Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Cep85l-205ENSMUST00000220443 7425 ntAPPRIS P2 TSL 5 BASIC18.64■□□□□ 0.58
Usp40Q8BWR4 Pcolce2-201ENSMUST00000015498 4438 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Usp40Q8BWR4 Zfp90-203ENSMUST00000212606 2685 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Usp40Q8BWR4 N6amt1-203ENSMUST00000118310 1700 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Usp40Q8BWR4 Vcan-205ENSMUST00000159337 2273 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Usp40Q8BWR4 Txn2-202ENSMUST00000100486 676 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Usp40Q8BWR4 Mrpl40-202ENSMUST00000119273 778 ntTSL 3 BASIC18.64■□□□□ 0.57
Usp40Q8BWR4 Pla2g10os-201ENSMUST00000141172 174 ntTSL 5 BASIC18.64■□□□□ 0.57
Usp40Q8BWR4 9330198N18Rik-201ENSMUST00000146702 1247 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Usp40Q8BWR4 Nudt17-202ENSMUST00000171249 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Usp40Q8BWR4 Gm7029-201ENSMUST00000173226 450 ntBASIC18.64■□□□□ 0.57
Usp40Q8BWR4 2610300A13Rik-201ENSMUST00000192930 503 ntBASIC18.64■□□□□ 0.57
Usp40Q8BWR4 C030018K13Rik-202ENSMUST00000196829 712 ntTSL 3 BASIC18.64■□□□□ 0.57
Usp40Q8BWR4 Gm9803-202ENSMUST00000216543 456 ntTSL 5 BASIC18.64■□□□□ 0.57
Usp40Q8BWR4 Nkiras2-202ENSMUST00000051947 831 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Usp40Q8BWR4 Ist1-201ENSMUST00000034164 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Usp40Q8BWR4 Cyp2f2-201ENSMUST00000003100 1866 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Usp40Q8BWR4 Wfdc1-201ENSMUST00000024107 1371 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Usp40Q8BWR4 Pde1c-203ENSMUST00000164037 3068 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Usp40Q8BWR4 Nell1-201ENSMUST00000081872 6617 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Usp40Q8BWR4 Gpr12-203ENSMUST00000197431 1455 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Usp40Q8BWR4 Mid2-202ENSMUST00000112990 6271 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
Usp40Q8BWR4 Sfta3-ps-201ENSMUST00000218376 2128 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Usp40Q8BWR4 Adam23-201ENSMUST00000087374 6426 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Usp40Q8BWR4 Pcdha3-201ENSMUST00000192503 5332 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Usp40Q8BWR4 Gm17705-201ENSMUST00000172285 1555 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Usp40Q8BWR4 Srsf10-204ENSMUST00000105853 3058 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
Usp40Q8BWR4 Ralbp1-201ENSMUST00000024905 3765 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Usp40Q8BWR4 Pcdha2-201ENSMUST00000115662 5361 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Usp40Q8BWR4 Ccdc121-201ENSMUST00000058825 1819 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
Usp40Q8BWR4 Gm7899-201ENSMUST00000192935 1897 ntBASIC18.63■□□□□ 0.57
Usp40Q8BWR4 Pard6b-201ENSMUST00000052125 3399 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Usp40Q8BWR4 Slc5a6-202ENSMUST00000114668 3436 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Usp40Q8BWR4 Ccdc185-201ENSMUST00000060041 2055 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
Usp40Q8BWR4 Rpl38-204ENSMUST00000106602 371 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Usp40Q8BWR4 Tomm5-204ENSMUST00000107810 639 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Usp40Q8BWR4 Birc7-201ENSMUST00000108875 1178 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
Usp40Q8BWR4 Spata3-202ENSMUST00000113344 1047 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
Usp40Q8BWR4 Gm6447-201ENSMUST00000118905 835 ntBASIC18.63■□□□□ 0.57
Usp40Q8BWR4 Nfu1-203ENSMUST00000120240 1195 ntAPPRIS P3 TSL 5 BASIC18.63■□□□□ 0.57
Usp40Q8BWR4 Gm13123-201ENSMUST00000122173 492 ntBASIC18.63■□□□□ 0.57
Usp40Q8BWR4 Mpc1-202ENSMUST00000124023 555 ntTSL 2 BASIC18.63■□□□□ 0.57
Usp40Q8BWR4 Ict1os-201ENSMUST00000125653 1052 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Usp40Q8BWR4 Gm15635-202ENSMUST00000131160 917 ntTSL 3 BASIC18.63■□□□□ 0.57
Usp40Q8BWR4 Gm19184-201ENSMUST00000196798 928 ntBASIC18.63■□□□□ 0.57
Usp40Q8BWR4 Gm44756-201ENSMUST00000206172 1069 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Usp40Q8BWR4 Gm45880-201ENSMUST00000213041 853 ntBASIC18.63■□□□□ 0.57
Usp40Q8BWR4 Rrp36-201ENSMUST00000024766 1195 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Usp40Q8BWR4 Cyct-201ENSMUST00000028430 655 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Usp40Q8BWR4 Ambp-201ENSMUST00000030041 1268 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Usp40Q8BWR4 Gm9823-201ENSMUST00000051212 327 ntBASIC18.63■□□□□ 0.57
Usp40Q8BWR4 Kcnh1-201ENSMUST00000078470 7242 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
Usp40Q8BWR4 Gm10268-201ENSMUST00000085340 555 ntBASIC18.63■□□□□ 0.57
Usp40Q8BWR4 Kpna6-201ENSMUST00000003828 2195 ntAPPRIS ALT1 TSL 5 BASIC18.63■□□□□ 0.57
Usp40Q8BWR4 Scube1-201ENSMUST00000016907 3991 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Usp40Q8BWR4 Art3-204ENSMUST00000119587 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Usp40Q8BWR4 Camkk2-201ENSMUST00000111668 4861 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Usp40Q8BWR4 Twsg1-201ENSMUST00000024906 4046 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Usp40Q8BWR4 Arap3-201ENSMUST00000042944 5224 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Usp40Q8BWR4 Spopl-203ENSMUST00000132484 6595 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
Usp40Q8BWR4 Tmem19-203ENSMUST00000217884 2799 ntTSL 5 BASIC18.63■□□□□ 0.57
Usp40Q8BWR4 Bach2os-201ENSMUST00000126225 1661 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Usp40Q8BWR4 Cbln4-201ENSMUST00000087950 2902 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Usp40Q8BWR4 Cenpl-202ENSMUST00000111618 1996 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
Usp40Q8BWR4 Oxtr-201ENSMUST00000053306 4704 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Usp40Q8BWR4 Nr4a2-203ENSMUST00000112629 3422 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
Usp40Q8BWR4 H3f3b-202ENSMUST00000106454 2514 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
Usp40Q8BWR4 Ociad2-201ENSMUST00000087195 2554 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Usp40Q8BWR4 Ppp1r15a-202ENSMUST00000167273 2809 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
Usp40Q8BWR4 Dlgap1-207ENSMUST00000133983 7173 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Usp40Q8BWR4 Gm5940-201ENSMUST00000117582 1068 ntBASIC18.62■□□□□ 0.57
Usp40Q8BWR4 1600014C23Rik-201ENSMUST00000178179 518 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Usp40Q8BWR4 Prr29-204ENSMUST00000188561 592 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
Usp40Q8BWR4 Prr29-206ENSMUST00000190795 822 ntTSL 5 BASIC18.62■□□□□ 0.57
Usp40Q8BWR4 Dnajb6-210ENSMUST00000196528 1018 ntTSL 5 BASIC18.62■□□□□ 0.57
Usp40Q8BWR4 Hax1-207ENSMUST00000198782 855 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
Usp40Q8BWR4 Gm20083-202ENSMUST00000206663 1008 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Usp40Q8BWR4 AC173210.1-201ENSMUST00000222341 1131 ntBASIC18.62■□□□□ 0.57
Usp40Q8BWR4 Gm7399-201ENSMUST00000032395 858 ntBASIC18.62■□□□□ 0.57
Usp40Q8BWR4 Comt-201ENSMUST00000000335 1178 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Usp40Q8BWR4 Tmem86b-201ENSMUST00000055085 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Usp40Q8BWR4 Prss2-201ENSMUST00000070380 815 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Usp40Q8BWR4 Gm10146-201ENSMUST00000072739 309 ntBASIC18.62■□□□□ 0.57
Usp40Q8BWR4 Snora73a-201ENSMUST00000082453 205 ntBASIC18.62■□□□□ 0.57
Usp40Q8BWR4 H2afv-201ENSMUST00000093346 519 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Usp40Q8BWR4 Krt40-201ENSMUST00000074253 1320 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Usp40Q8BWR4 Prg4-207ENSMUST00000162367 1480 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Usp40Q8BWR4 Pole2-201ENSMUST00000021359 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Usp40Q8BWR4 Mfap4-202ENSMUST00000064783 1722 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
Usp40Q8BWR4 Mogat2-201ENSMUST00000064231 1780 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Usp40Q8BWR4 Gigyf1-201ENSMUST00000031727 5440 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Usp40Q8BWR4 Asb3-206ENSMUST00000203878 1813 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
Usp40Q8BWR4 Hoxa7-201ENSMUST00000048715 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Usp40Q8BWR4 Stip1-201ENSMUST00000025918 2173 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Usp40Q8BWR4 Prrxl1-202ENSMUST00000186452 2371 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
Usp40Q8BWR4 Bmp8b-201ENSMUST00000002457 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Usp40Q8BWR4 Ap2m1-201ENSMUST00000007216 2937 ntAPPRIS P3 TSL 5 BASIC18.62■□□□□ 0.57
Usp40Q8BWR4 Ric8b-201ENSMUST00000038523 3069 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Usp40Q8BWR4 Proser2-202ENSMUST00000114942 4398 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Usp40Q8BWR4 Gemin5-202ENSMUST00000102711 4919 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 30.3 ms