130620 640 ntTSL 2 BASIC14.45□□□□□ -0.1
Rpa3Q9CQ71 Flt3l-201ENSMUST00000146760 1075 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Rpa3Q9CQ71 4933435F18Rik-202ENSMUST00000154878 2174 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Rpa3Q9CQ71 Prr29-203ENSMUST00000185986 983 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
Rpa3Q9CQ71 Atp6ap1-201ENSMUST00000019231 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Rpa3Q9CQ71 Inpp4a-213ENSMUST00000193774 1243 ntTSL 5 BASIC14.45□□□□□ -0.1
Rpa3Q9CQ71 1700028E10Rik-205ENSMUST00000202024 924 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Rpa3Q9CQ71 Fgd6-201ENSMUST00000020208 8044 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Rpa3Q9CQ71 Snapc2-203ENSMUST00000208316 1190 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Rpa3Q9CQ71 Pcdhga8-201ENSMUST00000066149 4730 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Rpa3Q9CQ71 Mff-201ENSMUST00000073025 1706 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Rpa3Q9CQ71 Sun1-202ENSMUST00000078690 2608 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
Rpa3Q9CQ71 Ssh3-202ENSMUST00000113852 2735 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Rpa3Q9CQ71 Ssh3-201ENSMUST00000037992 2728 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Rpa3Q9CQ71 Usp16-202ENSMUST00000119504 2562 ntTSL 5 BASIC14.45□□□□□ -0.1
Rpa3Q9CQ71 Cacna1b-205ENSMUST00000114447 6987 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
Rpa3Q9CQ71 Bcl11b-201ENSMUST00000066060 8111 ntAPPRIS P4 TSL 1 (best) BASIC14.45□□□□□ -0.1
Rpa3Q9CQ71 Cit-203ENSMUST00000112008 6087 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
Rpa3Q9CQ71 Plch2-208ENSMUST00000145662 1818 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Rpa3Q9CQ71 Ecsit-201ENSMUST00000098937 1673 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Rpa3Q9CQ71 Hmx2-201ENSMUST00000051997 3102 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Rpa3Q9CQ71 Gars-201ENSMUST00000003572 2380 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Rpa3Q9CQ71 Gucd1-201ENSMUST00000039796 3500 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Rpa3Q9CQ71 Tmem2-202ENSMUST00000096194 6667 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
Rpa3Q9CQ71 Nt5c2-202ENSMUST00000168536 3769 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Rpa3Q9CQ71 Gtf2a1l-201ENSMUST00000024970 1621 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Rpa3Q9CQ71 Exoc6b-203ENSMUST00000160197 5439 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Rpa3Q9CQ71 Csk-209ENSMUST00000217314 2162 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Rpa3Q9CQ71 Nxpe5-202ENSMUST00000159798 2568 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Rpa3Q9CQ71 Cbs-202ENSMUST00000078509 2403 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Rpa3Q9CQ71 Rab18-201ENSMUST00000097680 2257 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Rpa3Q9CQ71 Adarb1-201ENSMUST00000020496 6549 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Rpa3Q9CQ71 Larp1b-205ENSMUST00000191805 1581 ntAPPRIS P2 TSL 5 BASIC14.44□□□□□ -0.1
Rpa3Q9CQ71 Ptx4-201ENSMUST00000054930 1582 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Rpa3Q9CQ71 Gm42872-201ENSMUST00000200026 1967 ntBASIC14.44□□□□□ -0.1
Rpa3Q9CQ71 B3gat1-206ENSMUST00000161431 3858 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
Rpa3Q9CQ71 Tmtc3-202ENSMUST00000099318 2794 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
Rpa3Q9CQ71 Sall4-201ENSMUST00000029061 5073 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Rpa3Q9CQ71 Dnmt3b-206ENSMUST00000103151 3956 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Rpa3Q9CQ71 B230359F08Rik-201ENSMUST00000103671 426 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
Rpa3Q9CQ71 Pmvk-202ENSMUST00000107410 652 ntTSL 5 BASIC14.44□□□□□ -0.1
Rpa3Q9CQ71 Rnaseh2a-206ENSMUST00000128972 1141 ntTSL 2 BASIC14.44□□□□□ -0.1
Rpa3Q9CQ71 Gm26830-201ENSMUST00000180389 993 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Rpa3Q9CQ71 Mir6977-201ENSMUST00000184960 64 ntBASIC14.44□□□□□ -0.1
Rpa3Q9CQ71 Prrg2-207ENSMUST00000210500 922 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
Rpa3Q9CQ71 AC125206.2-201ENSMUST00000217454 574 ntBASIC14.44□□□□□ -0.1
Rpa3Q9CQ71 AC124732.1-201ENSMUST00000221551 910 ntBASIC14.44□□□□□ -0.1
Rpa3Q9CQ71 Tmem179-202ENSMUST00000222836 521 ntTSL 5 BASIC14.44□□□□□ -0.1
Rpa3Q9CQ71 AC131997.1-201ENSMUST00000228611 1229 ntBASIC14.44□□□□□ -0.1
Rpa3Q9CQ71 Erp27-201ENSMUST00000032343 1029 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Rpa3Q9CQ71 Hist1h3b-201ENSMUST00000091703 620 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
Rpa3Q9CQ71 Unc119b-201ENSMUST00000060798 3659 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Rpa3Q9CQ71 Tfe3-211ENSMUST00000137467 3390 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Rpa3Q9CQ71 Lrrc17-201ENSMUST00000035651 2154 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Rpa3Q9CQ71 Arhgef1-203ENSMUST00000117419 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Rpa3Q9CQ71 Tspyl5-201ENSMUST00000042021 4010 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
Rpa3Q9CQ71 Rnf10-203ENSMUST00000112097 3476 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Rpa3Q9CQ71 4933430H06Rik-201ENSMUST00000200924 1343 ntBASIC14.43□□□□□ -0.1
Rpa3Q9CQ71 Kcnh2-201ENSMUST00000036092 4221 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Rpa3Q9CQ71 Bmp4-201ENSMUST00000074077 2064 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Rpa3Q9CQ71 Slc19a2-202ENSMUST00000159230 3432 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Rpa3Q9CQ71 Mecp2-203ENSMUST00000123362 1675 ntTSL 5 BASIC14.43□□□□□ -0.1
Retrieved 100 of 76,532 protein–RNA pairs in 54.5 ms