Protein–RNA interactions for Protein: Q78JW9

Ubfd1, Ubiquitin domain-containing protein UBFD1, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1Q78JW9 Chodl-201ENSMUST00000023568 2535 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Ubfd1Q78JW9 9330182L06Rik-202ENSMUST00000115348 3403 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Ubfd1Q78JW9 Cadps2-213ENSMUST00000166458 4598 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
Ubfd1Q78JW9 Rtn3-203ENSMUST00000088169 1709 ntTSL 5 BASIC13.3□□□□□ -0.28
Ubfd1Q78JW9 Dgke-201ENSMUST00000000285 5208 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Ubfd1Q78JW9 Olfr1156-203ENSMUST00000216726 3271 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
Ubfd1Q78JW9 Loxl1-201ENSMUST00000061799 3297 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Ubfd1Q78JW9 Atp9b-213ENSMUST00000225980 5150 ntAPPRIS P2 BASIC13.3□□□□□ -0.28
Ubfd1Q78JW9 Eif4g3-215ENSMUST00000203828 5289 ntTSL 5 BASIC13.3□□□□□ -0.28
Ubfd1Q78JW9 Iffo1-202ENSMUST00000119527 2840 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Ubfd1Q78JW9 0610006L08Rik-201ENSMUST00000205326 1589 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Ubfd1Q78JW9 Unc50-202ENSMUST00000114925 1094 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Ubfd1Q78JW9 Gm5303-201ENSMUST00000117943 1252 ntBASIC13.3□□□□□ -0.28
Ubfd1Q78JW9 Ccdc169-203ENSMUST00000118963 740 ntTSL 3 BASIC13.3□□□□□ -0.28
Ubfd1Q78JW9 Gm13612-201ENSMUST00000119276 390 ntBASIC13.3□□□□□ -0.28
Ubfd1Q78JW9 Oprm1-229ENSMUST00000152674 1179 ntTSL 3 BASIC13.3□□□□□ -0.28
Ubfd1Q78JW9 Ndufaf2-201ENSMUST00000163558 678 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Ubfd1Q78JW9 Rps19-ps13-201ENSMUST00000180504 441 ntBASIC13.3□□□□□ -0.28
Ubfd1Q78JW9 Ube2a-205ENSMUST00000201068 1298 ntTSL 5 BASIC13.3□□□□□ -0.28
Ubfd1Q78JW9 4930518P08Rik-201ENSMUST00000221281 1187 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Ubfd1Q78JW9 AC153144.2-201ENSMUST00000221766 451 ntTSL 5 BASIC13.3□□□□□ -0.28
Ubfd1Q78JW9 2310002L09Rik-201ENSMUST00000030101 958 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
Ubfd1Q78JW9 Ccdc169-202ENSMUST00000061099 887 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
Ubfd1Q78JW9 Iqcf4-201ENSMUST00000085111 756 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Ubfd1Q78JW9 Smarce1-201ENSMUST00000103133 2919 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Ubfd1Q78JW9 Vopp1-202ENSMUST00000127485 2908 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Ubfd1Q78JW9 Retsat-205ENSMUST00000176364 1647 ntTSL 5 BASIC13.3□□□□□ -0.28
Ubfd1Q78JW9 Kif3a-201ENSMUST00000057330 2290 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Ubfd1Q78JW9 AC114008.2-201ENSMUST00000227699 1347 ntBASIC13.3□□□□□ -0.28
Ubfd1Q78JW9 Mme-206ENSMUST00000194150 3345 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Ubfd1Q78JW9 Palm-201ENSMUST00000046945 2651 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Ubfd1Q78JW9 Traf2-201ENSMUST00000028311 3044 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
Ubfd1Q78JW9 Edc4-201ENSMUST00000040254 4780 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Ubfd1Q78JW9 Zcchc3-201ENSMUST00000099207 3073 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
Ubfd1Q78JW9 Papd5-201ENSMUST00000066748 4489 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Ubfd1Q78JW9 Mff-201ENSMUST00000073025 1706 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Ubfd1Q78JW9 Grik4-202ENSMUST00000114865 5887 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Ubfd1Q78JW9 Ncdn-202ENSMUST00000106116 2434 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Ubfd1Q78JW9 Tlk2-209ENSMUST00000145048 2776 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Ubfd1Q78JW9 Gpsm1-203ENSMUST00000078616 3127 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Ubfd1Q78JW9 Hectd1-202ENSMUST00000179265 9012 ntTSL 5 BASIC13.3□□□□□ -0.28
Ubfd1Q78JW9 Kmt5c-203ENSMUST00000108583 2177 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Ubfd1Q78JW9 Acin1-201ENSMUST00000022793 4735 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
Ubfd1Q78JW9 Tpm1-202ENSMUST00000034928 1824 ntTSL 5 BASIC13.29□□□□□ -0.28
Ubfd1Q78JW9 Slc39a8-202ENSMUST00000081978 3314 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ubfd1Q78JW9 Acy1-201ENSMUST00000024031 1529 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ubfd1Q78JW9 Fbxo3-201ENSMUST00000028603 4740 ntAPPRIS P4 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ubfd1Q78JW9 Msantd3-201ENSMUST00000061135 1589 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ubfd1Q78JW9 Gm29253-201ENSMUST00000185727 5231 ntTSL 5 BASIC13.29□□□□□ -0.28
Ubfd1Q78JW9 Wbscr25-202ENSMUST00000148729 2075 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Ubfd1Q78JW9 Sh2b3-202ENSMUST00000086310 4195 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ubfd1Q78JW9 Sema4b-204ENSMUST00000205822 3760 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ubfd1Q78JW9 Ranbp3-201ENSMUST00000002445 2511 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ubfd1Q78JW9 Med15-201ENSMUST00000012259 3383 ntAPPRIS P4 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ubfd1Q78JW9 Tssc4-202ENSMUST00000105920 895 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Ubfd1Q78JW9 Eaf2-204ENSMUST00000114829 1030 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ubfd1Q78JW9 St6galnac6-209ENSMUST00000131229 1013 ntTSL 2 BASIC13.29□□□□□ -0.28
Ubfd1Q78JW9 Gm29152-201ENSMUST00000189284 325 ntTSL 5 BASIC13.29□□□□□ -0.28
Ubfd1Q78JW9 AC073947.2-201ENSMUST00000215888 1130 ntBASIC13.29□□□□□ -0.28
Ubfd1Q78JW9 Trappc4-201ENSMUST00000034623 1220 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ubfd1Q78JW9 Atpif1-201ENSMUST00000067496 539 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ubfd1Q78JW9 Ccdc151-201ENSMUST00000044926 2197 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ubfd1Q78JW9 Grin3a-201ENSMUST00000076674 7431 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ubfd1Q78JW9 Rhog-202ENSMUST00000106923 1321 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
Ubfd1Q78JW9 Clec16a-211ENSMUST00000155633 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ubfd1Q78JW9 Sf3a2-203ENSMUST00000148665 2213 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ubfd1Q78JW9 Hspb8-201ENSMUST00000036991 1816 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ubfd1Q78JW9 Arr3-201ENSMUST00000113769 1359 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ubfd1Q78JW9 Leng8-201ENSMUST00000037472 5105 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ubfd1Q78JW9 9330182L06Rik-201ENSMUST00000069538 4688 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ubfd1Q78JW9 Bckdha-201ENSMUST00000071329 1899 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ubfd1Q78JW9 Raver1-202ENSMUST00000217282 4234 ntAPPRIS ALT2 TSL 2 BASIC13.29□□□□□ -0.28
Ubfd1Q78JW9 Otop3-202ENSMUST00000106543 2369 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ubfd1Q78JW9 Lysmd3-202ENSMUST00000224300 4250 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
Ubfd1Q78JW9 Hipk4-202ENSMUST00000108353 2409 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ubfd1Q78JW9 Hps1-204ENSMUST00000160455 2952 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ubfd1Q78JW9 Rab9b-201ENSMUST00000058814 3980 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ubfd1Q78JW9 Plxna1-202ENSMUST00000163139 9034 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ubfd1Q78JW9 Hnrnpr-204ENSMUST00000131671 2543 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Ubfd1Q78JW9 Hes2-201ENSMUST00000030782 2521 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ubfd1Q78JW9 Slc52a3-204ENSMUST00000109861 2590 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ubfd1Q78JW9 Tmem8b-202ENSMUST00000107865 4775 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ubfd1Q78JW9 Adgrb2-206ENSMUST00000106018 4470 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
Ubfd1Q78JW9 Rxrg-204ENSMUST00000111386 1705 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
Ubfd1Q78JW9 Zfp568-203ENSMUST00000148442 4005 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ubfd1Q78JW9 Hcn3-201ENSMUST00000029686 4002 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ubfd1Q78JW9 Dym-201ENSMUST00000039608 2471 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ubfd1Q78JW9 Brpf1-210ENSMUST00000204626 4381 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ubfd1Q78JW9 Gm13886-201ENSMUST00000117876 1183 ntBASIC13.28□□□□□ -0.28
Ubfd1Q78JW9 Gm13834-201ENSMUST00000123757 137 ntTSL 3 BASIC13.28□□□□□ -0.28
Ubfd1Q78JW9 4930407G08Rik-201ENSMUST00000145831 698 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Ubfd1Q78JW9 Rpl18-208ENSMUST00000211061 552 ntTSL 5 BASIC13.28□□□□□ -0.28
Ubfd1Q78JW9 Fam173b-201ENSMUST00000042702 1164 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ubfd1Q78JW9 Lyzl4-201ENSMUST00000077706 996 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ubfd1Q78JW9 Vash1-201ENSMUST00000021681 2599 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ubfd1Q78JW9 St6gal2-202ENSMUST00000086878 2606 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Ubfd1Q78JW9 Tet3-203ENSMUST00000186548 5944 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ubfd1Q78JW9 Iqcm-203ENSMUST00000212704 2035 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ubfd1Q78JW9 Mbp-203ENSMUST00000075372 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ubfd1Q78JW9 Kdm5c-202ENSMUST00000112584 5900 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 64 ms