Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Cldn34c1-201ENSMUST00000113343 3301 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col28a1Q2UY11 Ankrd42-202ENSMUST00000118157 2782 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col28a1Q2UY11 Gm9920-204ENSMUST00000148544 2752 ntTSL 2 BASIC13.31□□□□□ -0.28
Col28a1Q2UY11 Casc4-202ENSMUST00000089912 3602 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Col28a1Q2UY11 Minos1-203ENSMUST00000143971 2549 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col28a1Q2UY11 Prkca-202ENSMUST00000100302 2265 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Col28a1Q2UY11 Zyg11a-203ENSMUST00000223127 2283 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
Col28a1Q2UY11 Adsl-206ENSMUST00000168756 1439 ntTSL 5 BASIC13.3□□□□□ -0.28
Col28a1Q2UY11 Tnpo2-202ENSMUST00000166592 4884 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
Col28a1Q2UY11 Gm45638-201ENSMUST00000211507 2878 ntBASIC13.3□□□□□ -0.28
Col28a1Q2UY11 Zyx-202ENSMUST00000164375 3188 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col28a1Q2UY11 Rbm47-206ENSMUST00000200775 3180 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col28a1Q2UY11 Asb10-201ENSMUST00000048302 2327 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col28a1Q2UY11 Trp53-203ENSMUST00000108658 1771 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col28a1Q2UY11 Gm26788-201ENSMUST00000181692 1750 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Col28a1Q2UY11 Trp53-201ENSMUST00000005371 1772 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col28a1Q2UY11 Tnfrsf21-201ENSMUST00000024708 3626 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col28a1Q2UY11 Ttc5-201ENSMUST00000006451 1842 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col28a1Q2UY11 Hk1-202ENSMUST00000099691 4278 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col28a1Q2UY11 Tmem51os1-204ENSMUST00000153023 3440 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Col28a1Q2UY11 Ptgr2-208ENSMUST00000147363 1869 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Col28a1Q2UY11 Enc1-201ENSMUST00000041623 4737 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col28a1Q2UY11 Msantd3-201ENSMUST00000061135 1589 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col28a1Q2UY11 Rph3al-203ENSMUST00000108420 695 ntTSL 3 BASIC13.3□□□□□ -0.28
Col28a1Q2UY11 Diablo-202ENSMUST00000111586 719 ntTSL 5 BASIC13.3□□□□□ -0.28
Col28a1Q2UY11 Gm24158-201ENSMUST00000175263 71 ntBASIC13.3□□□□□ -0.28
Col28a1Q2UY11 Prss47-201ENSMUST00000182457 828 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
Col28a1Q2UY11 Rnf2-203ENSMUST00000186415 1106 ntTSL 5 BASIC13.3□□□□□ -0.28
Col28a1Q2UY11 Slc12a5-208ENSMUST00000202479 1202 ntTSL 5 BASIC13.3□□□□□ -0.28
Col28a1Q2UY11 CT025555.1-201ENSMUST00000225901 1217 ntBASIC13.3□□□□□ -0.28
Col28a1Q2UY11 Diablo-201ENSMUST00000031385 681 ntTSL 2 BASIC13.3□□□□□ -0.28
Col28a1Q2UY11 Eif2b2-201ENSMUST00000004910 1605 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col28a1Q2UY11 Camk2b-203ENSMUST00000066431 1603 ntAPPRIS ALT1 TSL 5 BASIC13.3□□□□□ -0.28
Col28a1Q2UY11 Ralgps2-214ENSMUST00000191605 2958 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col28a1Q2UY11 Dusp13-202ENSMUST00000119866 1342 ntTSL 5 BASIC13.3□□□□□ -0.28
Col28a1Q2UY11 Apbb2-203ENSMUST00000159512 6632 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Col28a1Q2UY11 Myc-205ENSMUST00000161976 2338 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Col28a1Q2UY11 Myc-201ENSMUST00000022971 2338 ntAPPRIS ALT1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col28a1Q2UY11 Rpusd2-201ENSMUST00000028796 2706 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col28a1Q2UY11 Ddx24-202ENSMUST00000110001 3063 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col28a1Q2UY11 Ptpru-203ENSMUST00000105987 5484 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Col28a1Q2UY11 Alx1-201ENSMUST00000040859 2493 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col28a1Q2UY11 Dlgap1-208ENSMUST00000135938 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col28a1Q2UY11 Myh7-201ENSMUST00000102803 6135 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col28a1Q2UY11 Rgs12-202ENSMUST00000087684 4713 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
Col28a1Q2UY11 Gpc2-205ENSMUST00000161827 2586 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Col28a1Q2UY11 Gm26777-201ENSMUST00000181852 2573 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Col28a1Q2UY11 Pde12-201ENSMUST00000052932 7725 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Col28a1Q2UY11 Zpbp2-201ENSMUST00000017339 1455 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
Col28a1Q2UY11 Hdgfl2-201ENSMUST00000002911 2264 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Col28a1Q2UY11 Gm42893-201ENSMUST00000198035 1502 ntTSL 3 BASIC13.29□□□□□ -0.28
Col28a1Q2UY11 Krt20-201ENSMUST00000017743 1927 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Col28a1Q2UY11 Fgfr1-201ENSMUST00000084027 5025 ntAPPRIS P3 TSL 5 BASIC13.29□□□□□ -0.28
Col28a1Q2UY11 Pdxk-ps-201ENSMUST00000159650 2342 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Col28a1Q2UY11 Gtf2e2-201ENSMUST00000167264 1566 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Col28a1Q2UY11 Gm38355-201ENSMUST00000192514 1570 ntBASIC13.29□□□□□ -0.28
Col28a1Q2UY11 Gm36995-201ENSMUST00000126170 5727 ntTSL 2 BASIC13.29□□□□□ -0.28
Col28a1Q2UY11 B230206H07Rik-202ENSMUST00000134845 3269 ntTSL 5 BASIC13.29□□□□□ -0.28
Col28a1Q2UY11 Naa40-201ENSMUST00000025675 3275 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Col28a1Q2UY11 Caprin1-201ENSMUST00000028607 6169 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Col28a1Q2UY11 Lrriq4-201ENSMUST00000108265 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Col28a1Q2UY11 Gpr19-204ENSMUST00000116515 2075 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Col28a1Q2UY11 Grik2-210ENSMUST00000220263 2085 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Col28a1Q2UY11 Lrrc8a-202ENSMUST00000113654 4194 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
Col28a1Q2UY11 Trbc1-201ENSMUST00000103291 512 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
Col28a1Q2UY11 Trbc2-201ENSMUST00000103299 692 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
Col28a1Q2UY11 Ppcs-202ENSMUST00000106316 954 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Col28a1Q2UY11 Zfp637-202ENSMUST00000112859 421 ntTSL 2 BASIC13.29□□□□□ -0.28
Col28a1Q2UY11 Rps13-ps4-201ENSMUST00000117927 456 ntBASIC13.29□□□□□ -0.28
Col28a1Q2UY11 Rps13-ps5-201ENSMUST00000117939 456 ntBASIC13.29□□□□□ -0.28
Col28a1Q2UY11 Gm12428-201ENSMUST00000119844 727 ntBASIC13.29□□□□□ -0.28
Col28a1Q2UY11 Gm15483-201ENSMUST00000120338 456 ntBASIC13.29□□□□□ -0.28
Col28a1Q2UY11 Gm11724-201ENSMUST00000125577 472 ntTSL 2 BASIC13.29□□□□□ -0.28
Col28a1Q2UY11 Abhd11os-201ENSMUST00000136022 604 ntTSL 2 BASIC13.29□□□□□ -0.28
Col28a1Q2UY11 Snu13-203ENSMUST00000166578 1061 ntTSL 2 BASIC13.29□□□□□ -0.28
Col28a1Q2UY11 Gm17399-201ENSMUST00000181824 1181 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Col28a1Q2UY11 Gm28277-201ENSMUST00000187450 885 ntTSL 3 BASIC13.29□□□□□ -0.28
Col28a1Q2UY11 0610005C13Rik-201ENSMUST00000209416 856 ntTSL 5 BASIC13.29□□□□□ -0.28
Col28a1Q2UY11 AI463170-203ENSMUST00000219353 430 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Col28a1Q2UY11 Rasgef1c-202ENSMUST00000093141 2120 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Col28a1Q2UY11 Dusp13-201ENSMUST00000075040 1745 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Col28a1Q2UY11 Matn3-201ENSMUST00000020899 3014 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Col28a1Q2UY11 P4ha2-201ENSMUST00000019050 2230 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
Col28a1Q2UY11 Lmod3-201ENSMUST00000095655 2215 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Col28a1Q2UY11 Gm26525-201ENSMUST00000180666 3616 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Col28a1Q2UY11 Gm26867-201ENSMUST00000180963 3615 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Col28a1Q2UY11 Sox11-201ENSMUST00000079063 8311 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
Col28a1Q2UY11 Gm16976-201ENSMUST00000099718 1894 ntTSL 5 BASIC13.29□□□□□ -0.28
Col28a1Q2UY11 Wiz-201ENSMUST00000064694 2871 ntAPPRIS P4 TSL 1 (best) BASIC13.29□□□□□ -0.28
Col28a1Q2UY11 Agpat1-202ENSMUST00000114140 1941 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Col28a1Q2UY11 Slc25a46-201ENSMUST00000060396 4371 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Col28a1Q2UY11 Rp2-201ENSMUST00000033372 4417 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Col28a1Q2UY11 Kdm5c-203ENSMUST00000112588 6449 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Col28a1Q2UY11 Gpr132-201ENSMUST00000021729 2478 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Col28a1Q2UY11 Arl4a-205ENSMUST00000146905 3710 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Col28a1Q2UY11 Kctd20-202ENSMUST00000117672 2219 ntTSL 5 BASIC13.28□□□□□ -0.28
Col28a1Q2UY11 Klhdc4-210ENSMUST00000174717 1662 ntTSL 5 BASIC13.28□□□□□ -0.28
Col28a1Q2UY11 Rinl-201ENSMUST00000059857 2871 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Col28a1Q2UY11 Mul1-201ENSMUST00000044058 3733 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Col28a1Q2UY11 Lcn5-202ENSMUST00000100312 660 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 86.8 ms